View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5575_low_10 (Length: 251)
Name: NF5575_low_10
Description: NF5575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5575_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 19602986 - 19603216
Alignment:
| Q |
1 |
gtgacaaatcactgagctccaaactagaaagtttgagagaagataaagttccaggtacctcttccgaaacaaccttagacaatttcttcactgaatttcc |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19602986 |
gtgacaaatcactaagctccaaactagaaagtttgagagaagataaagttccaggtacctcttccgaaacaaccttagacaatttcttcactgaatttcc |
19603085 |
T |
|
| Q |
101 |
taatcttccaaaagcctttgcaacaaacatagataacaattagttgaagattatattaatcattctacaaatcaattgaaaattgcaacacaaaaaacct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
19603086 |
taatcttccaaaagcctttgcaacaaacatagataacaattagttgaagattatattaatcattctac-----------aaattgcaacacaaaaaacct |
19603174 |
T |
|
| Q |
201 |
acaattaacgttggaattgaaattaaaaccacagagaataat |
242 |
Q |
| |
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|||||||| |||||||| ||||||||| |||| ||||||||| |
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| T |
19603175 |
acaattaaggttggaatggaaattaaagccacggagaataat |
19603216 |
T |
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