View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5575_low_11 (Length: 248)
Name: NF5575_low_11
Description: NF5575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5575_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 19602767 - 19602537
Alignment:
| Q |
1 |
ttgttaagatgttagtctatttctgattatgttgttgtaataatattttaggcatataattcctggtgttggcattggaaataaggatagaagcactatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19602767 |
ttgttaagatgttagtctatttctgattatgttgttgtaaaaatattttaggcatataattcctggtgttggcattggaaataaggatagaagcactatg |
19602668 |
T |
|
| Q |
101 |
agatcgagatcctttcgcaagaagaaaccatcgtcctaacattgcaaacgatgcctaggtgtgtactttgtgagcatttttgtttaggaaattatgcttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19602667 |
agatcgagatcctttcgcaagaagaaaccatcgtcctaacattgcaaacgatgcctaggtgtgtactttgtgagcatttttgtttaggaaattatgcttc |
19602568 |
T |
|
| Q |
201 |
tttggtgaattaaaattgcttaatgggtgta |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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|
| T |
19602567 |
tttggtgaattaaaattgcttaatgggtgta |
19602537 |
T |
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