View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5574_low_10 (Length: 219)
Name: NF5574_low_10
Description: NF5574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5574_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 27 - 203
Target Start/End: Complemental strand, 15867802 - 15867626
Alignment:
| Q |
27 |
taataattaacatcctaaaattttatcatttaaaagaaaaagcccttccctcccctctaaaatcccc-tttgaatatccgacaagattctttactaaaaa |
125 |
Q |
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|||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
15867802 |
taataattaacatcctaagattt-atcatttaaaagaaaaagcccttacctcccctctaaaatccccctttgaatatccgacaagattctttactaaaaa |
15867704 |
T |
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| Q |
126 |
gaaaatcagaaatgtctagagatttatgataatattaattatatgctcaaagttgattactaagtttgattttttgat |
203 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15867703 |
gaaaatcagaaatgtctagagatttttgataatattaattatatgctcaaagttgattactaagtttgattttttgat |
15867626 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 21604142 - 21604114
Alignment:
| Q |
2 |
agggggtaaagcaccattaaccctataat |
30 |
Q |
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| T |
21604142 |
agggggtaaagcaccattaaccctataat |
21604114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 29853661 - 29853689
Alignment:
| Q |
1 |
cagggggtaaagcaccattaaccctataa |
29 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
29853661 |
cagggggtaaagcaccattaaccctataa |
29853689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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