View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5572-Insertion-1 (Length: 525)
Name: NF5572-Insertion-1
Description: NF5572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5572-Insertion-1 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 7 - 525
Target Start/End: Original strand, 30296967 - 30297485
Alignment:
| Q |
7 |
agaatcaagaatgtacagtccttagaaacagctcttgcttctcaatcattcatacaacttggacttctaacaggcttaccgatgatgatggaaataggcc |
106 |
Q |
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| T |
30296967 |
agaatcaagaatgtacagtccttagaaacagctcttgcttctcaatcattcatacaacttggacttctaacaggcttaccgatgatgatggaaataggcc |
30297066 |
T |
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| Q |
107 |
tcgagagaggtttcctaacagccctcaaagattttatcctcatgcagttacagcttgcagctgttttcttcacattctcccttggaacaaaaacacatta |
206 |
Q |
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| T |
30297067 |
tcgagagaggtttcctaacagccctcaaagattttatcctcatgcagttacagcttgcagctgttttcttcacattctcccttggaacaaaaacacatta |
30297166 |
T |
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| Q |
207 |
ctatggcagaacaattttgcacggaggcgcgaaatacagaccaaccggacgcaaagttgtcttccacgctagcttcactgaaaactatagattatactcg |
306 |
Q |
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| T |
30297167 |
ctatggcagaacaattttgcacggaggcgcgaaatacagaccaaccggacgcaaagttgtcttccacgctagcttcactgaaaactatagattatactcg |
30297266 |
T |
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| Q |
307 |
agaagtcactttgtaaaagcgtttgagctaatgcttcttttggttgtttataacatgttcagaaaatcttatcaaagtaacatgacatatgtgttgataa |
406 |
Q |
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| T |
30297267 |
agaagtcactttgtaaaagcgtttgagctaatgctgcttttggttgtttataacatgttcagaaaatcttatcaaagtaacatgacatatgtgttgataa |
30297366 |
T |
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| Q |
407 |
cttacgcgatttggttcatgtctttgacttggttgtgtgcgccttttcttttcaaccctgccggattcagttggactaaggcggtagatgattggaaaga |
506 |
Q |
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| T |
30297367 |
cttacgcgatttggttcatgtctttgacttggttgtgtgcgccttttcttttcaaccctgccggattcagttggactaaggcggtagatgattggaaaga |
30297466 |
T |
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| Q |
507 |
gtggaataaatggatcaga |
525 |
Q |
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| T |
30297467 |
gtggaataaatggatcaga |
30297485 |
T |
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