View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5575-Insertion-3 (Length: 395)
Name: NF5575-Insertion-3
Description: NF5575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5575-Insertion-3 |
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Alignment Details
Target: chr7 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 8 - 320
Target Start/End: Complemental strand, 42466704 - 42466390
Alignment:
| Q |
8 |
cttctttcccttgtttt-aaatttaggatggacagggtgagcattatgagaaggtaattaggcaaattagttaataaggagggagtgctatgagttaatt |
106 |
Q |
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| T |
42466704 |
cttctttcccttgtttttaaatttaggatgggcagggtgagcattatgagaaggtaattagacaaattagttaataaggagggagtgtgatgagttaatt |
42466605 |
T |
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| Q |
107 |
taatttaagac------tttaagcatatctttagatttctgaatcaacatataagtaaaagacgattagataaaagggaaattgtgannnnnnnngttga |
200 |
Q |
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| T |
42466604 |
taatttaagacctgcctgttaagcatatctttaga-ttctgaatcaacatataagtaaaatacgattagataaaagggaaa-tgtgattttttt--ttta |
42466509 |
T |
|
| Q |
201 |
agaaattaaaatggaatatattaccccattaaaaagtctttttcaacataaagtgtgcaaaggaagaaacaaaagagtgcaaacactgtccaaccaatat |
300 |
Q |
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| T |
42466508 |
agaaggtaaaatgaaatatattactccatcaaaaagtctttcgtagcataaggtgtgcaaaggaagaaacaaaagagtccaaacagtgtccaaccaat-t |
42466410 |
T |
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| Q |
301 |
ttacaagctagaagctatac |
320 |
Q |
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| T |
42466409 |
ttacaagctagaagctatac |
42466390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 215 - 320
Target Start/End: Original strand, 12236527 - 12236632
Alignment:
| Q |
215 |
aatatattaccccattaaaaagtctttttcaacataaagtgtgcaaaggaagaaacaaaagagtgcaaacactgtccaaccaatatttacaagctagaag |
314 |
Q |
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| T |
12236527 |
aatatattaccacatcaaaaagtccttcttaacgtaagatgtgtaaaggaaaaaataaaagagtgcaaatagtatccaaacaatatttacaagctagaag |
12236626 |
T |
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| Q |
315 |
ctatac |
320 |
Q |
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|||||| |
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| T |
12236627 |
ctatac |
12236632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 344 - 382
Target Start/End: Original strand, 2167487 - 2167525
Alignment:
| Q |
344 |
taacaattagtctatatccaacatggtaaacggactaag |
382 |
Q |
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| T |
2167487 |
taacaattagtccatgtccaacatggtaaacggactaag |
2167525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 260 - 317
Target Start/End: Original strand, 17292662 - 17292719
Alignment:
| Q |
260 |
aaggaagaaacaaaagagtgcaaacactgtccaaccaatatttacaagctagaagcta |
317 |
Q |
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| T |
17292662 |
aaggaagaaacaaacgagtccaaatagtgtccaaacaatatttataagctagaagcta |
17292719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 310
Target Start/End: Original strand, 8074491 - 8074584
Alignment:
| Q |
217 |
tatattaccccattaaaaagtctttttcaacataaagtgtgcaaaggaagaaacaaaagagtgcaaacactgtccaaccaatatttacaagcta |
310 |
Q |
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||||||||| ||| ||||||||||| ||||| || |||||| |||||| ||||| |||||| || ||| || ||| |||||| ||||||||| |
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| T |
8074491 |
tatattaccacatcaaaaagtctttcccaacacaaggtgtgcgaaggaaaaaacagaagagtccacacagagttcaaacaatatatacaagcta |
8074584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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