View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5571-Insertion-1 (Length: 554)
Name: NF5571-Insertion-1
Description: NF5571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5571-Insertion-1 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 8 - 554
Target Start/End: Complemental strand, 51543633 - 51543088
Alignment:
| Q |
8 |
gacggttactttgagatctgacaaccgagattgaaaactgcgtgacacggttatttttatcatggccaaagagaaggagnnnnnnncagttaaattttgt |
107 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
51543633 |
gacggttattttgagatctgacaaccgagattgaaaactgagtgacacggttatttttatcatggccaaagagaagga-aaaaaaacagttaaattttgt |
51543535 |
T |
|
| Q |
108 |
aacttaatcttttagctgcagcagaattatttttcccttcgtttatttcattcctaagcatagtctaaaatctatatcatcaaactcagacacagacagt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
51543534 |
aacttaatcttttagctgcagcagaattatttttcccttcgtttatttcattcctaagcatagtctaaaatctatatcatcaaactcagacacagacaat |
51543435 |
T |
|
| Q |
208 |
aaccatactatggtttacaaagttgtatgattatactattatatgatccataataatacatacaaagcagcacgctcactatgccttatacgtaaagggt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||| |
|
|
| T |
51543434 |
aaccatactatggtttacaaagttgtatgattatactattatatgatccataataatacatacaaagcagcacactcactatgccttatacataaaaggt |
51543335 |
T |
|
| Q |
308 |
ttatatttgccaatagcttgactcaacccatgaatagctccaattgctgcagccaatgacacaagtaaacagaaaaggctcaatgtttgaagcccaaacc |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51543334 |
ttatatttgccaatagcttgactcaacccatgaatagctccaattgctgcagccaatgacacaagtaaacagaaaaggctcaatgtttgaagcccaaacc |
51543235 |
T |
|
| Q |
408 |
aacgaaatgttccttttctgatcttttgtctcacaatgtacatctccaccggaaaatacaccactgaaggccaaaacccaagggcaccaagaagagcaat |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
51543234 |
aacgaaatgttccttttctgatcttttgtctcacaatgtacatctccaccggaaaatacaccactgaaggccaaaacccaagggcaccaagaagggcaat |
51543135 |
T |
|
| Q |
508 |
catgtcattgaaaaagggtattgccatggctagaacagttaccacca |
554 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
51543134 |
catgtcattgaaaaagggcattgccatggctagaacagttaccacca |
51543088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University