View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5574_low_3 (Length: 321)
Name: NF5574_low_3
Description: NF5574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5574_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 34024309 - 34024611
Alignment:
| Q |
1 |
ttgaagtcaatttttagtgcaacatcaccagttttttcttttgtcttgttcttcatagaatttataaattcagaagcagctaaagcattatcaagtatgg |
100 |
Q |
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|||||||||||||||||||||| ||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34024309 |
ttgaagtcaatttttagtgcaatatcactagtttttccttttgtcttgctcttcatagaatttataaattcagaagcagctaaagcattatcaagtatgg |
34024408 |
T |
|
| Q |
101 |
acctg-acttcaacacaaattgattgattaatacttggacataattctcttcaatcaaatgtccatcactttatcaagaattttgtatacagcattacag |
199 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34024409 |
acctggacttcaacacaaattgattgattaatacttggacataattctcttcaatcaaatgtccatcactttatcaagaattttgtatacagcattacag |
34024508 |
T |
|
| Q |
200 |
agtggtagatgtctccaatctttgatcgtgctttgaatctctcccaattggtaacaacacaatattggtgtcattaaaattaggagacaatgcttcatta |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
34024509 |
agtggtagatgtctccaatctttgatcgtgctttgaatctctcccaattggtaacaacacaatattggtgtcattaaaattaggagacaaggcttcatta |
34024608 |
T |
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| Q |
300 |
tca |
302 |
Q |
| |
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||| |
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|
| T |
34024609 |
tca |
34024611 |
T |
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