View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5574-Insertion-4 (Length: 525)
Name: NF5574-Insertion-4
Description: NF5574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5574-Insertion-4 |
 | |
|
| [»] scaffold0070 (3 HSPs) |
| | |
|
| [»] scaffold0955 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-106; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 8 - 472
Target Start/End: Original strand, 25384213 - 25384658
Alignment:
| Q |
8 |
ggatcatcaaattattaaattagagcaacttgcacaacttcagcttcaatattatcaaagcatagatacttacgaaaatcaagtatttcatgaggcaacg |
107 |
Q |
| |
|
|||||| ||||||| |||||||| ||||||||||||||||||||| ||||| ||| |||||||||||||||| ||||||||| || ||||||||||||| |
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|
| T |
25384213 |
ggatcaccaaattactaaattagtgcaacttgcacaacttcagctacaatactataaaagcatagatacttatgaaaatcaactaagtcatgaggcaacg |
25384312 |
T |
|
| Q |
108 |
gttcaacgcataactgaacttaagatgaagaattataaacgaagcgtccgcatgcttcgtttgacatgtgagaggctttcatacatgaaggattcagaag |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||| ||||| |||||||||| |
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|
| T |
25384313 |
gttcaacgcataactgaacttaagatgaaga---------gaagcgtccgcatgcttcgtttgactcatgagatgctttcatatatgaaagattcagaag |
25384403 |
T |
|
| Q |
208 |
cttatgaaaaactattttagttgcattataaatgttcttcttcttttacatatttatcaatgtatgtgttccaaa----ttattattttttctctgaaag |
303 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||| | |||| | |||||| |
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|
| T |
25384404 |
cttatgaaaaactattttaggtgcattataaatgtgcttcttcttttacatatttatcaatgtatgtgttacaaaacttttattttattttat-tgaaag |
25384502 |
T |
|
| Q |
304 |
aatgtgttaccaaaatttgattaacacatggtttagcgcttgtagttggagcacaatgtgtgtgacagtgagttttgtaaactcatggatatccaaataa |
403 |
Q |
| |
|
||||||||| ||| ||| || | |||| ||||||||| ||||||||||||||||||||||| || |||| ||| || |||||| ||||||| |||||| |
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|
| T |
25384503 |
aatgtgttataaaactttaatcagcacaaagtttagcgcatgtagttggagcacaatgtgtgtaactgtgattttagtgaactcaaggatatcaaaataa |
25384602 |
T |
|
| Q |
404 |
agattgaagtaatattttcttaaatagctttaaacaacaagcaaactctccaatgtttcttgaggcata |
472 |
Q |
| |
|
||||| |||| ||||| |||||||||||| ||||||| |||| |||||||||||||| |
|
|
| T |
25384603 |
agatt-------------cttagatagcattaaacaacaagtaaactcttcaatttttcttgaggcata |
25384658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 8 - 277
Target Start/End: Original strand, 25692562 - 25692822
Alignment:
| Q |
8 |
ggatcatcaaattattaaattagagcaacttgcacaacttcagcttcaatattatcaaagcatagatacttacgaaaatcaagtatttcatgaggcaacg |
107 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
25692562 |
ggatcatcaaattactaaactagagcaacttgcacaacttcagcttcaatattataaaagcatagatacttacgaaaatcaaataagtcatgaggcaacg |
25692661 |
T |
|
| Q |
108 |
gttcaacgcataactgaacttaagatgaagaattataaacgaagcgtccgcatgcttcgtttgacatgtgagaggctttcatacatgaaggattcagaag |
207 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||| ||||||||||||| | |||||||||| |
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|
| T |
25692662 |
gttcaatgcataactgaacttaagatgaaga---------gaagcatccgcatgcttcgtttgacacgtgagatgctttcatacatggaagattcagaag |
25692752 |
T |
|
| Q |
208 |
cttatgaaaaactattttagttgcattataaatgttcttcttcttttacatatttatcaatgtatgtgtt |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||||||| || |||||||||||||||||| |
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|
| T |
25692753 |
cttatgaaaaactattttagttgcattatagatgtgcttcttcttttagatgtttatcaatgtatgtgtt |
25692822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 52 - 444
Target Start/End: Original strand, 25488161 - 25488536
Alignment:
| Q |
52 |
ttcaatattatcaaagcatagatacttacgaaaatcaagtatttcatgaggcaacggttcaacgcataactgaacttaagatgaagaattataaacgaag |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||| |||| |
|
|
| T |
25488161 |
ttcaatattatcaaagcatagatacttacgaaaatcaagtaagtcatgaggcaacggttcatcgcataacagaacttaagatgaaga---------gaag |
25488251 |
T |
|
| Q |
152 |
cgtccgcat----gcttcgtttgacatgtgagaggctttcatacatgaaggattcagaagcttatgaaaaactattttagttgcattataaatgttcttc |
247 |
Q |
| |
|
||||||||| ||||||||||||| |||| | ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
25488252 |
cgtccgcatgcatgcttcgtttgacacgtgaaatgctttcatacatggaagattcagaagcttatgaaaaactattttagttgcattataaatgtggttc |
25488351 |
T |
|
| Q |
248 |
ttcttttacatatttatcaatgtatgtgttccaaa--ttattattttttctctgaaagaatgtgttaccaaaatttgattaacacatggtttagcgcttg |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| || || |||||| | |||||||||||||||| ||| |||||| | |||| ||| | |
|
|
| T |
25488352 |
ttcttttacatatttatcaatgtatgtgttaaaaaacttttttttttttat-tgaaagaatgtgttacaaaactttgatcagcacaaagttaa------- |
25488443 |
T |
|
| Q |
346 |
tagttggagcacaatgtgtgtgacagtgagttttgtaaactcatggatatccaaataaagattgaagtaatattttcttaaatagctttaaacaacaag |
444 |
Q |
| |
|
||||||||||||| |||| |||||||| |||||||| ||||||| |||||||||| | ||| |||||||||| ||| || |||||| ||||| |
|
|
| T |
25488444 |
------gagcacaatgtgtctgactgtgagtttagtaaactcgaggatatcaaaataaagatgggagtgatattttcttcaattgcattaaaccacaag |
25488536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 56 - 277
Target Start/End: Original strand, 25798558 - 25798770
Alignment:
| Q |
56 |
atattatcaaagcatagatacttacgaaaatcaagtatttcatgaggcaacggttcaacgcataactgaacttaagatgaagaattataaacgaagcgtc |
155 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||| ||||| || |
|
|
| T |
25798558 |
atattataagagcatagatacttacgaaaatcaagtaagtcatgaggcaacggttcaatgcataaaagaacttaagatgaaga---------gaagcatc |
25798648 |
T |
|
| Q |
156 |
cgcatgcttcgtttgacatgtgagaggctttcatacatgaaggattcagaagcttatgaaaaactattttagttgcattataaatgttcttcttctttta |
255 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
25798649 |
cgcatgcttcgtttgacacgtgagatgctttcatacatggaagattcagaagcttatgaaaaactattttagttgcattataaatgtggttcttctttta |
25798748 |
T |
|
| Q |
256 |
catatttatcaatgtatgtgtt |
277 |
Q |
| |
|
|||||| ||||||||||||||| |
|
|
| T |
25798749 |
catattaatcaatgtatgtgtt |
25798770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 68 - 208
Target Start/End: Original strand, 25602698 - 25602836
Alignment:
| Q |
68 |
catagatacttacgaaaatcaagtatttcatgaggcaacggttcaacgcataactgaacttaagatga--agaattataaacgaagcgtccgcatgcttc |
165 |
Q |
| |
|
|||||||||||| |||||| |||| | |||||||||||||||| |||||||||| ||||||||||||| |||| | | | | || ||||||||| |
|
|
| T |
25602698 |
catagatacttatgaaaataaagtttgtcatgaggcaacggttgaacgcataacagaacttaagatgaagagaagtgtctgcaa----tctgcatgcttc |
25602793 |
T |
|
| Q |
166 |
gtttgacatgtgagaggctttcatacatgaaggattcagaagc |
208 |
Q |
| |
|
|||||||| |||||| ||||||||||||||| ||||||||||| |
|
|
| T |
25602794 |
gtttgacacgtgagatgctttcatacatgaaagattcagaagc |
25602836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 15 - 277
Target Start/End: Complemental strand, 38751 - 38498
Alignment:
| Q |
15 |
caaattattaaattagagcaacttgcacaacttcagcttcaatattatcaaagcatagatacttacgaaaatcaagtatttcatgaggcaacggttcaac |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
38751 |
caaattattaaattagagcaacttgcacaacttcagcttcaatattataaaagcatagatacttacgaaaatcaagtaagtcatgaggcaacggttcaac |
38652 |
T |
|
| Q |
115 |
gcataactgaacttaagatgaagaattataaacgaagcgtccgcatgcttcgtttgacatgtgagaggctttcatacatgaaggattcagaagcttatga |
214 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||| | ||||||||||||||||| |
|
|
| T |
38651 |
gcataactgaacttaagatgaaga---------gaagcgtccgcatgcttcgtttgacacgtgagatgctttcatacatggaagattcagaagcttatga |
38561 |
T |
|
| Q |
215 |
aaaactattttagttgcattataaatgttcttcttcttttacatatttatcaatgtatgtgtt |
277 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
38560 |
aaaactattttagttgcattataaatgtggttcttcttttacatatttatcaatggatgtgtt |
38498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 8 - 282
Target Start/End: Complemental strand, 19361 - 19096
Alignment:
| Q |
8 |
ggatcatcaaattattaaattagagcaacttgcacaacttcagcttcaatattatcaaagcatagatacttacgaaaatcaagtatttcatgaggcaacg |
107 |
Q |
| |
|
|||||||||||||| || | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||| ||||| |
|
|
| T |
19361 |
ggatcatcaaattactatactagagcaacttgcacaacttcagcttcaatattataaaagcatagatacttacgaaaattaagtaagtcatgagtcaacg |
19262 |
T |
|
| Q |
108 |
gttcaacgcataactgaacttaagatgaagaattataaacgaagcgtccgcatgcttcgtttgacatgtgagaggctttcatacatgaaggattcagaag |
207 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||| | ||||||||||| | |||||||||| |
|
|
| T |
19261 |
gttccacgcataactgaacttaagatgaaga---------gaagcatccgcatgcttcgtttgacacgtgagatgttttcatacatggaagattcagaag |
19171 |
T |
|
| Q |
208 |
cttatgaaaaactattttagttgcattataaatgttcttcttcttttacatatttatcaatgtatgtgttccaaa |
282 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| | |||||| |||||||||||||| |||||||||||| |||| |
|
|
| T |
19170 |
cttataaaaaactattttagttgtgttataaatttgcttctttttttacatatttattaatgtatgtgttacaaa |
19096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 215 - 282
Target Start/End: Complemental strand, 19098 - 19031
Alignment:
| Q |
215 |
aaaactattttagttgcattataaatgttcttcttcttttacatatttatcaatgtatgtgttccaaa |
282 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
19098 |
aaaactattttagttgcattatagatgtgcttcttcttttacatgtttatcaatgtatgtgttacaaa |
19031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0955 (Bit Score: 163; Significance: 8e-87; HSPs: 1)
Name: scaffold0955
Description:
Target: scaffold0955; HSP #1
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 15 - 253
Target Start/End: Original strand, 3689 - 3918
Alignment:
| Q |
15 |
caaattattaaattagagcaacttgcacaacttcagcttcaatattatcaaagcatagatacttacgaaaatcaagtatttcatgaggcaacggttcaac |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3689 |
caaattattaaattagagcaacttgcacaacttcagcttcaatattataaaagcatagatacttacgaaaatcaagtaagtcatgaggcaacggttcaac |
3788 |
T |
|
| Q |
115 |
gcataactgaacttaagatgaagaattataaacgaagcgtccgcatgcttcgtttgacatgtgagaggctttcatacatgaaggattcagaagcttatga |
214 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||| |||||||||||||||| |||||| ||||||||||||| | ||||||||||||||||| |
|
|
| T |
3789 |
gcataactgaacttaagatgaaga---------gaagcatccacatgcttcgtttgacacgtgagatgctttcatacatggaagattcagaagcttatga |
3879 |
T |
|
| Q |
215 |
aaaactattttagttgcattataaatgttcttcttcttt |
253 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3880 |
aaaactattttagttgcattataaatgtggttcttcttt |
3918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 64 - 277
Target Start/End: Original strand, 20591921 - 20592124
Alignment:
| Q |
64 |
aaagcatagatacttacgaaaatcaagtatttcatgaggcaacggttcaacgcataactgaacttaagatgaagaattataaacgaagcgtccgcatgct |
163 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||| ||||||||| |||| |||| |||||||||||||||| ||||| |||||||||| |
|
|
| T |
20591921 |
aaagcatagatacttatgaaaatcaagtaagtcatgacgcaacggttgaacgtataatagaacttaagatgaaga---------gaagcatccgcatgct |
20592011 |
T |
|
| Q |
164 |
tcgtttgacatgtgagaggctttcatacatgaaggattcagaagcttatgaaaaactattttagttgcattataaatgttcttcttcttttacatattta |
263 |
Q |
| |
|
|||||||||| |||||| ||||||||||||| | |||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||| |||| |
|
|
| T |
20592012 |
tcgtttgacacgtgagatgctttcatacatggaagattcagaagcttatgaaaa-ctattttagttgcattatagatgtgcttcttcttttacatgttta |
20592110 |
T |
|
| Q |
264 |
tcaatgtatgtgtt |
277 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
20592111 |
tcaatgtatgtgtt |
20592124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 381 - 480
Target Start/End: Complemental strand, 30163196 - 30163097
Alignment:
| Q |
381 |
taaactcatggatatccaaataaagattgaagtaatattttcttaaatagctttaaacaacaagcaaactctccaatgtttcttgaggcatatacgtttt |
480 |
Q |
| |
|
|||||||| || |||| |||||||||| |||| ||||||||||| |||||| |||||| ||||| |||||||||||| ||||||||||||||||| |||| |
|
|
| T |
30163196 |
taaactcagggttatcaaaataaagatggaagaaatattttcttcaatagcattaaaccacaagtaaactctccaatttttcttgaggcatatacttttt |
30163097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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