View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5571-Insertion-2 (Length: 301)

Name: NF5571-Insertion-2
Description: NF5571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5571-Insertion-2
NF5571-Insertion-2
[»] chr3 (15 HSPs)
chr3 (6-301)||(9019262-9019557)
chr3 (91-272)||(8746957-8747138)
chr3 (101-273)||(9034622-9034794)
chr3 (127-267)||(9108802-9108942)
chr3 (99-273)||(9023452-9023626)
chr3 (92-273)||(9029115-9029297)
chr3 (97-273)||(9101230-9101406)
chr3 (135-273)||(8755583-8755721)
chr3 (130-274)||(8962562-8962706)
chr3 (91-273)||(9026156-9026338)
chr3 (133-273)||(8965278-8965418)
chr3 (135-273)||(8957123-8957261)
chr3 (91-270)||(9015428-9015606)
chr3 (133-270)||(8988350-8988487)
chr3 (143-268)||(9112114-9112239)


Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 6 - 301
Target Start/End: Complemental strand, 9019557 - 9019262
Alignment:
Q  6 atagtacacaagaaaatgtgtaggtagatcaactcataataatcaacaataacgactatctttgagttgtgttcattttctttgtttccacgaaatccac 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9019557 atagtacacaagaaaatgtgtaggtagatcaactcataataatcaacaataacgactatctttgagttgtgttcattttctttgtttccacgaaatccac 9019458  T
Q  106 cagaaaattagtgggttcatgatgttttcagttcttcaagatggcaagcattgacaacacaattgaagctccgatcatagcaactgaactcgtaacagat 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9019457 cagaaaattagtgggttcatgatgttttcagttcttcaagatggcaagcattgacaacacaattgaagctccgatcatagcaactgaactcgtaacagat 9019358  T
Q  206 ccacaagccccaacatcaggacctggtgccggagcggatgagggactaaggtcttgagccgaggccacaacagccacaaagacaacaaaaaagaaa 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9019357 ccacaagccccaacatcaggacctggtgccggagcggatgagggactaaggtcttgagccgaggccacaacagccacaaagacaacaaaaaagaaa 9019262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 91 - 272
Target Start/End: Complemental strand, 8747138 - 8746957
Alignment:
Q  91 ttccacgaaatccaccagaaaattagtgggttcatgatgttttcagttcttcaagatggcaagcattgacaacacaattgaagctccgatcatagcaact 190  Q
    ||||| ||||||||| ||||||| |||||  |||| || |||| ||| ||| |||||||| ||||||||||||||||||||| |||| |||||||| |||    
T  8747138 ttccatgaaatccacaagaaaatgagtggaatcatcatttttttagtgcttgaagatggcgagcattgacaacacaattgaaactccaatcatagccact 8747039  T
Q  191 gaactcgtaacagatccacaagccccaacatcaggacctggtgccggagcggatgagggactaaggtcttgagccgaggcca 272  Q
    ||| | ||||||||||||  ||| |||||||||||||||||||| |||||  | |||||||| |||||||| || |||||||    
T  8747038 gaatttgtaacagatccaacagctccaacatcaggacctggtgctggagccaacgagggactgaggtcttgggcagaggcca 8746957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 101 - 273
Target Start/End: Complemental strand, 9034794 - 9034622
Alignment:
Q  101 tccaccagaaaattagtgggttcatgatgttttcagttcttcaagatggcaagcattgacaacacaattgaagctccgatcatagcaactgaactcgtaa 200  Q
    ||||| ||||||| ||||   |||| ||||||| ||| ||| |||||||| ||||||||||||||||||||| ||||||||||||| || ||||| | ||    
T  9034794 tccacaagaaaataagtgaaatcatcatgtttttagtgcttgaagatggcgagcattgacaacacaattgaaactccgatcatagccaccgaacttgcaa 9034695  T
Q  201 cagatccacaagccccaacatcaggacctggtgccggagcggatgagggactaaggtcttgagccgaggccac 273  Q
    ||||||||  ||| ||| ||||||||||||||||||||||  | || |||||||||||||| || ||||||||    
T  9034694 cagatccagcagctccagcatcaggacctggtgccggagccaacgaaggactaaggtcttgggcagaggccac 9034622  T

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Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 127 - 267
Target Start/End: Complemental strand, 9108942 - 9108802
Alignment:
Q  127 atgttttcagttcttcaagatggcaagcattgacaacacaattgaagctccgatcatagcaactgaactcgtaacagatccacaagccccaacatcagga 226  Q
    ||||||| ||||||||||||  |||||||||||||| |||||||||||||||||||| || |||||||| |||||||||||   ||| || |||||||||    
T  9108942 atgtttttagttcttcaagagtgcaagcattgacaagacaattgaagctccgatcatggccactgaacttgtaacagatccggcagctccgacatcagga 9108843  T
Q  227 cctggtgccggagcggatgagggactaaggtcttgagccga 267  Q
    |||| ||| |||||  |||||||||| ||||||||||||||    
T  9108842 cctgatgctggagccaatgagggactgaggtcttgagccga 9108802  T

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Target: chr3; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 99 - 273
Target Start/End: Complemental strand, 9023626 - 9023452
Alignment:
Q  99 aatccaccagaaaattagtgggttcatgatgttttcagttcttcaagatggcaagcattgacaacacaattgaagctccgatcatagcaactgaactcgt 198  Q
    ||||||| ||||||| |||||  |||| ||||||| ||| ||| |||||||| ||||||||||| ||||  |||  ||||| |||||| |||||||| ||    
T  9023626 aatccacaagaaaatgagtggaatcatcatgtttttagtgcttgaagatggcgagcattgacaatacaaccgaaattccgaccatagccactgaacttgt 9023527  T
Q  199 aacagatccacaagccccaacatcaggacctggtgccggagcggatgagggactaaggtcttgagccgaggccac 273  Q
    ||||||||||  ||| ||| ||||||||||||||||||||||  | ||||||||||||||||| || ||||||||    
T  9023526 aacagatccagcagctccagcatcaggacctggtgccggagccaacgagggactaaggtcttgggcagaggccac 9023452  T

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Target: chr3; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 92 - 273
Target Start/End: Complemental strand, 9029297 - 9029115
Alignment:
Q  92 tccacgaaatccaccagaaaattagtgggttc-atgatgttttcagttcttcaagatggcaagcattgacaacacaattgaagctccgatcatagcaact 190  Q
    |||| ||||||||| ||||||| |||||  || || ||||||| ||| ||| |||||||| ||||||||||||||||||||| |||||||||||||  ||    
T  9029297 tccatgaaatccacaagaaaataagtggaatccatcatgtttttagtgcttgaagatggcgagcattgacaacacaattgaaactccgatcatagccgct 9029198  T
Q  191 gaactcgtaacagatccacaagccccaacatcaggacctggtgccggagcggatgagggactaaggtcttgagccgaggccac 273  Q
    ||||| |||| |||||||  ||| ||| |||||||||||||||| |||||  | || |||||||||||||| || ||||||||    
T  9029197 gaacttgtaatagatccagcagctccagcatcaggacctggtgctggagccaacgaaggactaaggtcttgggcagaggccac 9029115  T

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Target: chr3; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 97 - 273
Target Start/End: Complemental strand, 9101406 - 9101230
Alignment:
Q  97 gaaatccaccagaaaattagtgggttcatgatgttttcagttcttcaagatggcaagcattgacaacacaattgaagctccgatcatagcaactgaactc 196  Q
    ||||||||| ||||||| ||||   |||| ||||||| ||| ||| |||||||| ||||||||||| ||||||||| ||||||||||||| ||||||||     
T  9101406 gaaatccacaagaaaataagtgcaatcatcatgtttttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaactt 9101307  T
Q  197 gtaacagatccacaagccccaacatcaggacctggtgccggagcggatgagggactaaggtcttgagccgaggccac 273  Q
    |||||||| |||  ||| ||| ||||||| |||||||| |||||  | |||||||| |||| ||| || ||||||||    
T  9101306 gtaacagaaccagcagctccagcatcagggcctggtgctggagccaacgagggactgaggttttgggcagaggccac 9101230  T

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Target: chr3; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 135 - 273
Target Start/End: Complemental strand, 8755721 - 8755583
Alignment:
Q  135 agttcttcaagatggcaagcattgacaacacaattgaagctccgatcatagcaactgaactcgtaacagatccacaagccccaacatcaggacctggtgc 234  Q
    ||||||| |||||||| ||||| ||||| | ||| |||||||| ||||||||||||||| | ||||||||||||  ||| ||  |||||||| |||||||    
T  8755721 agttcttgaagatggcgagcatagacaaaataatcgaagctccaatcatagcaactgaatttgtaacagatccagcagcaccggcatcaggatctggtgc 8755622  T
Q  235 cggagcggatgagggactaaggtcttgagccgaggccac 273  Q
    ||||||  | |||||||| |||||||||||||| |||||    
T  8755621 cggagccaacgagggactgaggtcttgagccgaagccac 8755583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 130 - 274
Target Start/End: Complemental strand, 8962706 - 8962562
Alignment:
Q  130 ttttcagttcttcaagatggcaagcattgacaacacaattgaagctccgatcatagcaactgaactcgtaacagatccacaagccccaacatcaggacct 229  Q
    |||||| ||||| ||||| || |||||||| | |||||||||||||||||||||||| || ||||  | |||||||||   | | ||| |||||||||||    
T  8962706 ttttcaattcttgaagatagcgagcattgaaagcacaattgaagctccgatcatagccacagaacctgcaacagatccggcaactccagcatcaggacct 8962607  T
Q  230 ggtgccggagcggatgagggactaaggtcttgagccgaggccaca 274  Q
    ||||| |||||  | ||||||||||||||||| ||||||||||||    
T  8962606 ggtgctggagctaacgagggactaaggtcttgggccgaggccaca 8962562  T

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Target: chr3; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 91 - 273
Target Start/End: Complemental strand, 9026338 - 9026156
Alignment:
Q  91 ttccacgaaatccaccagaaaattagtgggttcatgatgttttcagttcttcaagatggcaagcattgacaacacaattgaagctccgatcatagcaact 190  Q
    ||||| ||||||||| ||||||| |||||  |||| ||||||| |||  || |||||||| | ||||||||| |||| |||| |||||||||| || |||    
T  9026338 ttccatgaaatccacaagaaaataagtggaatcattatgtttttagtgtttgaagatggcgatcattgacaatacaactgaaactccgatcattgccact 9026239  T
Q  191 gaactcgtaacagatccacaagccccaacatcaggacctggtgccggagcggatgagggactaaggtcttgagccgaggccac 273  Q
    ||||| ||||||||||||  | | ||| |||||| ||||||||| |||||  | || |||||||| ||||| || ||||||||    
T  9026238 gaacttgtaacagatccagcaactccagcatcagaacctggtgctggagccaacgaaggactaagatcttgggcagaggccac 9026156  T

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Target: chr3; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 273
Target Start/End: Complemental strand, 8965418 - 8965278
Alignment:
Q  133 tcagttcttcaagatggcaagcattgacaacacaattgaagctccgatcatagcaactgaactcgtaacagatccacaagccccaacatcaggacctggt 232  Q
    ||||||||| ||||| || |||||||||| ||||||||||||||||||||| || |  ||||| |||||||||||   ||| ||| | ||||||| ||||    
T  8965418 tcagttcttgaagattgcgagcattgacagcacaattgaagctccgatcattgccatagaacttgtaacagatccggcagctccagcgtcaggacttggt 8965319  T
Q  233 gccggagcggatgagggactaaggtcttgagccgaggccac 273  Q
    || |||||  | || |||||||||||||| |||||||||||    
T  8965318 gctggagccaacgacggactaaggtcttgggccgaggccac 8965278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 135 - 273
Target Start/End: Complemental strand, 8957261 - 8957123
Alignment:
Q  135 agttcttcaagatggcaagcattgacaacacaattgaagctccgatcatagcaactgaactcgtaacagatccacaagccccaacatcaggacctggtgc 234  Q
    ||||||| || ||||| | |||||||| |||||||||||||||||||||||| || ||||| |||||| ||||   ||| ||| | |||||||| |||||    
T  8957261 agttcttgaaaatggcgaccattgacagcacaattgaagctccgatcatagccacagaacttgtaacaaatccggcagctccagcgtcaggaccgggtgc 8957162  T
Q  235 cggagcggatgagggactaaggtcttgagccgaggccac 273  Q
     |||||  | || |||||||||||||| |||||||||||    
T  8957161 tggagctaacgacggactaaggtcttgggccgaggccac 8957123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 91 - 270
Target Start/End: Complemental strand, 9015606 - 9015428
Alignment:
Q  91 ttccacgaaatccaccagaaaattagtgggttcatgatgttttcagttcttcaagatggcaagcattgacaacacaattgaagctccgatcatagcaact 190  Q
    ||||| ||||||||| ||||||| |||||  |||| || |||| |||  || |||||||| ||||||||||| ||||||||| |||| | |||||  |||    
T  9015606 ttccatgaaatccacaagaaaataagtggaatcataatttttt-agtgtttgaagatggcgagcattgacaatacaattgaaactccaaccatagtcact 9015508  T
Q  191 gaactcgtaacagatccacaagccccaacatcaggacctggtgccggagcggatgagggactaaggtcttgagccgaggc 270  Q
    ||| | |||||| |||||   || ||  |||||||||||||||||||||   | ||||| || |||||||||||||||||    
T  9015507 gaatttgtaacatatccagctgctccggcatcaggacctggtgccggagacaacgaggggctgaggtcttgagccgaggc 9015428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 133 - 270
Target Start/End: Complemental strand, 8988487 - 8988350
Alignment:
Q  133 tcagttcttcaagatggcaagcattgacaacacaattgaagctccgatcatagcaactgaactcgtaacagatccacaagccccaacatcaggacctggt 232  Q
    ||||||||| ||||| || ||||||||||  || |||||||||||||||||||| ||  |||| ||| |||| |    ||| ||||| ||||||||||||    
T  8988487 tcagttcttgaagatagcgagcattgacagtacgattgaagctccgatcatagccacataacttgtagcagaactggcagctccaacgtcaggacctggt 8988388  T
Q  233 gccggagcggatgagggactaaggtcttgagccgaggc 270  Q
    || ||||   | ||||||||||||||||| ||||||||    
T  8988387 gctggagacaacgagggactaaggtcttgggccgaggc 8988350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 268
Target Start/End: Complemental strand, 9112239 - 9112114
Alignment:
Q  143 aagatggcaagcattgacaacacaattgaagctccgatcatagcaactgaactcgtaacagatccacaagccccaacatcaggacctggtgccggagcgg 242  Q
    ||||| ||||||||||||||||||||  ||||||| |||||||| |||| | | |||| |||||||  ||| ||   ||||||  |||||||||||||      
T  9112239 aagatagcaagcattgacaacacaatcaaagctcccatcatagccactggatttgtaagagatccaacagctccggtatcaggtgctggtgccggagcca 9112140  T
Q  243 atgagggactaaggtcttgagccgag 268  Q
    | |||||||| |||||||| ||||||    
T  9112139 acgagggactgaggtcttgggccgag 9112114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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