View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5570_low_7 (Length: 373)
Name: NF5570_low_7
Description: NF5570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5570_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 360
Target Start/End: Complemental strand, 5067448 - 5067094
Alignment:
| Q |
11 |
caaaggtcaaggtaaaaatcataaacaacttcacatgnnnnnnnnnnnnnnnnnccatcatcatcatttgattggttactttggtgcatgtgttctataa |
110 |
Q |
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| T |
5067448 |
caaaggtcaaggtaaaaatcataaacaacttcacatgttttttgttttgtttttccatcatcatcatttgattggttactttggtgcatgtgttctataa |
5067349 |
T |
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| Q |
111 |
agtctaatgttcctatgttcatgtttcttgttagtggagtggtttttatgtacttggttttttagactattccattggtttcattttcttcatattttct |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5067348 |
-gtctaatgttcctatgttcatgtttcttgttagtggagtggtttttatgtacttggttttttagactattccattggtttcattttcttcatattttct |
5067250 |
T |
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| Q |
211 |
tgat------nnnnnnnnnnnctactttgatcatcttcccttgcatggcactgtgatttatcacattaattaatcacccttttgaatgtattacaaaaat |
304 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5067249 |
tgataaaaaaaaaaaaaaaaactactttgatcatcttcccttgcatggcactgtgatttatcacattaattaatcacccttttgaatgtattacaaaaat |
5067150 |
T |
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| Q |
305 |
catggggtgtttaaccaaatcacgatgatactatgattttattgaagctctaaagc |
360 |
Q |
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|||||||||||||||||||||||||||| ||| |||||||||||||||||| |||| |
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| T |
5067149 |
catggggtgtttaaccaaatcacgatgacactgtgattttattgaagctctgaagc |
5067094 |
T |
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