View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5571-Insertion-3 (Length: 144)
Name: NF5571-Insertion-3
Description: NF5571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5571-Insertion-3 |
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Alignment Details
Target: chr7 (Bit Score: 87; Significance: 4e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 4e-42
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 31489649 - 31489530
Alignment:
| Q |
8 |
atataatcttagtcaaacaaacataannnnnnnagaaattaatcacttcctatcattctcatcaccgttgtgaaacattagtttacaaactcatatcatt |
107 |
Q |
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| T |
31489649 |
atataatcttagtcaaacaaacataatttttttagaaattaatcacttcctatcattctcattgccgttgtgaaacattagtttacaaactcatatcatt |
31489550 |
T |
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| Q |
108 |
ctttttcctcccaatcatcc |
127 |
Q |
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||||||||||||| |||||| |
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| T |
31489549 |
ctttttcctcccattcatcc |
31489530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 70
Target Start/End: Complemental strand, 24427048 - 24427019
Alignment:
| Q |
41 |
agaaattaatcacttcctatcattctcatc |
70 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
24427048 |
agaaattaatcacttcctatcattctcatc |
24427019 |
T |
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