View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5575_high_3 (Length: 586)
Name: NF5575_high_3
Description: NF5575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5575_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 9 - 568
Target Start/End: Complemental strand, 51761629 - 51761070
Alignment:
| Q |
9 |
gtgagatgaacaagatcatgaagaaagcaaggagtgtgagggagttatgtgtttgcatcattttttgtttatatcacaaagaaaagaagaacaaaaggat |
108 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51761629 |
gtgacatgaacaagatcatgaagaaagcatggagtgtgagggagttatgtgtttgcatcattttttgtttatatcacaaagaaaagaagaacaaaaggat |
51761530 |
T |
|
| Q |
109 |
taagaaattagaggaannnnnnnnnnnnnnnnnnntaagagtgagtgtgattgagtagagtaaggggagatggcttttatttatagggaagggaaatgtt |
208 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51761529 |
taagaaattagaggaatgttgtgttgtgtt-----taagagtgagtgtgattcagtagagtaaggggagatggcttttatttatagggaagggaaatgtt |
51761435 |
T |
|
| Q |
209 |
ggtgcctttggaatggaagtgagtcaagatctctaagtcatatttaatattgatatttttgccacctcccacgatctcacaattatattat-----tgat |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
51761434 |
ggtgcctttggaatggaagtgagtcaagatctctaagtcatatttaatattgatatttttgccacctcccacgatctcacaattatattatattattgat |
51761335 |
T |
|
| Q |
304 |
taacaacatgtaataattaattaacacactagctacaagttagtatcataataaacaagaaaagaaaactatgtactgtctcctaaagtgtgatagtctt |
403 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51761334 |
taacaacatgtaataactaattaacacactagctacaagttggtatcataataaacaagaaaagaaaactatgtactgtctcctaaagtgtgatagtctt |
51761235 |
T |
|
| Q |
404 |
cttattttatatcgattatgggattttcctttacagttgttaagctatatatgtcggtcacattttaacgtaagttataagactgtgaaaagattgttat |
503 |
Q |
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|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51761234 |
cttattttatatcgataatgggattttcctttacagttattaagctatatatgtcggtcacattttaacgtaagttataagactgtgaaaagattgttat |
51761135 |
T |
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| Q |
504 |
tttctcattatgatannnnnnnnnnnnnnaatatgactcgagtgggtgaagtttggtgggaaaga |
568 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
51761134 |
tttctcattatgatatttttaatttttttaatatgactcgagtgggtgaagtttggtgggaaaga |
51761070 |
T |
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