View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5575_low_9 (Length: 272)

Name: NF5575_low_9
Description: NF5575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5575_low_9
NF5575_low_9
[»] scaffold0140 (2 HSPs)
scaffold0140 (97-251)||(33326-33481)
scaffold0140 (10-60)||(33237-33287)


Alignment Details
Target: scaffold0140 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 97 - 251
Target Start/End: Original strand, 33326 - 33481
Alignment:
Q  97 gctctaaaatcatatatcatgttttggctaaaccaattagaatcctttgtcatttgcacttgtagactttgcttatagaaaatgattttatgt-caaaaa 195  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  33326 gctctaaaatcatatatcatgttttggctaaaccaattagactcctttgtcatttgcacttgtagactttgcttatagaaaatgattttatatacaaaaa 33425  T
Q  196 accgtgttatgacttttgtgttttttctttagaaatatgtgtaaattgaaggagtt 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33426 accgtgttatgacttttgtgttttttctttagaaatatgtgtaaattgaaggagtt 33481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 33237 - 33287
Alignment:
Q  10 atcataggccagctatagaacagagaggatacaaagcgaccttaactagtg 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33237 atcataggccagctatagaacagagaggatacaaagcgaccttaactagtg 33287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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