View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5574_low_1 (Length: 449)
Name: NF5574_low_1
Description: NF5574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5574_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 435
Target Start/End: Complemental strand, 28396713 - 28396265
Alignment:
| Q |
1 |
acaacaaaaatcaagaaatttaacttcacaattaattaagaatttcttgatggaatgacctagaatttccaaaccgctgattggatcacgtgaatgttat |
100 |
Q |
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| T |
28396713 |
acaacaacaatcaagaaatttaacttcacaattaattaagaatttcttgatggaatgacctagaatttccaaaccgctgattggatcacgtgaatgttat |
28396614 |
T |
|
| Q |
101 |
gtcagagctgtctggcctctccaatttgattgtctgtcaaacaattaaaaaatactcttcca-nnnnnnnnattnnnnnnnnctcttgataataataata |
199 |
Q |
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| T |
28396613 |
gtcagagctgtctggcctccccaatttgattgtctgtcaaacaattaaaaaatactcttccattttaaaaaaaaaaaaaaaactcttgataataataata |
28396514 |
T |
|
| Q |
200 |
aatgataaatgcaacaaagaggtcaaatagacatgtttgaacttgaaactaagacggtcccttggttctgtagggtacag-cactatttctactaat--- |
295 |
Q |
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| T |
28396513 |
aatgataaatgcaacaaagaggtcaaatagacatgtttgaacttgaaactaggacggtcccttggttctgtagggtacagccactatttctactaattgg |
28396414 |
T |
|
| Q |
296 |
---------tnnnnnnnttgctatatgaccttgttctactgcttctgcatgtgcaccaccatcaactatacatgtttgatattggtcaaaccctaataag |
386 |
Q |
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| T |
28396413 |
ggtggggggtgggggtgttgctatatggccttgttctactgcttctgcatgtgcaccaccatcaactatacatgtttgatattggtcaaaccctaataag |
28396314 |
T |
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| Q |
387 |
aagggtccctgtcctcaagtgcacaaaaacaacgagtccaattggttcc |
435 |
Q |
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| T |
28396313 |
aagggtccctgtcctcaagtgcacaaaaacaacgagtccaattggttcc |
28396265 |
T |
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