View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5574_low_5 (Length: 278)
Name: NF5574_low_5
Description: NF5574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5574_low_5 |
 | |
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| [»] scaffold0383 (1 HSPs) |
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Alignment Details
Target: scaffold0383 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold0383
Description:
Target: scaffold0383; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 13864 - 14133
Alignment:
| Q |
1 |
aagcataattctcttaagattcttggcttataatttaataactccttgtttagtgagtaaaatggtacttcaaagcttgttagtaattgcatgtctttct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||| |||||||||| |||||||||||||| |
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|
| T |
13864 |
aagcataattctcttaagattcttggcttatagtttaataactccttgtttagtgagtagaatggtaattcaaaacttgttagtagttgcatgtctttct |
13963 |
T |
|
| Q |
101 |
catggattactttgccacttgttttccttgagattaacatattatttgttttgctaagtaccttaatatgagaatttttagtgattgattgacattggga |
200 |
Q |
| |
|
||| ||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13964 |
cattgattattttgccacttgttttgcttgagattaacatattctttgttttgctaagtaccttaatatgagaatttttagtgattgattgacattggga |
14063 |
T |
|
| Q |
201 |
aaatatacttgctaattgattagcaataatcatatcaatttgttcttcactcaatactttttcctttgct |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||| |
|
|
| T |
14064 |
aaatatacttgctaattgattagcaataatcatatcaatttgttcttcacttaatacttcttcccttgct |
14133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 27360608 - 27360339
Alignment:
| Q |
1 |
aagcataattctcttaagattcttggcttataatttaataactccttgtttagtgagtaaaatggtacttcaaagcttgttagtaattgcatgtctttct |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||| |||||||||| |||||||||||||| |
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|
| T |
27360608 |
aagcataattcttttaagattcttggcttatagtttaataactccttgtttagtgagtagaatggtacttgaaaacttgttagtagttgcatgtctttct |
27360509 |
T |
|
| Q |
101 |
catggattactttgccacttgttttccttgagattaacatattatttgttttgctaagtaccttaatatgagaatttttagtgattgattgacattggga |
200 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27360508 |
catggattattttgccacttgttttgcttgagattaacatattctttgttttactaagtaccttaatatgagaatttttagtgattgattgacattggga |
27360409 |
T |
|
| Q |
201 |
aaatatacttgctaattgattagcaataatcatatcaatttgttcttcactcaatactttttcctttgct |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||| |
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|
| T |
27360408 |
aaatatacttgctaattgattagcaataatcatatcaatttgttcttcacttaatacttcttcccttgct |
27360339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 24963139 - 24962870
Alignment:
| Q |
1 |
aagcataattctcttaagattcttggcttataatttaataactccttgtttagtgagtaaaatggtacttcaaagcttgttagtaattgcatgtctttct |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
24963139 |
aagcacaattctcttaagattcttggcttatagtttaataactccttgtttagtgagtagaatggtacttcaaaacttgttagtagttgcatgtctttct |
24963040 |
T |
|
| Q |
101 |
catggattactttgccacttgttttccttgagattaacatattatttgttttgctaagtaccttaatatgagaatttttagtgattgattgacattggga |
200 |
Q |
| |
|
|||| |||| ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
24963039 |
catgaattattttgccacttgttttgcttgaaattaacatattctttgttttgctaagtaccttaatatgagaatttttagtgattgattgacattggaa |
24962940 |
T |
|
| Q |
201 |
aaatatacttgctaattgattagcaataatcatatcaatttgttcttcactcaatactttttcctttgct |
270 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||| ||||| |
|
|
| T |
24962939 |
aaatatacttgctaattgattagaaataatcatatcaatttgttcttcacttaatacttcttcccttgct |
24962870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 20412894 - 20412770
Alignment:
| Q |
1 |
aagcataattctcttaagattcttggcttataatttaataactccttgtttagtgagtaaaatggtacttcaaagcttgttagtaattgcatgtctttct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20412894 |
aagcataattctcttaagattcttggcttatagtttattaactccttgtttagtgagtaaaatggtacttcaaagcttgttagtaattgcatgtctttct |
20412795 |
T |
|
| Q |
101 |
catggattactttgccacttgtttt |
125 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
20412794 |
catggattactttgccacttgtttt |
20412770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 122 - 270
Target Start/End: Complemental strand, 20408757 - 20408609
Alignment:
| Q |
122 |
ttttccttgagattaacatattatttgttttgctaagtaccttaatatgagaatttttagtgattgattgacattgggaaaatatacttgctaattgatt |
221 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
20408757 |
ttttgcttgagattaacatattctttgttttactaagtactttaatatgagaatttttagtgattgattggcattgggaaaatatacttgctaattgatt |
20408658 |
T |
|
| Q |
222 |
agcaataatcatatcaatttgttcttcactcaatactttttcctttgct |
270 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||| |||| ||||| |
|
|
| T |
20408657 |
agcaataatcatatcaattttttcttcacttaatacttcttcccttgct |
20408609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 23927929 - 23928198
Alignment:
| Q |
1 |
aagcataattctcttaagattcttggcttataatttaataactccttgtttagtgagtaaaatggtacttcaaagcttgttagtaattgcatgtctttct |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
23927929 |
aagcacaattctcttaagattcttggcttatagtttaataactccttgtttagtgagtagaatggtacttcaaaacttgttagtagttgcatgtctttct |
23928028 |
T |
|
| Q |
101 |
catggattactttgccacttgttttccttgagattaacatattatttgttttgctaagtaccttaatatgagaatttttagtgattgattgacattggga |
200 |
Q |
| |
|
|||| |||| ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
23928029 |
catgaattattttgccacttgttttgcttgaaattaacatattctttgttttgctaagtaccttaatatgagaatttttagtgattgattgacattggaa |
23928128 |
T |
|
| Q |
201 |
aaatatacttgctaattgattagcaataatcatatcaatttgttcttcactcaatactttttcctttgct |
270 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||| ||||| |
|
|
| T |
23928129 |
aaatatacttgctaattgattagaaataatcatatcaatttgttcttcacttaatacttcttcccttgct |
23928198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 23934652 - 23934383
Alignment:
| Q |
1 |
aagcataattctcttaagattcttggcttataatttaataactccttgtttagtgagtaaaatggtacttcaaagcttgttagtaattgcatgtctttct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||| |||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
23934652 |
aagcataattctcttaagattcttggcttatagtttaataatttcttgtttagtgagtagaatggtacttcaaaacttgttagtagttgcatgtctttct |
23934553 |
T |
|
| Q |
101 |
catggattactttgccacttgttttccttgagattaacatattatttgttttgctaagtaccttaatatgagaatttttagtgattgattgacattggga |
200 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
23934552 |
catggattattttgccacttgtttttcttgagattaacatattctttgttttgcaaagtaccttaatatgagaatttttagtgattgattgacattggaa |
23934453 |
T |
|
| Q |
201 |
aaatatacttgctaattgattagcaataatcatatcaatttgttcttcactcaatactttttcctttgct |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||| ||||| |
|
|
| T |
23934452 |
aaatatacttgctaattgattagcaataatcatatcaatttgttcttcacttagtacttcttcccttgct |
23934383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 32263288 - 32263030
Alignment:
| Q |
1 |
aagcataattctcttaagattcttggcttataatttaataactccttgtttagtgagtaaaatggtacttcaaagcttgttagtaattgcatgtctttct |
100 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||||||| |||||||||| |||||||||||| | |
|
|
| T |
32263288 |
aagcataattcttttaagattcttggtttatagtttaataattccttgtttagtgagtagaatggtacttcaaaacttgttagtagttgcatgtcttttt |
32263189 |
T |
|
| Q |
101 |
catggattactttgccacttgttttccttgagattaacatattatttgttttgctaagtaccttaatatgagaatttttagtgattgattgacattggga |
200 |
Q |
| |
|
| ||||||| ||||||||||||||| |||||||||| |||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
32263188 |
cttggattattttgccacttgttttgcttgagattagcatattctttgttttgctaagtaccttgatatgagagtttttagtgattgattgacattggga |
32263089 |
T |
|
| Q |
201 |
aaatatacttgctaattgattagcaataatcatatcaatttgttcttcactcaatactt |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
32263088 |
aaatatacttgctaattgattagcaataatcatatcaatttgttcttcacttaatactt |
32263030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 4 - 251
Target Start/End: Original strand, 34413840 - 34414087
Alignment:
| Q |
4 |
cataattctcttaagattcttggcttataatttaataactccttgtttagtgagtaaaatggtacttcaaagcttgttagtaattgcatgtctttctcat |
103 |
Q |
| |
|
|||||||| || || || |||||||| |||||||||| |||||||| | | |||||||||| |||||||| |||||||| | ||||||||| ||||||| |
|
|
| T |
34413840 |
cataattcactcaaaatgcttggcttgtaatttaatatctccttgtccaattagtaaaatgggacttcaaaacttgttagaagttgcatgtccttctcat |
34413939 |
T |
|
| Q |
104 |
ggattactttgccacttgttttccttgagattaacatattatttgttttgctaagtaccttaatatgagaatttttagtgattgattgacattgggaaaa |
203 |
Q |
| |
|
|||||| ||||||||||||||| ||| || | |||||||| ||||||||||||||||||||||||| ||||| ||| | ||||||||| ||| ||| | |
|
|
| T |
34413940 |
ggattagtttgccacttgttttgcttaaggtcaacatattttttgttttgctaagtaccttaatatatgaattcttattaattgattgatattatgaata |
34414039 |
T |
|
| Q |
204 |
tatacttgctaattgattagcaataatcatatcaatttgttcttcact |
251 |
Q |
| |
|
||| |||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
34414040 |
tatgcttgctaattgattagcaataatcatattgatttgttcttcact |
34414087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 4 - 250
Target Start/End: Complemental strand, 29082110 - 29081865
Alignment:
| Q |
4 |
cataattctcttaagattcttggcttataatttaataactccttgtttagtgagtaaaatggtacttcaaagcttgttagtaattgcatgtctttctcat |
103 |
Q |
| |
|
|||||||| ||||| || |||||||| ||||||||||||||||| | | |||||||||||| |||||||| |||||||| | ||||||||| ||| || |
|
|
| T |
29082110 |
cataattcacttaaaatgcttggcttgtaatttaataactccttatccaatgagtaaaatgggacttcaaaacttgttagaagttgcatgtccttc--at |
29082013 |
T |
|
| Q |
104 |
ggattactttgccacttgttttccttgagattaacatattattt-gttttgctaagtaccttaatatgagaatttttagtgattgattgacattgggaaa |
202 |
Q |
| |
|
||||| || ||||||||| || ||| ||| |||||||| ||| |||||||||||||||||||||| |||||| || | ||||||||||||| |||| |
|
|
| T |
29082012 |
agattagttcgccacttgtcttgcttacgatcaacatatttttttgttttgctaagtaccttaatataagaattcatattaattgattgacattaggaat |
29081913 |
T |
|
| Q |
203 |
atatacttgctaattgattagcaataatcatatcaatttgttcttcac |
250 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
29081912 |
atatgcttgctaattgattagcaataatcatattgatttgttcttcac |
29081865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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