View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5570_low_5 (Length: 406)

Name: NF5570_low_5
Description: NF5570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5570_low_5
NF5570_low_5
[»] chr7 (3 HSPs)
chr7 (218-359)||(6448430-6448570)
chr7 (18-219)||(6448186-6448385)
chr7 (378-406)||(31457997-31458025)
[»] scaffold0163 (1 HSPs)
scaffold0163 (371-406)||(1455-1490)
[»] chr6 (4 HSPs)
chr6 (375-406)||(16272977-16273008)
chr6 (370-403)||(25197144-25197177)
chr6 (370-406)||(16122523-16122559)
chr6 (370-406)||(34915552-34915588)
[»] chr4 (5 HSPs)
chr4 (371-406)||(56432511-56432546)
chr4 (373-406)||(45742815-45742848)
chr4 (378-406)||(43388002-43388030)
chr4 (378-406)||(47228737-47228765)
chr4 (374-406)||(49793087-49793119)
[»] scaffold0008 (1 HSPs)
scaffold0008 (372-406)||(259131-259165)
[»] chr1 (2 HSPs)
chr1 (376-406)||(2279951-2279981)
chr1 (378-406)||(45039681-45039709)
[»] chr5 (1 HSPs)
chr5 (368-405)||(13661129-13661166)
[»] chr3 (5 HSPs)
chr3 (377-406)||(43978159-43978188)
chr3 (370-406)||(12050401-12050437)
chr3 (378-406)||(26058546-26058574)
chr3 (370-406)||(42801513-42801549)
chr3 (378-406)||(47066934-47066962)
[»] chr2 (1 HSPs)
chr2 (369-402)||(3201510-3201543)
[»] scaffold0339 (1 HSPs)
scaffold0339 (378-406)||(7149-7177)
[»] chr8 (1 HSPs)
chr8 (370-406)||(2944281-2944317)


Alignment Details
Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 218 - 359
Target Start/End: Original strand, 6448430 - 6448570
Alignment:
Q  218 ttcgtgaaattcttaggtttcaatgataaataataaagtatgattttcatcaacaatagagaatgggggtattctgagataataagtctatcaatgtagg 317  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6448430 ttcgtgaaactcttaggttacaatgataaataataaagtatgattttcatcaacaatagagaatgggg-tattctgagataataagtctatcaatgtagg 6448528  T
Q  318 aagataccgtttgtggagaaatttaagaaacataataaacta 359  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  6448529 aagataccgtttgcggagaaatttaagaaacataataaacta 6448570  T

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Target: chr7; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 6448186 - 6448385
Alignment:
Q  18 tgaacttcactaatcctaccgttaatcaaaagttcttattcagtagatgaactctacgannnnnnnnnnnnnnnnnnaaatggttagatgcatcattaga 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  |||||||| ||||||||||||||    
T  6448186 tgaacttcactaatcctaccgttaatcaaaagttcttattcagtagatgaactctacgatttttttataatttttttaaatggtttgatgcatcattaga 6448285  T
Q  118 taattttaaatgaacatgtaataataaggttttaaaaacataag-taataacaatggctaaattacatatctgtgaatttgggattttatataaaatttg 216  Q
    ||||||||||||||||||||||||   ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6448286 taattttaaatgaacatgtaataa---ggttttaaaaacataagataataacaatggctaaattacatatctatgaatttgggattttatataaaatttg 6448382  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 406
Target Start/End: Original strand, 31457997 - 31458025
Alignment:
Q  378 tacttcctccgtccctaattataagaccc 406  Q
    |||||||||||||||||||||||||||||    
T  31457997 tacttcctccgtccctaattataagaccc 31458025  T

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Target: scaffold0163 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 371 - 406
Target Start/End: Complemental strand, 1490 - 1455
Alignment:
Q  371 aaacaaatacttcctccgtccctaattataagaccc 406  Q
    ||||||||||| ||||||||||||||||||||||||    
T  1490 aaacaaatactacctccgtccctaattataagaccc 1455  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 375 - 406
Target Start/End: Complemental strand, 16273008 - 16272977
Alignment:
Q  375 aaatacttcctccgtccctaattataagaccc 406  Q
    ||||||||||||||||||||||||||||||||    
T  16273008 aaatacttcctccgtccctaattataagaccc 16272977  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 370 - 403
Target Start/End: Original strand, 25197144 - 25197177
Alignment:
Q  370 aaaacaaatacttcctccgtccctaattataaga 403  Q
    |||||||||||| |||||||||||||||||||||    
T  25197144 aaaacaaatactccctccgtccctaattataaga 25197177  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Complemental strand, 16122559 - 16122523
Alignment:
Q  370 aaaacaaatacttcctccgtccctaattataagaccc 406  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  16122559 aaaaaaaatactacctccgtccctaattataagaccc 16122523  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Complemental strand, 34915588 - 34915552
Alignment:
Q  370 aaaacaaatacttcctccgtccctaattataagaccc 406  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  34915588 aaaaaaaatactacctccgtccctaattataagaccc 34915552  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 371 - 406
Target Start/End: Original strand, 56432511 - 56432546
Alignment:
Q  371 aaacaaatacttcctccgtccctaattataagaccc 406  Q
    ||||||||||| ||||||||||||||||||||||||    
T  56432511 aaacaaatactacctccgtccctaattataagaccc 56432546  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 373 - 406
Target Start/End: Complemental strand, 45742848 - 45742815
Alignment:
Q  373 acaaatacttcctccgtccctaattataagaccc 406  Q
    ||||||||| ||||||||||||||||||||||||    
T  45742848 acaaatactccctccgtccctaattataagaccc 45742815  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 406
Target Start/End: Complemental strand, 43388030 - 43388002
Alignment:
Q  378 tacttcctccgtccctaattataagaccc 406  Q
    |||||||||||||||||||||||||||||    
T  43388030 tacttcctccgtccctaattataagaccc 43388002  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 406
Target Start/End: Complemental strand, 47228765 - 47228737
Alignment:
Q  378 tacttcctccgtccctaattataagaccc 406  Q
    |||||||||||||||||||||||||||||    
T  47228765 tacttcctccgtccctaattataagaccc 47228737  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 406
Target Start/End: Original strand, 49793087 - 49793119
Alignment:
Q  374 caaatacttcctccgtccctaattataagaccc 406  Q
    |||||||| ||||||||||||||||||||||||    
T  49793087 caaatactacctccgtccctaattataagaccc 49793119  T

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Target: scaffold0008 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 406
Target Start/End: Complemental strand, 259165 - 259131
Alignment:
Q  372 aacaaatacttcctccgtccctaattataagaccc 406  Q
    |||||||||| ||||||||||||||||||||||||    
T  259165 aacaaatactccctccgtccctaattataagaccc 259131  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 406
Target Start/End: Original strand, 2279951 - 2279981
Alignment:
Q  376 aatacttcctccgtccctaattataagaccc 406  Q
    |||||||||||||||||||||||||||||||    
T  2279951 aatacttcctccgtccctaattataagaccc 2279981  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 406
Target Start/End: Complemental strand, 45039709 - 45039681
Alignment:
Q  378 tacttcctccgtccctaattataagaccc 406  Q
    |||||||||||||||||||||||||||||    
T  45039709 tacttcctccgtccctaattataagaccc 45039681  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 368 - 405
Target Start/End: Complemental strand, 13661166 - 13661129
Alignment:
Q  368 tcaaaacaaatacttcctccgtccctaattataagacc 405  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  13661166 tcaaaacatatactccctccgtccctaattataagacc 13661129  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 406
Target Start/End: Original strand, 43978159 - 43978188
Alignment:
Q  377 atacttcctccgtccctaattataagaccc 406  Q
    ||||||||||||||||||||||||||||||    
T  43978159 atacttcctccgtccctaattataagaccc 43978188  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Complemental strand, 12050437 - 12050401
Alignment:
Q  370 aaaacaaatacttcctccgtccctaattataagaccc 406  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  12050437 aaaaaaaatactccctccgtccctaattataagaccc 12050401  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 406
Target Start/End: Original strand, 26058546 - 26058574
Alignment:
Q  378 tacttcctccgtccctaattataagaccc 406  Q
    |||||||||||||||||||||||||||||    
T  26058546 tacttcctccgtccctaattataagaccc 26058574  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Original strand, 42801513 - 42801549
Alignment:
Q  370 aaaacaaatacttcctccgtccctaattataagaccc 406  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  42801513 aaaataaatactacctccgtccctaattataagaccc 42801549  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 406
Target Start/End: Original strand, 47066934 - 47066962
Alignment:
Q  378 tacttcctccgtccctaattataagaccc 406  Q
    |||||||||||||||||||||||||||||    
T  47066934 tacttcctccgtccctaattataagaccc 47066962  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 3201543 - 3201510
Alignment:
Q  369 caaaacaaatacttcctccgtccctaattataag 402  Q
    |||||||||||||||||||||||| |||||||||    
T  3201543 caaaacaaatacttcctccgtcccaaattataag 3201510  T

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Target: scaffold0339 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0339
Description:

Target: scaffold0339; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 406
Target Start/End: Complemental strand, 7177 - 7149
Alignment:
Q  378 tacttcctccgtccctaattataagaccc 406  Q
    |||||||||||||||||||||||||||||    
T  7177 tacttcctccgtccctaattataagaccc 7149  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Complemental strand, 2944317 - 2944281
Alignment:
Q  370 aaaacaaatacttcctccgtccctaattataagaccc 406  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  2944317 aaaacaattactccctccgtccctaattataagaccc 2944281  T

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