View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5572_high_1 (Length: 263)

Name: NF5572_high_1
Description: NF5572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5572_high_1
NF5572_high_1
[»] chr7 (3 HSPs)
chr7 (17-256)||(24692687-24692926)
chr7 (17-256)||(47506032-47506272)
chr7 (17-256)||(20653348-20653586)
[»] chr4 (1 HSPs)
chr4 (17-256)||(25269511-25269753)
[»] chr3 (3 HSPs)
chr3 (37-211)||(15291287-15291462)
chr3 (209-256)||(15293626-15293673)
chr3 (94-182)||(10810672-10810764)
[»] chr5 (1 HSPs)
chr5 (58-192)||(1662640-1662776)
[»] chr2 (1 HSPs)
chr2 (58-191)||(18035008-18035144)
[»] chr1 (1 HSPs)
chr1 (58-176)||(23497738-23497859)
[»] chr6 (2 HSPs)
chr6 (63-153)||(11775673-11775765)
chr6 (218-256)||(7897393-7897431)


Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 256
Target Start/End: Complemental strand, 24692926 - 24692687
Alignment:
Q  17 aacaaatgtgttgacatacttgcaaacattggcctatctactgcttctcatgtttggttttctcaaccttctgataatattagggcagactta--gacta 114  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||  |||||    
T  24692926 aacaaatgtgttgacatacttgcaaacattggcctatctactacttctcatgtttggttttctcaacctcctgataatattagggcagacttagtgacta 24692827  T
Q  115 ataagttaggtttacctaactttagaattgcttaaccttgaggttttggttttatgtcccccctctttcttgttttttgtacctttcctttatctatata 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  24692826 ataagttaggtttacctaactttagaattgcttaaccttgaggttttggttttatgtcccccctctttcttg--ttttgtacctttcctttatctatata 24692729  T
Q  215 tatattttggggttgcagcagccgctctaatctcctttgctt 256  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  24692728 tatattttggggttgcagcagccgctctaatctcctttgctt 24692687  T

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Target: chr7; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 17 - 256
Target Start/End: Complemental strand, 47506272 - 47506032
Alignment:
Q  17 aacaaatgtgttgacatacttgcaaacattggcctatctactgcttctcatgtttggttttctcaaccttctgataatattagggcagactta--gacta 114  Q
    |||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||  |||||    
T  47506272 aacaaatgtgctgacatacttggaaacattggtctatctactgcttctcatgtttgtttttctcaacctcctgataatattagggcagacttagtgacta 47506173  T
Q  115 ataagttaggtttacctaactttagaattgcttaaccttga-ggttttggttttatgtcccccctctttcttgttttttgtacctttcctttatctatat 213  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||| ||||||||| |||||||    
T  47506172 ataagctaggtttacctaactttagaattgcttaaccttgagggttttggttttatgtcccccctctttcttg--ttttgtatctttcctttttctatat 47506075  T
Q  214 atatattttggggttgcagcagccgctctaatctcctttgctt 256  Q
    ||||||||||||||||||||||||||  |||||||||||||||    
T  47506074 atatattttggggttgcagcagccgcggtaatctcctttgctt 47506032  T

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Target: chr7; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 17 - 256
Target Start/End: Original strand, 20653348 - 20653586
Alignment:
Q  17 aacaaatgtgttgacatacttgcaaacattggcctatctactgcttctcatgtttggttttctcaaccttctgataatattagggcagactta--gacta 114  Q
    |||||||||| | ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||  |||||    
T  20653348 aacaaatgtgctaacatacttgcaaacattggtctacctactgcttctcatgtttggttttctcaacctcctgataatattagggaagacttagtgacta 20653447  T
Q  115 ataagttaggtttacctaactttagaattgcttaaccttga-ggttttggttttatgt-cccccctctttcttgttttttgtacctttcctttatctata 212  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||  ||||||| ||||||||| ||||||    
T  20653448 ataagctaggtttacctaactttagaattgcttaaccttgagggttttggttttttgtccccccctctttcttg--ttttgtaactttcctttttctata 20653545  T
Q  213 tatatattttggggttgcagcagccgctctaatctcctttgctt 256  Q
    ||||||||||||||||   ||||||||| |||||||||||||||    
T  20653546 tatatattttggggtt---gcagccgctgtaatctcctttgctt 20653586  T

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Target: chr4 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 17 - 256
Target Start/End: Complemental strand, 25269753 - 25269511
Alignment:
Q  17 aacaaatgtgttgacatacttgcaaacattggcctatctactgcttctcatgtttggttttctcaaccttctgataatattagggcagactta--gacta 114  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||  |||||    
T  25269753 aacaaatgtgttgacatacttgcaaacattggcctatcgactgcttctcatgtttggttttctcaacctcctgataatgttagggcagacttagtgacta 25269654  T
Q  115 ataagttaggtttacctaactttagaattgcttaaccttgagg-ttttggttttatgtcccccctctttcttgttttttgtacctttcctttatc--tat 211  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||   |||||||||||||||||||  |||    
T  25269653 ataagttaggtttacctaactttcgaattgcttaaccttgaggattttggttttatgtcccccctctttcttg--ctttgtacctttcctttatctatat 25269556  T
Q  212 atatatattttggggttgcagcagccgctctaatctcctttgctt 256  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||    
T  25269555 atatatattttggggttgcagcagccgctgtaacctcctttgctt 25269511  T

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Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 37 - 211
Target Start/End: Original strand, 15291287 - 15291462
Alignment:
Q  37 tgcaaacattggcctatctactgcttctcatgtttggttttctcaaccttctgataatattagggcagactta--gactaataagttaggtttacctaac 134  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||| ||||||||||||||    
T  15291287 tgcaaacattggtttatctactgcttctcatgtttggttttctcaacctcctgataatattagggcagacttagtgactaataagctaggtttacctaac 15291386  T
Q  135 tttagaattgcttaaccttga-ggttttggttttatgtcccccctctttcttgttttttgtacctttcctttatctat 211  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  15291387 tttagaattgcttaaccttgagggttttggttttatgtcccccctctttcttg--ttttgtacctttcctttatctat 15291462  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 256
Target Start/End: Original strand, 15293626 - 15293673
Alignment:
Q  209 tatatatatattttggggttgcagcagccgctctaatctcctttgctt 256  Q
    ||||||||||| ||||||||| |||||| ||| |||||||||||||||    
T  15293626 tatatatatatattggggttgtagcagctgctgtaatctcctttgctt 15293673  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 94 - 182
Target Start/End: Complemental strand, 10810764 - 10810672
Alignment:
Q  94 tattagggcagacttagac--taataagttaggtttacctaactttagaattgcttaacc-ttga-ggttttggttttatgtcccccctcttt 182  Q
    ||||||||||||||||| |  |||||||||||||| |||||| |||||  || ||||||| ||||  ||||||||||| | ||||||||||||    
T  10810764 tattagggcagacttagtcgctaataagttaggttcacctaattttagggttacttaacctttgattgttttggttttttatcccccctcttt 10810672  T

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Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 58 - 192
Target Start/End: Complemental strand, 1662776 - 1662640
Alignment:
Q  58 tgcttctcatgtttggttttctcaaccttctgataatattagggcagactta--gactaataagttaggtttacctaactttagaattgcttaaccttga 155  Q
    |||||||||||||||||||||||| ||| |||||| ||||||||||||||||  |   ||||||||||||||| |||| || |||||| ||||||         
T  1662776 tgcttctcatgtttggttttctcatcctcctgatagtattagggcagacttattgcacaataagttaggtttatctaatttcagaatttcttaacgagag 1662677  T
Q  156 ggttttggttttatgtcccccctctttcttgtttttt 192  Q
    ||||||||||||||||||||||||||| || ||||||    
T  1662676 ggttttggttttatgtcccccctcttttttatttttt 1662640  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 191
Target Start/End: Complemental strand, 18035144 - 18035008
Alignment:
Q  58 tgcttctcatgtttggttttctcaaccttctgataatattagggcagacttag---actaataagttaggtttacctaactttagaattgcttaaccttg 154  Q
    ||||||||||||||| |||||||| ||| || ||| |||||||||||||||||   || || ||| ||||||||||| | || | |||| ||||||||||    
T  18035144 tgcttctcatgtttgattttctcatcctcctaatagtattagggcagacttagtgcac-aacaagctaggtttacctgatttcaaaatttcttaaccttg 18035046  T
Q  155 agg-ttttggttttatgtcccccctctttcttgttttt 191  Q
    ||| ||||||||||||||||||||| ||| || |||||    
T  18035045 aggattttggttttatgtcccccctttttttttttttt 18035008  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 176
Target Start/End: Original strand, 23497738 - 23497859
Alignment:
Q  58 tgcttctcatgtttggttttctcaaccttctgataatattagggcagacttag---actaataagttaggtttacctaactttagaattgcttaaccttg 154  Q
    |||||||||||||||||||||||| ||| || ||| |||||||||||||||||   || || ||| ||||||||||||| ||  ||||| |||||| |||    
T  23497738 tgcttctcatgtttggttttctcatcctcctaatagtattagggcagacttagtgcac-aacaagctaggtttacctaatttcggaatttcttaactttg 23497836  T
Q  155 a-ggttttggttttatgtccccc 176  Q
    | |||||||||||||| ||||||    
T  23497837 agggttttggttttatatccccc 23497859  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 153
Target Start/End: Complemental strand, 11775765 - 11775673
Alignment:
Q  63 ctcatgtttggttttctcaaccttctgataatattagggcagacttag--actaataagttaggtttacctaactttagaattgcttaacctt 153  Q
    ||||||||||||||||||||||  ||  || |||||||||| ||||||  ||||||||| ||||||||||||| |||||  || |||||||||    
T  11775765 ctcatgtttggttttctcaaccaccttctattattagggcatacttagttactaataagctaggtttacctaattttagggtttcttaacctt 11775673  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 218 - 256
Target Start/End: Complemental strand, 7897431 - 7897393
Alignment:
Q  218 attttggggttgcagcagccgctctaatctcctttgctt 256  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  7897431 attttggggttgcagcagccgctgtaatctcctttgctt 7897393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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