View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5572_low_1 (Length: 263)
Name: NF5572_low_1
Description: NF5572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5572_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 256
Target Start/End: Complemental strand, 24692926 - 24692687
Alignment:
| Q |
17 |
aacaaatgtgttgacatacttgcaaacattggcctatctactgcttctcatgtttggttttctcaaccttctgataatattagggcagactta--gacta |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
24692926 |
aacaaatgtgttgacatacttgcaaacattggcctatctactacttctcatgtttggttttctcaacctcctgataatattagggcagacttagtgacta |
24692827 |
T |
|
| Q |
115 |
ataagttaggtttacctaactttagaattgcttaaccttgaggttttggttttatgtcccccctctttcttgttttttgtacctttcctttatctatata |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24692826 |
ataagttaggtttacctaactttagaattgcttaaccttgaggttttggttttatgtcccccctctttcttg--ttttgtacctttcctttatctatata |
24692729 |
T |
|
| Q |
215 |
tatattttggggttgcagcagccgctctaatctcctttgctt |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24692728 |
tatattttggggttgcagcagccgctctaatctcctttgctt |
24692687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 17 - 256
Target Start/End: Complemental strand, 47506272 - 47506032
Alignment:
| Q |
17 |
aacaaatgtgttgacatacttgcaaacattggcctatctactgcttctcatgtttggttttctcaaccttctgataatattagggcagactta--gacta |
114 |
Q |
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|
|||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
47506272 |
aacaaatgtgctgacatacttggaaacattggtctatctactgcttctcatgtttgtttttctcaacctcctgataatattagggcagacttagtgacta |
47506173 |
T |
|
| Q |
115 |
ataagttaggtttacctaactttagaattgcttaaccttga-ggttttggttttatgtcccccctctttcttgttttttgtacctttcctttatctatat |
213 |
Q |
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|
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||| |
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| T |
47506172 |
ataagctaggtttacctaactttagaattgcttaaccttgagggttttggttttatgtcccccctctttcttg--ttttgtatctttcctttttctatat |
47506075 |
T |
|
| Q |
214 |
atatattttggggttgcagcagccgctctaatctcctttgctt |
256 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
47506074 |
atatattttggggttgcagcagccgcggtaatctcctttgctt |
47506032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 17 - 256
Target Start/End: Original strand, 20653348 - 20653586
Alignment:
| Q |
17 |
aacaaatgtgttgacatacttgcaaacattggcctatctactgcttctcatgtttggttttctcaaccttctgataatattagggcagactta--gacta |
114 |
Q |
| |
|
|||||||||| | ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||| |
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|
| T |
20653348 |
aacaaatgtgctaacatacttgcaaacattggtctacctactgcttctcatgtttggttttctcaacctcctgataatattagggaagacttagtgacta |
20653447 |
T |
|
| Q |
115 |
ataagttaggtttacctaactttagaattgcttaaccttga-ggttttggttttatgt-cccccctctttcttgttttttgtacctttcctttatctata |
212 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||| ||||||| ||||||||| |||||| |
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| T |
20653448 |
ataagctaggtttacctaactttagaattgcttaaccttgagggttttggttttttgtccccccctctttcttg--ttttgtaactttcctttttctata |
20653545 |
T |
|
| Q |
213 |
tatatattttggggttgcagcagccgctctaatctcctttgctt |
256 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||||||| |
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|
| T |
20653546 |
tatatattttggggtt---gcagccgctgtaatctcctttgctt |
20653586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 17 - 256
Target Start/End: Complemental strand, 25269753 - 25269511
Alignment:
| Q |
17 |
aacaaatgtgttgacatacttgcaaacattggcctatctactgcttctcatgtttggttttctcaaccttctgataatattagggcagactta--gacta |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| |
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|
| T |
25269753 |
aacaaatgtgttgacatacttgcaaacattggcctatcgactgcttctcatgtttggttttctcaacctcctgataatgttagggcagacttagtgacta |
25269654 |
T |
|
| Q |
115 |
ataagttaggtttacctaactttagaattgcttaaccttgagg-ttttggttttatgtcccccctctttcttgttttttgtacctttcctttatc--tat |
211 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
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|
| T |
25269653 |
ataagttaggtttacctaactttcgaattgcttaaccttgaggattttggttttatgtcccccctctttcttg--ctttgtacctttcctttatctatat |
25269556 |
T |
|
| Q |
212 |
atatatattttggggttgcagcagccgctctaatctcctttgctt |
256 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
25269555 |
atatatattttggggttgcagcagccgctgtaacctcctttgctt |
25269511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 37 - 211
Target Start/End: Original strand, 15291287 - 15291462
Alignment:
| Q |
37 |
tgcaaacattggcctatctactgcttctcatgtttggttttctcaaccttctgataatattagggcagactta--gactaataagttaggtttacctaac |
134 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||| |
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|
| T |
15291287 |
tgcaaacattggtttatctactgcttctcatgtttggttttctcaacctcctgataatattagggcagacttagtgactaataagctaggtttacctaac |
15291386 |
T |
|
| Q |
135 |
tttagaattgcttaaccttga-ggttttggttttatgtcccccctctttcttgttttttgtacctttcctttatctat |
211 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
15291387 |
tttagaattgcttaaccttgagggttttggttttatgtcccccctctttcttg--ttttgtacctttcctttatctat |
15291462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 256
Target Start/End: Original strand, 15293626 - 15293673
Alignment:
| Q |
209 |
tatatatatattttggggttgcagcagccgctctaatctcctttgctt |
256 |
Q |
| |
|
||||||||||| ||||||||| |||||| ||| ||||||||||||||| |
|
|
| T |
15293626 |
tatatatatatattggggttgtagcagctgctgtaatctcctttgctt |
15293673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 94 - 182
Target Start/End: Complemental strand, 10810764 - 10810672
Alignment:
| Q |
94 |
tattagggcagacttagac--taataagttaggtttacctaactttagaattgcttaacc-ttga-ggttttggttttatgtcccccctcttt |
182 |
Q |
| |
|
||||||||||||||||| | |||||||||||||| |||||| ||||| || ||||||| |||| ||||||||||| | |||||||||||| |
|
|
| T |
10810764 |
tattagggcagacttagtcgctaataagttaggttcacctaattttagggttacttaacctttgattgttttggttttttatcccccctcttt |
10810672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 58 - 192
Target Start/End: Complemental strand, 1662776 - 1662640
Alignment:
| Q |
58 |
tgcttctcatgtttggttttctcaaccttctgataatattagggcagactta--gactaataagttaggtttacctaactttagaattgcttaaccttga |
155 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||| |||||||||||||||| | ||||||||||||||| |||| || |||||| |||||| |
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|
| T |
1662776 |
tgcttctcatgtttggttttctcatcctcctgatagtattagggcagacttattgcacaataagttaggtttatctaatttcagaatttcttaacgagag |
1662677 |
T |
|
| Q |
156 |
ggttttggttttatgtcccccctctttcttgtttttt |
192 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||| |
|
|
| T |
1662676 |
ggttttggttttatgtcccccctcttttttatttttt |
1662640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 191
Target Start/End: Complemental strand, 18035144 - 18035008
Alignment:
| Q |
58 |
tgcttctcatgtttggttttctcaaccttctgataatattagggcagacttag---actaataagttaggtttacctaactttagaattgcttaaccttg |
154 |
Q |
| |
|
||||||||||||||| |||||||| ||| || ||| ||||||||||||||||| || || ||| ||||||||||| | || | |||| |||||||||| |
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|
| T |
18035144 |
tgcttctcatgtttgattttctcatcctcctaatagtattagggcagacttagtgcac-aacaagctaggtttacctgatttcaaaatttcttaaccttg |
18035046 |
T |
|
| Q |
155 |
agg-ttttggttttatgtcccccctctttcttgttttt |
191 |
Q |
| |
|
||| ||||||||||||||||||||| ||| || ||||| |
|
|
| T |
18035045 |
aggattttggttttatgtcccccctttttttttttttt |
18035008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 176
Target Start/End: Original strand, 23497738 - 23497859
Alignment:
| Q |
58 |
tgcttctcatgtttggttttctcaaccttctgataatattagggcagacttag---actaataagttaggtttacctaactttagaattgcttaaccttg |
154 |
Q |
| |
|
|||||||||||||||||||||||| ||| || ||| ||||||||||||||||| || || ||| ||||||||||||| || ||||| |||||| ||| |
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|
| T |
23497738 |
tgcttctcatgtttggttttctcatcctcctaatagtattagggcagacttagtgcac-aacaagctaggtttacctaatttcggaatttcttaactttg |
23497836 |
T |
|
| Q |
155 |
a-ggttttggttttatgtccccc |
176 |
Q |
| |
|
| |||||||||||||| |||||| |
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|
| T |
23497837 |
agggttttggttttatatccccc |
23497859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 153
Target Start/End: Complemental strand, 11775765 - 11775673
Alignment:
| Q |
63 |
ctcatgtttggttttctcaaccttctgataatattagggcagacttag--actaataagttaggtttacctaactttagaattgcttaacctt |
153 |
Q |
| |
|
|||||||||||||||||||||| || || |||||||||| |||||| ||||||||| ||||||||||||| ||||| || ||||||||| |
|
|
| T |
11775765 |
ctcatgtttggttttctcaaccaccttctattattagggcatacttagttactaataagctaggtttacctaattttagggtttcttaacctt |
11775673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 218 - 256
Target Start/End: Complemental strand, 7897431 - 7897393
Alignment:
| Q |
218 |
attttggggttgcagcagccgctctaatctcctttgctt |
256 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
7897431 |
attttggggttgcagcagccgctgtaatctcctttgctt |
7897393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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