View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5575_low_6 (Length: 404)

Name: NF5575_low_6
Description: NF5575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5575_low_6
NF5575_low_6
[»] chr8 (1 HSPs)
chr8 (88-334)||(31211066-31211319)
[»] chr7 (5 HSPs)
chr7 (160-334)||(20075146-20075315)
chr7 (160-285)||(23095323-23095447)
chr7 (329-371)||(20075961-20076003)
chr7 (88-129)||(20074769-20074810)
chr7 (119-159)||(20074843-20074883)
[»] chr2 (4 HSPs)
chr2 (160-334)||(7393660-7393830)
chr2 (160-334)||(19583278-19583448)
chr2 (329-393)||(19584062-19584126)
chr2 (329-393)||(7392983-7393047)
[»] chr4 (4 HSPs)
chr4 (160-334)||(16033529-16033699)
chr4 (160-279)||(11655455-11655570)
chr4 (329-393)||(16034313-16034377)
chr4 (329-393)||(11655801-11655865)


Alignment Details
Target: chr8 (Bit Score: 133; Significance: 5e-69; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 88 - 334
Target Start/End: Original strand, 31211066 - 31211319
Alignment:
Q  88 gggaaagcagattgagcaaatatattcattgatattataattattgtagtatatgttagtgaattgaactaa--------aagttaatgaaaatatactt 179  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||| |||||||        ||||||||||||||||||||    
T  31211066 gggaaagcagattgagcaaatatattcattgatattataattgttttagtgtatgttagtgaatagaactaatatgttttaagttaatgaaaatatactt 31211165  T
Q  180 tttattagcatttataaactcnnnnnnnntaattaaatatgataactttaacaatagatattcattgtagacatagtcatctatttaaagatgagttaac 279  Q
    || ||||||||||||||||||        |||| ||| |||||||||||||| |||||||||||||||||||||| |||| | |||||||||||||||||    
T  31211166 ttcattagcatttataaactcaaaaaaa-taatcaaacatgataactttaacgatagatattcattgtagacataatcatttgtttaaagatgagttaac 31211264  T
Q  280 actgtcaaacgcaaaaacaaacaaaaagaatacaatgctaatatgatagttcata 334  Q
    ||||||||||||||||||||||| ||||||| ||||||  | |||||||||||||    
T  31211265 actgtcaaacgcaaaaacaaacataaagaatgcaatgcctacatgatagttcata 31211319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 160 - 334
Target Start/End: Original strand, 20075146 - 20075315
Alignment:
Q  160 aagttaatgaaaatatactttttattagcatttataaactcnnnnnnnntaattaaatatgataactttaacaatagatattcattgtagacatagtcat 259  Q
    |||||||||||||||||||||| ||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20075146 aagttaatgaaaatatacttttcattagcatttataaactcaaaaaaa-taattaaatatgataactttaacaatagatattcattgtagacatagtcat 20075244  T
Q  260 ctatttaaagatgagttaacactgtcaaacgcaaaaacaaacaaaaagaatacaatgctaatatgatagttcata 334  Q
    ||||||||||||||||||||||  ||||| ||||||||||||  ||||||| ||||||| | |||||||||||||    
T  20075245 ctatttaaagatgagttaacac--tcaaaagcaaaaacaaac--aaagaatgcaatgcttacatgatagttcata 20075315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 160 - 285
Target Start/End: Original strand, 23095323 - 23095447
Alignment:
Q  160 aagttaatgaaaatatactttttattagcattt-ataaactcnnnnnnnntaattaaatatgataactttaacaatagatattcattgtagacatagtca 258  Q
    ||||||| |||||||||||||| |||||||||| ||||||||        |||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  23095323 aagttaacgaaaatatacttttcattagcattttataaactcaaaaaa--taatcaaacatgataactttaacaatagatattcattgtagacatagtca 23095420  T
Q  259 tctatttaaagatgagttaacactgtc 285  Q
    ||| ||||||||| |||||||| ||||    
T  23095421 tctgtttaaagataagttaacattgtc 23095447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 329 - 371
Target Start/End: Original strand, 20075961 - 20076003
Alignment:
Q  329 ttcatattataggcgttgttaagttcattcacaccatgagtta 371  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  20075961 ttcatattataagcgttgttaagttcattcacaccatgagtta 20076003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 20074769 - 20074810
Alignment:
Q  88 gggaaagcagattgagcaaatatattcattgatattataatt 129  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  20074769 gggaaagcagattgatcaaatatattcattgatattataatt 20074810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 20074843 - 20074883
Alignment:
Q  119 atattataattattgtagtatatgttagtgaattgaactaa 159  Q
    ||||||||||| ||||||| ||||||||||||| |||||||    
T  20074843 atattataattgttgtagtgtatgttagtgaatagaactaa 20074883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 4e-48; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 160 - 334
Target Start/End: Complemental strand, 7393830 - 7393660
Alignment:
Q  160 aagttaatgaaaatatactttttattagcatttataaactcnnnnnnnntaattaaatatgataactttaacaatagatattcattgtagacatagtcat 259  Q
    ||||||| |||||||||||||| ||||||||||||||||||        |||| ||| ||||||||||||||||||||||||||||||||||| ||||||    
T  7393830 aagttaacgaaaatatacttttcattagcatttataaactcaaaa----taatcaaacatgataactttaacaatagatattcattgtagacaaagtcat 7393735  T
Q  260 ctatttaaagatgagttaacactgtcaaacgcaaaaacaaacaaaaagaatacaatgctaatatgatagttcata 334  Q
    || ||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||   |||||||||||||    
T  7393734 ctgtttaaagataagttaacattgtcaaacgcaaaaacaaacaaaaagaatgcaatgcttgcatgatagttcata 7393660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 160 - 334
Target Start/End: Original strand, 19583278 - 19583448
Alignment:
Q  160 aagttaatgaaaatatactttttattagcatttataaactcnnnnnnnntaattaaatatgataactttaacaatagatattcattgtagacatagtcat 259  Q
    ||||||| |||||||||||||| ||||||||||||||||||        |||| ||| ||||||||||||||||||||||||||||||||||| ||| ||    
T  19583278 aagttaacgaaaatatacttttcattagcatttataaactcaaaa----taatcaaacatgataactttaacaatagatattcattgtagacaaagttat 19583373  T
Q  260 ctatttaaagatgagttaacactgtcaaacgcaaaaacaaacaaaaagaatacaatgctaatatgatagttcata 334  Q
    || ||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||   |||||||||||||    
T  19583374 ctgtttaaagataagttaacattgtcaaacgcaaaaacaaacaaaaagaatgcaatgcttgcatgatagttcata 19583448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 329 - 393
Target Start/End: Original strand, 19584062 - 19584126
Alignment:
Q  329 ttcatattataggcgttgttaagttcattcacaccatgagttaaacataatttgtcattcttctt 393  Q
    |||| |||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  19584062 ttcaaattataagtgttgttaagttcattcacgccatgagttaaacataatttgtcattcttctt 19584126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 329 - 393
Target Start/End: Complemental strand, 7393047 - 7392983
Alignment:
Q  329 ttcatattataggcgttgttaagttcattcacaccatgagttaaacataatttgtcattcttctt 393  Q
    |||| |||||| | |||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  7393047 ttcaaattataagtgttgttaagttcattcacgccatgagttaaacataatttttcattcttctt 7392983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 9e-46; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 160 - 334
Target Start/End: Original strand, 16033529 - 16033699
Alignment:
Q  160 aagttaatgaaaatatactttttattagcatttataaactcnnnnnnnntaattaaatatgataactttaacaatagatattcattgtagacatagtcat 259  Q
    ||||||| |||||||||||||| ||||||||||||||||||        |||| ||| |||||||||||||||||||| |||||||||||||| ||||||    
T  16033529 aagttaacgaaaatatacttttcattagcatttataaactcaaaa----taatcaaacatgataactttaacaatagaaattcattgtagacaaagtcat 16033624  T
Q  260 ctatttaaagatgagttaacactgtcaaacgcaaaaacaaacaaaaagaatacaatgctaatatgatagttcata 334  Q
    || ||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||   |||||||||||||    
T  16033625 ctgtttaaagataagttaacattgtcaaacgcaaaaacaaacaaaaagaatgcaatgcttgcatgatagttcata 16033699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 160 - 279
Target Start/End: Original strand, 11655455 - 11655570
Alignment:
Q  160 aagttaatgaaaatatactttttattagcatttataaactcnnnnnnnntaattaaatatgataactttaacaatagatattcattgtagacatagtcat 259  Q
    ||||||| |||||||||||||| ||||||||||||||||||        |||| ||| ||||||||||||||||||||||||||||||||||| ||||||    
T  11655455 aagttaacgaaaatatacttttcattagcatttataaactcaaaa----taatcaaacatgataactttaacaatagatattcattgtagacaaagtcat 11655550  T
Q  260 ctatttaaagatgagttaac 279  Q
    || ||||||||| |||||||    
T  11655551 ctgtttaaagataagttaac 11655570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 329 - 393
Target Start/End: Original strand, 16034313 - 16034377
Alignment:
Q  329 ttcatattataggcgttgttaagttcattcacaccatgagttaaacataatttgtcattcttctt 393  Q
    |||| |||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  16034313 ttcaaattataagtgttgttaagttcattcacgccatgagttaaacataatttgtcattcttctt 16034377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 329 - 393
Target Start/End: Original strand, 11655801 - 11655865
Alignment:
Q  329 ttcatattataggcgttgttaagttcattcacaccatgagttaaacataatttgtcattcttctt 393  Q
    |||| |||||| | |||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  11655801 ttcaaattataagtgttgttaagttcattcacgccatgagttaaacataatttttcattcttctt 11655865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University