View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5574_high_2 (Length: 364)
Name: NF5574_high_2
Description: NF5574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5574_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 14 - 347
Target Start/End: Complemental strand, 45323307 - 45322975
Alignment:
| Q |
14 |
agacagcattatgagacaatcattggtatagagtcgaggtttaatgtcccatctcatatattgacatatgaataaaaacacacaaaacatttgaagaaga |
113 |
Q |
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| T |
45323307 |
agacagcattatgagacaatcattggtatagagtcgaggtttaatgtaccatctcatatattgacatatgaataaaaacacacaaaacatttgaagaaga |
45323208 |
T |
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| Q |
114 |
agattgacttaaattgatagatatgacattaacatatacggtttttcaggagatttaaaatcgactaaacaagtggttcattacatcatccttatctttg |
213 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
45323207 |
agattgacttaaattgatagatatgacattaagatatacggtgtttcaggagatttaaaatcgagtaaacaagtggttcattacatcatccttatctttg |
45323108 |
T |
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| Q |
214 |
cattgcatgctggcaaattaaattgtacgattgagatttgagcacttaaccacacctaaccgaacaacgcacgtacatgcatggcatggtgctttcttcc |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45323107 |
cattgcatgctggcaaattaaattgtacgattgagatttgagcacttaaccacacctaaccgaacaacgcacgtacatgcatggcatggtgctttgttcc |
45323008 |
T |
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| Q |
314 |
aaaacaatccataagcaactttttcgaataacat |
347 |
Q |
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|||||||| ||||||||||||||| ||||||||| |
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| T |
45323007 |
aaaacaat-cataagcaactttttggaataacat |
45322975 |
T |
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