View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5574-Insertion-1 (Length: 418)
Name: NF5574-Insertion-1
Description: NF5574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5574-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 123 - 417
Target Start/End: Original strand, 41570116 - 41570408
Alignment:
| Q |
123 |
ctaactaagcaccgtcatttatataaaaaagctatcattcattacacattactcatcacaacaaacttcataattagcaaactactactacttctataag |
222 |
Q |
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| T |
41570116 |
ctaactaagcaccgtcatttatataaaaa-gctatcattcattacacattactcatcacaacaaacttcataattagcaaactactactacttctataag |
41570214 |
T |
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| Q |
223 |
tccattacttcctcaactcttattttttcacttaacacttcacacttcacaatggagtacggaaggttaggactatccgaccctggtggctcgacaccct |
322 |
Q |
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| T |
41570215 |
tccattacttcctca-ctcttattttttcacttaacacttcacacttcacaatggagtacggaaggttaggactatccgaccctggtggctcgacaccct |
41570313 |
T |
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| Q |
323 |
cccaacctataataaacactaccaaacctagatcttcaaagaagaagatcattttcctctcactcctcgccgtgttactaatcatcgcctccact |
417 |
Q |
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| T |
41570314 |
cccaacctataataaacactaccaaacctagatcttcaaagaagaagatcattttcctctcactcctcgccgtgttactaatcatcgcctccact |
41570408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 7 - 129
Target Start/End: Original strand, 41569951 - 41570070
Alignment:
| Q |
7 |
agtagccagctcattcctcagtagacatagacttcacaccaacctcactaaaaacaaccacatacacattacactgttcttcactctttcactatactac |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
41569951 |
agtagccagctcattcctcagtagacatagacttcacaccaacctcactaaaaacaaccacatacacattacactgttcttcactctttcacta---tac |
41570047 |
T |
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| Q |
107 |
tagattactagtactactaacta |
129 |
Q |
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| T |
41570048 |
tagattactagtactactaacta |
41570070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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