View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5575_high_5 (Length: 433)
Name: NF5575_high_5
Description: NF5575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5575_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 421
Target Start/End: Complemental strand, 10265770 - 10265363
Alignment:
| Q |
18 |
atttttatgaattactatcacatacaccgaatatgacactgacacgtcgacccgataaaaatttgaaaaaattgaagtaattgaatttaatcataaatgt |
117 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
10265770 |
atttttatgaaatactatcacatacaccgaatatgacactgacacgtcgacctgataaaaatttgaaaaaactgaagtaattgaatttaatcataaatgt |
10265671 |
T |
|
| Q |
118 |
cagtgtcgtattgttgtcggacaccaatacatatgtgacaacagacatttcttcaatgtgtcggttcggttatacatagttttctcctagttagttagaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
10265670 |
cagtgtcgtattgttgtcggacaccaatacatatgtgacaatagacatttcttcaatgtgtcagttcggttctacatagttttctcctagttagttagaa |
10265571 |
T |
|
| Q |
218 |
tggacaaaaactaacacaattccatta----tgtagagagtttcctgtccaaaatggcaaggccttaagcatcgtctacggcagcaaattatcacaaaca |
313 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| || ||||| |||||||||||||||||||| |
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| T |
10265570 |
tggacaaaaagtaacacaattccattatgtatgtagagagtttcctatccaaaatggcaaggccttaagcttcatctacagcagcaaattatcacaaaca |
10265471 |
T |
|
| Q |
314 |
aaagggggtgtgacagcaggaacagccacaacaaatgtgttcagaaatccaggattcaagcatgccatgaatgcatttaaatccgatagtgtcagtccag |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10265470 |
aaagggggtgtgacagcaggaacagccacaacaaatgtgttcagaaatccaggattcaagcatgccatgaatgcatttaaatccgatagtgtcagtccag |
10265371 |
T |
|
| Q |
414 |
atgaagta |
421 |
Q |
| |
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|||||||| |
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|
| T |
10265370 |
atgaagta |
10265363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 33 - 421
Target Start/End: Complemental strand, 10273445 - 10273060
Alignment:
| Q |
33 |
tatcacatacaccgaatatgacactgacacgtcgacc-cgataaaaatttgaaaaaattgaagtaattgaatttaatcat--aaatgtcagtgtcgtatt |
129 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||| |||||| ||||| ||||| |||||||||| |||| | | | || |||||||||||| |
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| T |
10273445 |
tatcacatacatcgaatatgacactgacacgtcaacctcgataataatttaaaaaagttgaagtaat-gaatatcgaggttgacatatcagtgtcgtatc |
10273347 |
T |
|
| Q |
130 |
gttgtcggacaccaatacatatgtgacaacagacatttcttcaatgtgtcggttcggttatacatagttttctcctagttagttagaatggacaaaaact |
229 |
Q |
| |
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||||||||||||||||||||||| |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
10273346 |
gttgtcggacaccaatacatatgggacatcagacatttcttcagtgtgtcggttc-----tacatagttttctcctagttagttagaatggacaaaaact |
10273252 |
T |
|
| Q |
230 |
aacacaattccattatgtagagagtttcctgtccaaaatggcaaggccttaagcatcgtctacggcagcaaattatcacaaacaaaagggggtgtgacag |
329 |
Q |
| |
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||||||||| |||||||||||||||||||| ||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
10273251 |
aacacaattacattatgtagagagtttcctatccaaaatggcaaggccttaagcttcatctacagcagcaaattatcacaaacaaaagggggtgtgacag |
10273152 |
T |
|
| Q |
330 |
caggaacagccacaacaaatgtgttcagaaatccaggattcaagcatgccatgaatgcatttaaatccgatagtgtcagtccagatgaagta |
421 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||| || |||| ||||| | ||||| |||||| |||||||||||||||||||||| |
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|
| T |
10273151 |
caggaacagccacagcaaatgtgttcagtcatccaggatacaggcataccatgcaggcattaaaatcccctagtgtcagtccagatgaagta |
10273060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 209 - 384
Target Start/End: Complemental strand, 10243690 - 10243515
Alignment:
| Q |
209 |
tagttagaatggacaaaaactaacacaattccattatgtagagagtttcctgtccaaaatggcaaggccttaagcatcgtctacggcagcaaattatcac |
308 |
Q |
| |
|
|||||||||| |||||| |||||| |||||||||||| |||||||||||| ||||||||||||||||||||||| || ||||| |||||||| |||||| |
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| T |
10243690 |
tagttagaatttacaaaagctaacaaaattccattatgcagagagtttcctatccaaaatggcaaggccttaagcttcatctacagcagcaaactatcac |
10243591 |
T |
|
| Q |
309 |
aaacaaaagggggtgtgacagcaggaacagccacaacaaatgtgttcagaaatccaggattcaagcatgccatgaa |
384 |
Q |
| |
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|| | |||||||||||||||| || |||||||||| | ||||| |||||||||||||||| ||||||||| ||||| |
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|
| T |
10243590 |
aagctaaagggggtgtgacagtagcaacagccacagccaatgtattcagaaatccaggatacaagcatgcaatgaa |
10243515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 209 - 368
Target Start/End: Complemental strand, 10284514 - 10284355
Alignment:
| Q |
209 |
tagttagaatggacaaaaactaacacaattccattatgtagagagtttcctgtccaaaatggcaaggccttaagcatcgtctacggcagcaaattatcac |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||| ||||| | | ||||| | ||||| | ||||| |
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| T |
10284514 |
tagttagaatggacaaaaactaacacaattccattgtgtagagagtttcctatccaaaatggaaagggcttaaactttatctacagtagcaagtcatcac |
10284415 |
T |
|
| Q |
309 |
aaacaaaagggggtgtgacagcaggaacagccacaacaaatgtgttcagaaatccaggat |
368 |
Q |
| |
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||||| || ||||| ||| || |||||||||||||||| | |||| ||||||||||| |
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|
| T |
10284414 |
aaacagaaaatggtgtaacattagcaacagccacaacaaatctattcacaaatccaggat |
10284355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 144
Target Start/End: Complemental strand, 1555932 - 1555860
Alignment:
| Q |
69 |
ccgataaaaatttgaaaaaattgaagtaattgaatttaatcataaatgtcagtgtcgtattgttgtcggacaccaa |
144 |
Q |
| |
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||||||| ||||||||||| ||||||||||||| |||| | | ||||| || |||||||| ||||||||||||| |
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| T |
1555932 |
ccgataataatttgaaaaa---gaagtaattgaatataattacatatgtctgtctcgtattggtgtcggacaccaa |
1555860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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