View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5574_high_9 (Length: 238)
Name: NF5574_high_9
Description: NF5574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5574_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 3225239 - 3225460
Alignment:
| Q |
1 |
tgaacattagctccacgaccatcaattgttttgtcagaagaaaccatcaattcttggttcaatctaatgaccatgctacgtgcaaaagtgatccataatg |
100 |
Q |
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| T |
3225239 |
tgaacattagctccacgaccatcaattgttttgtcagaagaaaccatcaattcttggttcaatctaatgaccatgctacgtgcaaaagtgatccataatg |
3225338 |
T |
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| Q |
101 |
gtcccttttggacaacaccaaatctaagggttccaggtttagggtttaccatgtcattatcagactcatcagtgaccacatagattggacctccaagccc |
200 |
Q |
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| T |
3225339 |
gtcccttttggacagcaccaaatctaagggttccaggtttagggtttaccatgtcattatcagactcatcagtgaccacatagattggacctccaagccc |
3225438 |
T |
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| Q |
201 |
accagttgcctttcttccaaag |
222 |
Q |
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|||||||| ||||||||||||| |
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| T |
3225439 |
accagttgtctttcttccaaag |
3225460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 151
Target Start/End: Complemental strand, 2045226 - 2045079
Alignment:
| Q |
4 |
acattagctccacgaccatcaattgttttgtcagaagaaaccatcaattcttggttcaatctaatgaccatgctacgtgcaaaagtgatccataatggtc |
103 |
Q |
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||||| ||||||||||| || || || ||||| || |||||||| || ||||| ||||| ||||||||||| ||||| ||| | ||||| | ||||| |
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| T |
2045226 |
acattggctccacgaccgtcgatggtcttgtcggatgaaaccattaactcttgagtcaatgtaatgaccatgttacgttggaaaataatccaaagtggtc |
2045127 |
T |
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| Q |
104 |
ccttttggacaacaccaaatctaagggttccaggtttagggtttacca |
151 |
Q |
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| T |
2045126 |
ccttttgaacggcaccaaatcggagagttccaggtcttgggttcacca |
2045079 |
T |
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