View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5576-Insertion-2 (Length: 1081)

Name: NF5576-Insertion-2
Description: NF5576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5576-Insertion-2
NF5576-Insertion-2
[»] chr8 (4 HSPs)
chr8 (489-773)||(41374239-41374527)
chr8 (750-1033)||(41367388-41367678)
chr8 (15-253)||(36826217-36826471)
chr8 (696-740)||(289160-289204)
[»] chr5 (4 HSPs)
chr5 (20-275)||(33433173-33433445)
chr5 (345-491)||(33432928-33433072)
chr5 (390-490)||(33433812-33433910)
chr5 (700-751)||(4409365-4409416)
[»] chr3 (5 HSPs)
chr3 (20-275)||(19251952-19252223)
chr3 (345-491)||(19251707-19251851)
chr3 (390-490)||(19252590-19252688)
chr3 (709-773)||(19674595-19674659)
chr3 (704-756)||(32711233-32711285)
[»] chr7 (4 HSPs)
chr7 (115-155)||(25442173-25442213)
chr7 (417-491)||(25442213-25442285)
chr7 (701-755)||(34564985-34565039)
chr7 (697-752)||(40364638-40364693)
[»] chr6 (3 HSPs)
chr6 (700-773)||(24985993-24986066)
chr6 (700-740)||(7649860-7649900)
chr6 (697-740)||(30732415-30732457)
[»] chr4 (3 HSPs)
chr4 (704-776)||(11045654-11045726)
chr4 (704-776)||(11047502-11047574)
chr4 (367-465)||(12826129-12826227)


Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 489 - 773
Target Start/End: Complemental strand, 41374527 - 41374239
Alignment:
Q  489 tgagtaaatgagaataaacaagccatttagcagtgaccacatcaatagttcatgaaaccagcaaaaagccaaaaactaataaagaacaatcatacagaga 588  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41374527 tgagtaaatgagaataaacaagccatttagcagtgaccacatcaatagttcatgaaaccagcaaaaagccaaaaactaataaagaacaatcatacagaga 41374428  T
Q  589 atcaaaaataaatactagttcctgaaacaaaactggaatctaatgccaaatactcgtaccggcccc----taaaacttataataacctttcatcatactc 684  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||| |||||||||||    
T  41374427 atcaaaaataaatacgagttcctgaaacaaaactggaatctaatgccaaatactcgtaccggcccctaattaaaacttataataacctctcatcatactc 41374328  T
Q  685 gtagcagaaacaatatatttggtctataatatagaccaaataaatcaattattcaactagcctaaaaagtgagttgtctcttataataa 773  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41374327 gtaggagaaacaatatatttggtctataatatagatcaaataaatcaattattcaactagcctaaaaagtgagttgtctcttataataa 41374239  T

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Target: chr8; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 750 - 1033
Target Start/End: Complemental strand, 41367678 - 41367388
Alignment:
Q  750 aaagtgagttgtctcttataataaagacggaggtagtatcattttttaccaccattgaactttcaaaactaaatatagagcctaattgacgggaaacggg 849  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41367678 aaagtgagttgtctcttataataaagacggaggtagtatcattttttaccaccattgaactttcaaaactaaatatagagcctaattgacgggaaacggg 41367579  T
Q  850 ggaaagtgacatatgatcagctgctacttgattttgaattagaaggaagaaaggcactctccctcttgatgtgtttaattagaagaaagctcccttatca 949  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41367578 ggaaagtgacatatgatcagctgctacttgattttgaattagaaggaagaaaggcactctccctcttgatgtgtttaattagaagaaagctcccttatca 41367479  T
Q  950 gtatatatctg-aagtgc-atatctg-tgtg-tcctctgataccaagttttcattcc-agcac-accagtacctccatg-tagcagatttt 1033  Q
    ||||||||||| |||||| ||||||| |||| ||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||    
T  41367478 gtatatatctgaaagtgcaatatctgttgtgttcctctgataccaagttttcattccaagcacaaccagtacctccatgttagcagatttt 41367388  T

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Target: chr8; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 15 - 253
Target Start/End: Complemental strand, 36826471 - 36826217
Alignment:
Q  15 ccgctatgccgctattcccgctagagacttcagaattctcggtcatgtcttctctcattcctccaatatcctctgtaattcaaatttagggtttacaaat 114  Q
    |||| ||||||||||||||||||||||| |||||||||| || | |||||||||||||||||||||||||||| ||||||||| ||||||| |||||| |    
T  36826471 ccgccatgccgctattcccgctagagacctcagaattcttggccctgtcttctctcattcctccaatatcctcggtaattcaattttagggcttacaatt 36826372  T
Q  115 taattcttgtttgtgaattaaggtttcatttttcctaatta-----------------tttatagcgtgagagaaagccatggtagtgaatttggagttt 197  Q
    | | | | |||| ||||||| |||||| | |||| ||||||                 ||||||||| |||||||||| ||||| |||||||||||||||    
T  36826371 tcaat-tagtttatgaattagggtttcttgtttcttaattatttatttatttattgtgtttatagcgagagagaaagcaatggttgtgaatttggagttt 36826273  T
Q  198 ataaaagcaattgttacagcaaaaaagattttgttacttgatccattgcgtaaaga 253  Q
    ||||||||||||||||||||  || ||||||| || |||||||| |||||| ||||    
T  36826272 ataaaagcaattgttacagctgaagagattttattgcttgatcctttgcgtcaaga 36826217  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 696 - 740
Target Start/End: Complemental strand, 289204 - 289160
Alignment:
Q  696 aatatatttggtctataatatagaccaaataaatcaattattcaa 740  Q
    ||||||||||||||||||||||||||||||| || || |||||||    
T  289204 aatatatttggtctataatatagaccaaatacattaaatattcaa 289160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 2e-49; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 20 - 275
Target Start/End: Complemental strand, 33433445 - 33433173
Alignment:
Q  20 atgccgctattcccgctagagacttcagaattctcggtcatgtcttctctcattcctccaatatcctctgtaattcaaatttagggtttacaaattaatt 119  Q
    ||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||| || | |    
T  33433445 atgccgccattcccgctagagacctcaaaattctcggtcatgtcttctctcattcctccaatatcctcgataattcaattttagggtttacaatttcaat 33433346  T
Q  120 cttgtttgtgaattaaggtttcatttttcctaatta-----------------tttatagcgtgagagaaagccatggtagtgaatttggagtttataaa 202  Q
    || |||||||||||| | |||||| |||| ||||||                 || ||| || || ||||||||||||||||||||||||||||||||||    
T  33433345 ctagtttgtgaattaggatttcatgtttcttaattaattctttatttattgtgttaataacgagaaagaaagccatggtagtgaatttggagtttataaa 33433246  T
Q  203 agcaattgttacagcaaaaaagattttgttacttgatccattgcgtaaagaagtggtttcagtgaaaacaaca 275  Q
    |||||||||||||   ||| ||||||||||||||||||| ||| || |||| || ||||| ||| ||||||||    
T  33433245 agcaattgttacattgaaagagattttgttacttgatcctttgtgtcaagaggtagtttccgtggaaacaaca 33433173  T

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Target: chr5; HSP #2
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 345 - 491
Target Start/End: Complemental strand, 33433072 - 33432928
Alignment:
Q  345 gaagatggaacatgtgtattgctgtatcaaagaatacctattttaaaccatttaatcctaacccttgaattaatttttgccacgtgttactcatctatgt 444  Q
    ||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||| | |||||||||| ||||||||||||||| |||||||||||     
T  33433072 gaagatggaacatgtgtattggtgtatcaaagaatgtctattttaaaccatttaatcccagcccttgaatttatttttgccacgtgtcactcatctatgc 33432973  T
Q  445 actgaagaggggtaaatggagcaagtgtgtaaatggagcaaagatga 491  Q
    |||||  |||||||||||||||||  |||||||||||||||||||||    
T  33432972 actgagcaggggtaaatggagcaa--gtgtaaatggagcaaagatga 33432928  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 390 - 490
Target Start/End: Original strand, 33433812 - 33433910
Alignment:
Q  390 aaccatttaatcctaacccttgaattaatttttgccacgtgttactcatctatgtactgaagaggggtaaatggagcaagtgtgtaaatggagcaaagat 489  Q
    ||||||||||||  | |||||||||| |||| || ||||||| |||||| |||| |||||| ||||||||||||||||   | |||||||||||||||||    
T  33433812 aaccatttaatcacagcccttgaatttatttctgtcacgtgtcactcatatatgcactgaataggggtaaatggagca--ggcgtaaatggagcaaagat 33433909  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 700 - 751
Target Start/End: Complemental strand, 4409416 - 4409365
Alignment:
Q  700 tatttggtctataatatagaccaaataaatcaattattcaactagcctaaaa 751  Q
    ||||||||||||||||||||| ||||| |||||| |||||| ||| ||||||    
T  4409416 tatttggtctataatatagactaaatacatcaataattcaattagtctaaaa 4409365  T

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Target: chr3 (Bit Score: 91; Significance: 2e-43; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 20 - 275
Target Start/End: Complemental strand, 19252223 - 19251952
Alignment:
Q  20 atgccgctattcccgctagagacttcagaattctcggtcatgtcttctctcattcctccaatatcctctgtaattcaaatttagggtttacaaattaatt 119  Q
    ||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||| || | |    
T  19252223 atgccgccattcccgctagagacctcaaaattctcggtcatgtcttctctcattcctccaatatcctcgataattcaattttagggtttacaatttcaat 19252124  T
Q  120 cttgtttgtgaattaaggtttcatttttcctaatta----------------tttatagcgtgagagaaagccatggtagtgaatttggagtttataaaa 203  Q
    || |||||||||||| | |||||| |||  ||||||                || ||| || || | |||||||||||||||||||||||||||||||||    
T  19252123 ctagtttgtgaattaggatttcatgtttattaattaattctttattattgtgttaataacgagaaataaagccatggtagtgaatttggagtttataaaa 19252024  T
Q  204 gcaattgttacagcaaaaaagattttgttacttgatccattgcgtaaagaagtggtttcagtgaaaacaaca 275  Q
    |||| |||||||   ||| ||||||||||||||||||| ||| || |||| || ||||| ||| ||||||||    
T  19252023 gcaactgttacattgaaagagattttgttacttgatcctttgtgtcaagaggtagtttccgtggaaacaaca 19251952  T

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Target: chr3; HSP #2
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 345 - 491
Target Start/End: Complemental strand, 19251851 - 19251707
Alignment:
Q  345 gaagatggaacatgtgtattgctgtatcaaagaatacctattttaaaccatttaatcctaacccttgaattaatttttgccacgtgttactcatctatgt 444  Q
    ||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||| |  ||| ||||| ||||||||||||||| |||||||||||     
T  19251851 gaagatggaacatgtgtattgttgtatcaaagaatgtctattttaaaccatttaatcccaggcctggaatttatttttgccacgtgtcactcatctatgc 19251752  T
Q  445 actgaagaggggtaaatggagcaagtgtgtaaatggagcaaagatga 491  Q
    |||||| |||||||||||||||||  |||||||||||| ||||||||    
T  19251751 actgaacaggggtaaatggagcaa--gtgtaaatggagtaaagatga 19251707  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 390 - 490
Target Start/End: Original strand, 19252590 - 19252688
Alignment:
Q  390 aaccatttaatcctaacccttgaattaatttttgccacgtgttactcatctatgtactgaagaggggtaaatggagcaagtgtgtaaatggagcaaagat 489  Q
    ||||||||||||  |||||||||||| |||| || ||||||| |||||| |||| |||||| ||||||||||||||||   | |||||||||||||||||    
T  19252590 aaccatttaatcacaacccttgaatttatttctgtcacgtgtcactcatatatgcactgaacaggggtaaatggagca--ggcgtaaatggagcaaagat 19252687  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 709 - 773
Target Start/End: Complemental strand, 19674659 - 19674595
Alignment:
Q  709 tataatatagaccaaataaatcaattattcaactagcctaaaaagtgagttgtctcttataataa 773  Q
    |||| ||||||||||||| | |||||||||||  | |||||||||||| |||||| |||||||||    
T  19674659 tatattatagaccaaatacaacaattattcaatgaacctaaaaagtgaattgtcttttataataa 19674595  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 704 - 756
Target Start/End: Complemental strand, 32711285 - 32711233
Alignment:
Q  704 tggtctataatatagaccaaataaatcaattattcaactagcctaaaaagtga 756  Q
    ||||||||||||||| ||||||| |||||||||||||  | ||||||||||||    
T  32711285 tggtctataatataggccaaatacatcaattattcaatgaacctaaaaagtga 32711233  T

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Target: chr7 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 25442213 - 25442173
Alignment:
Q  115 taattcttgtttgtgaattaaggtttcatttttcctaatta 155  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  25442213 taattcttgtttgtgaattaaggtttcatttttcctaatta 25442173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 417 - 491
Target Start/End: Original strand, 25442213 - 25442285
Alignment:
Q  417 atttttgccacgtgttactcatctatgtactgaagaggggtaaatggagcaagtgtgtaaatggagcaaagatga 491  Q
    ||||||||||| ||| ||||||||||   ||||| |||||||||||||||||  |||||||||||||| ||||||    
T  25442213 atttttgccacatgtcactcatctataccctgaacaggggtaaatggagcaa--gtgtaaatggagcatagatga 25442285  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 701 - 755
Target Start/End: Original strand, 34564985 - 34565039
Alignment:
Q  701 atttggtctataatatagaccaaataaatcaattattcaactagcctaaaaagtg 755  Q
    |||||||||||||||||||||| ||| |||| |||||||| || |||||||||||    
T  34564985 atttggtctataatatagaccacatacatcacttattcaattaacctaaaaagtg 34565039  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 697 - 752
Target Start/End: Original strand, 40364638 - 40364693
Alignment:
Q  697 atatatttggtctataatatagaccaaataaatcaattattcaactagcctaaaaa 752  Q
    ||||||||||| |||| |||||| |||||| ||||||||||||| || ||||||||    
T  40364638 atatatttggtttatattatagatcaaatacatcaattattcaattaacctaaaaa 40364693  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 700 - 773
Target Start/End: Original strand, 24985993 - 24986066
Alignment:
Q  700 tatttggtctataatatagaccaaataaatcaattattcaactagcctaaaaagtgagttgtctcttataataa 773  Q
    |||||| |||||| ||||||||| ||| ||||||||| |||  | |||||||||||| ||||||||||||||||    
T  24985993 tatttgatctatattatagaccatatacatcaattatccaatgaacctaaaaagtgaattgtctcttataataa 24986066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 700 - 740
Target Start/End: Original strand, 7649860 - 7649900
Alignment:
Q  700 tatttggtctataatatagaccaaataaatcaattattcaa 740  Q
    ||||||||||| |||||| ||||||||||||||||||||||    
T  7649860 tatttggtctaaaatatataccaaataaatcaattattcaa 7649900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 697 - 740
Target Start/End: Complemental strand, 30732457 - 30732415
Alignment:
Q  697 atatatttggtctataatatagaccaaataaatcaattattcaa 740  Q
    |||||||||||||||||| ||||||||||| |||||||||||||    
T  30732457 atatatttggtctataat-tagaccaaatacatcaattattcaa 30732415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 704 - 776
Target Start/End: Complemental strand, 11045726 - 11045654
Alignment:
Q  704 tggtctataatatagaccaaataaatcaattattcaactagcctaaaaagtgagttgtctcttataataaaga 776  Q
    ||||||||||||||||| ||||| || | ||||||||  | |||||||||||| ||||||| |||||||||||    
T  11045726 tggtctataatatagactaaatatattagttattcaatgaacctaaaaagtgaattgtctcatataataaaga 11045654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 704 - 776
Target Start/End: Complemental strand, 11047574 - 11047502
Alignment:
Q  704 tggtctataatatagaccaaataaatcaattattcaactagcctaaaaagtgagttgtctcttataataaaga 776  Q
    ||||||||||||||||| ||||| || | ||||||||  | |||||||||||| ||||||| |||||||||||    
T  11047574 tggtctataatatagactaaatatattagttattcaatgaacctaaaaagtgaattgtctcatataataaaga 11047502  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 367 - 465
Target Start/End: Complemental strand, 12826227 - 12826129
Alignment:
Q  367 tgtatcaaagaatacctattttaaaccatttaatcctaacccttgaattaatttttgccacgtgttactcatctatgtactgaagaggggtaaatggag 465  Q
    ||||||| | ||| |||||||||||||||| ||||| |||| || | ||   ||||||||| ||| ||||||||| | | |||| ||||||||||||||    
T  12826227 tgtatcacaaaatgcctattttaaaccattcaatccaaaccgttaatttttgttttgccacatgtcactcatctaggcattgaacaggggtaaatggag 12826129  T

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