View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5575_low_4 (Length: 574)
Name: NF5575_low_4
Description: NF5575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5575_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 441; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 559
Target Start/End: Complemental strand, 18867757 - 18867205
Alignment:
| Q |
1 |
tacataaatataatattttatcaaaaggtttataaatgaacgaataaaagaagaaatgactcctcnnnnnnnnnnnnngatgaaatgatacgagtcatac |
100 |
Q |
| |
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| T |
18867757 |
tacataaatataatattttatcaaaaggtatataaatgaacgaataaaagaagaaatgactcctcaaaaaaataaaaagatgaaatgatacga------- |
18867665 |
T |
|
| Q |
101 |
gactcataggaatatactatgcaggaggaattgttcgagtctattttccaacatgtttccttcacttggcttcacgttcttcaagcttatatattccatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18867664 |
--ctcataggaatatactatgcaggaggaattgttcgagtctattttccaacatgtttccttcacttggcttcacgttcttcaagcttatatattccatc |
18867567 |
T |
|
| Q |
201 |
aatgaaatcttctgtcatccacagaaaagatccaaaagcaagaccttcccatagtagtctctttatactagaaaatgaagcttcaataaacctatcatct |
300 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18867566 |
aatgaaatcttctgccatccacagaaaagatccaaaagcaagaccttcccatagtagtctctttatactagaaaatgaagcttcaataaacctatcatct |
18867467 |
T |
|
| Q |
301 |
tcttcatcatcatca---aactcattcaaaccacattccttattatgctcaaaaagtgcttgagtatgactctctatcaattgcaaagcttctttatatc |
397 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
18867466 |
tcttcatcatcatcatcaaactcattcaaaccacattccttattatgctcaaaaagggcttgagtatgactctctatcagttgcaaagcttctttatatc |
18867367 |
T |
|
| Q |
398 |
tcaatttacaaccatccaacactaatctaggtcgcttaaagccctttacataatctttcaaagttccattttcaatttcttgcttaccaaggaacacatt |
497 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
18867366 |
tcaatttacaaccatccaacactaatctaggtcgcttaaagccctttacataatctttcaaagttccattttcaatttcttgcttaccaaggaacacgtt |
18867267 |
T |
|
| Q |
498 |
tttcgatccatgtccagtatgatgatcatggtcagacaaagattggcgtttttcttgttcat |
559 |
Q |
| |
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|||||||||||||||||||| | ||||||||||||||||| |||||||||||||| |||||| |
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| T |
18867266 |
tttcgatccatgtccagtattaagatcatggtcagacaaaaattggcgtttttctagttcat |
18867205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 131 - 299
Target Start/End: Complemental strand, 18888400 - 18888238
Alignment:
| Q |
131 |
ttgttcgagtctattttccaacatgtttccttcacttggcttcacgttcttcaagcttatatattccatcaatgaaatcttctgtcatccacagaaaaga |
230 |
Q |
| |
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||||| || |||| ||| ||||||||| ||||||||| |||||| | ||||||| ||||||| | | ||||||||||| | |||||| | |||| |
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| T |
18888400 |
ttgtttgaatctactttgcaacatgtt-ccttcactttgcttcaagatcttcaaacttatatgt-----cgatgaaatcttcggccatccatgggaaagt |
18888307 |
T |
|
| Q |
231 |
tccaaaagcaagaccttcccatagtagtctctttatactagaaaatgaagcttcaataaacctatcatc |
299 |
Q |
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| T |
18888306 |
tccaaaagcaagaccttcttagagtagtctctttataatagtaaatgaagcttcaataaacttatcatc |
18888238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 434 - 484
Target Start/End: Complemental strand, 18881383 - 18881333
Alignment:
| Q |
434 |
taaagccctttacataatctttcaaagttccattttcaatttcttgcttac |
484 |
Q |
| |
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|||||||||||| ||||||||||||| |||| ||||| |||||||||||| |
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| T |
18881383 |
taaagccctttatataatctttcaaatctccaatttcattttcttgcttac |
18881333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 434 - 484
Target Start/End: Complemental strand, 18888029 - 18887979
Alignment:
| Q |
434 |
taaagccctttacataatctttcaaagttccattttcaatttcttgcttac |
484 |
Q |
| |
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|||||||||||| ||||||||||||| |||| ||||| |||||||||||| |
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| T |
18888029 |
taaagccctttatataatctttcaaatctccaatttcattttcttgcttac |
18887979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 199 - 280
Target Start/End: Complemental strand, 3545011 - 3544930
Alignment:
| Q |
199 |
tcaatgaaatcttctgtcatccacagaaaagatccaaaagcaagaccttcccatagtagtctctttatactagaaaatgaag |
280 |
Q |
| |
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|||||| |||||||||| ||||||||||||||||||||||| | ||||| | | ||||||||| | |||||||||||||| |
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| T |
3545011 |
tcaatgtaatcttctgtttcccacagaaaagatccaaaagcaacagcttccaagactagtctcttaagactagaaaatgaag |
3544930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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