View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5575_low_13 (Length: 213)
Name: NF5575_low_13
Description: NF5575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5575_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 27756196 - 27756010
Alignment:
| Q |
19 |
aacgacaccaccgtgttccctctccgcagctgcgtgtacgttatccccactaaccccatcacgtggtgcattggcacaaaacacacaaacacgttcttcc |
118 |
Q |
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| T |
27756196 |
aacgacaccaccgtgttccctctccgcagctgcgtgtacgttatccccactaaccccatcacgtggtgcattggcacaaaacacacaaacacgttcttcc |
27756097 |
T |
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| Q |
119 |
cctcgccgttctggtcctgatccaccgctcccgccaccgctgtagctattaagttctggtgagtcagcatcactcctttgcttctcc |
205 |
Q |
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| T |
27756096 |
cctcgccgttctggtcctgatccaccgctcccgccaccgctgtagctattaagttctggtgagtcagcatcactcccttgcttctcc |
27756010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 127
Target Start/End: Complemental strand, 27766865 - 27766760
Alignment:
| Q |
22 |
gacaccaccgtgttccctctccgcagctgcgtgtacgttatccccactaaccccatcacgtggtgcattggcacaaaacacacaaacacgttcttcccct |
121 |
Q |
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|||||||||||||||||||||| |||||||||||| |||| || | || |||||||| || ||||| ||||| ||||| | ||||| |||||||||| |
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| T |
27766865 |
gacaccaccgtgttccctctcctcagctgcgtgtataatatcaccgccaatcccatcacatgatgcatcggcaccaaacaaaggaacacattcttcccct |
27766766 |
T |
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| Q |
122 |
cgccgt |
127 |
Q |
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| T |
27766765 |
cgccgt |
27766760 |
T |
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