View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5576-Insertion-4 (Length: 676)

Name: NF5576-Insertion-4
Description: NF5576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5576-Insertion-4
NF5576-Insertion-4
[»] chr1 (33 HSPs)
chr1 (8-676)||(2218014-2218686)
chr1 (201-302)||(2225690-2225791)
chr1 (343-422)||(22881567-22881646)
chr1 (347-419)||(48040418-48040488)
chr1 (345-393)||(16297223-16297271)
chr1 (344-403)||(10233313-10233374)
chr1 (342-422)||(113328-113413)
chr1 (343-392)||(6427545-6427594)
chr1 (342-379)||(16812639-16812676)
chr1 (343-392)||(37598901-37598950)
chr1 (343-391)||(1815328-1815376)
chr1 (343-422)||(35919226-35919306)
chr1 (345-393)||(42359391-42359439)
chr1 (342-389)||(18556384-18556431)
chr1 (343-422)||(37055807-37055886)
chr1 (344-391)||(40258874-40258921)
chr1 (342-388)||(6574051-6574097)
chr1 (343-393)||(15765827-15765877)
chr1 (343-377)||(31694639-31694673)
chr1 (343-392)||(9828125-9828174)
chr1 (343-392)||(18337399-18337448)
chr1 (342-379)||(35702541-35702578)
chr1 (343-392)||(40917830-40917879)
chr1 (342-379)||(47989591-47989628)
chr1 (465-533)||(2225586-2225654)
chr1 (345-393)||(11412709-11412757)
chr1 (342-378)||(22515826-22515862)
chr1 (394-422)||(22515889-22515917)
chr1 (343-379)||(22947813-22947849)
chr1 (386-422)||(24577180-24577216)
chr1 (343-379)||(30359448-30359484)
chr1 (394-422)||(41877472-41877500)
chr1 (394-422)||(46348385-46348413)
[»] chr7 (21 HSPs)
chr7 (350-416)||(18215144-18215210)
chr7 (343-393)||(1433528-1433578)
chr7 (342-392)||(7133211-7133261)
chr7 (343-389)||(24339726-24339772)
chr7 (343-392)||(5409771-5409820)
chr7 (343-392)||(29763129-29763178)
chr7 (343-391)||(21880223-21880271)
chr7 (344-391)||(20549862-20549909)
chr7 (343-386)||(35862027-35862070)
chr7 (388-422)||(2334279-2334313)
chr7 (342-392)||(6490786-6490836)
chr7 (343-392)||(598278-598327)
chr7 (343-392)||(9778575-9778624)
chr7 (343-392)||(30813867-30813916)
chr7 (343-392)||(43027404-43027453)
chr7 (343-387)||(5307331-5307375)
chr7 (343-387)||(7438792-7438836)
chr7 (394-422)||(9408336-9408364)
chr7 (343-415)||(28155606-28155673)
chr7 (344-392)||(32287404-32287452)
chr7 (348-392)||(43250074-43250118)
[»] scaffold0020 (1 HSPs)
scaffold0020 (342-415)||(135262-135335)
[»] chr2 (19 HSPs)
chr2 (18-114)||(36247281-36247381)
chr2 (343-392)||(26769592-26769641)
chr2 (343-426)||(44635523-44635612)
chr2 (343-392)||(37419824-37419873)
chr2 (343-379)||(11223793-11223829)
chr2 (344-392)||(28596539-28596587)
chr2 (345-391)||(2438661-2438707)
chr2 (205-263)||(9994741-9994799)
chr2 (343-393)||(10535685-10535735)
chr2 (343-393)||(24975255-24975305)
chr2 (343-393)||(32749754-32749804)
chr2 (343-377)||(35056964-35056998)
chr2 (342-392)||(38117098-38117148)
chr2 (342-391)||(18840952-18841001)
chr2 (347-392)||(37411188-37411233)
chr2 (343-392)||(42511322-42511371)
chr2 (394-422)||(14996225-14996253)
chr2 (394-422)||(20539676-20539704)
chr2 (343-379)||(39323321-39323357)
[»] scaffold0009 (1 HSPs)
scaffold0009 (350-416)||(188446-188512)
[»] chr4 (27 HSPs)
chr4 (343-393)||(18513175-18513225)
chr4 (345-392)||(22440559-22440606)
chr4 (341-392)||(23292924-23292975)
chr4 (343-422)||(37203293-37203371)
chr4 (343-422)||(11596297-11596382)
chr4 (344-414)||(24544019-24544088)
chr4 (346-392)||(28084594-28084640)
chr4 (343-422)||(42640558-42640643)
chr4 (343-392)||(24343583-24343632)
chr4 (343-391)||(715545-715593)
chr4 (343-391)||(752871-752919)
chr4 (344-392)||(3947702-3947750)
chr4 (344-392)||(14465006-14465054)
chr4 (343-391)||(16073465-16073513)
chr4 (343-391)||(29205539-29205587)
chr4 (344-392)||(40965341-40965389)
chr4 (344-391)||(5922532-5922579)
chr4 (342-389)||(28964187-28964234)
chr4 (389-422)||(16303263-16303296)
chr4 (344-393)||(17425348-17425397)
chr4 (343-392)||(19482749-19482798)
chr4 (343-391)||(3064868-3064916)
chr4 (348-392)||(3712458-3712502)
chr4 (343-379)||(5775304-5775340)
chr4 (394-422)||(6485613-6485641)
chr4 (343-391)||(16184902-16184950)
chr4 (343-375)||(42015047-42015079)
[»] chr6 (24 HSPs)
chr6 (346-422)||(9025448-9025524)
chr6 (343-391)||(10339054-10339102)
chr6 (344-416)||(31959194-31959268)
chr6 (343-393)||(9107299-9107349)
chr6 (343-392)||(8365448-8365497)
chr6 (343-422)||(8805524-8805602)
chr6 (343-422)||(9911482-9911558)
chr6 (344-393)||(17841530-17841579)
chr6 (343-379)||(426478-426514)
chr6 (343-391)||(4878014-4878061)
chr6 (343-422)||(7086824-7086904)
chr6 (343-422)||(7938145-7938219)
chr6 (388-422)||(9522920-9522954)
chr6 (343-393)||(10294187-10294237)
chr6 (388-422)||(21395304-21395338)
chr6 (342-391)||(13360312-13360361)
chr6 (343-392)||(17327590-17327639)
chr6 (345-377)||(5569834-5569866)
chr6 (343-415)||(9027214-9027286)
chr6 (343-379)||(10770607-10770643)
chr6 (382-422)||(10770664-10770704)
chr6 (357-393)||(21044828-21044864)
chr6 (357-393)||(21068086-21068122)
chr6 (343-391)||(34894968-34895016)
[»] chr8 (19 HSPs)
chr8 (18-114)||(19180559-19180659)
chr8 (343-422)||(8343001-8343086)
chr8 (343-391)||(18407790-18407838)
chr8 (343-392)||(36450694-36450743)
chr8 (345-392)||(44067597-44067644)
chr8 (388-422)||(2572052-2572086)
chr8 (343-393)||(22652056-22652106)
chr8 (343-393)||(30067968-30068018)
chr8 (426-467)||(4298955-4298996)
chr8 (343-392)||(12570438-12570487)
chr8 (343-392)||(12570664-12570713)
chr8 (344-393)||(29447040-29447089)
chr8 (343-392)||(29510233-29510282)
chr8 (342-379)||(37283754-37283791)
chr8 (340-388)||(17751730-17751778)
chr8 (340-388)||(17760717-17760765)
chr8 (394-422)||(20873098-20873126)
chr8 (343-379)||(26902104-26902140)
chr8 (336-392)||(34450954-34451010)
[»] chr5 (18 HSPs)
chr5 (343-403)||(2436970-2437030)
chr5 (346-393)||(39268541-39268588)
chr5 (338-392)||(42893430-42893484)
chr5 (343-392)||(21576685-21576734)
chr5 (343-392)||(32766872-32766921)
chr5 (343-391)||(19820328-19820376)
chr5 (342-422)||(24906251-24906331)
chr5 (343-422)||(15884017-15884096)
chr5 (343-392)||(14873592-14873641)
chr5 (342-379)||(17123130-17123167)
chr5 (343-392)||(31084398-31084447)
chr5 (342-379)||(35017126-35017163)
chr5 (343-379)||(10298633-10298669)
chr5 (343-391)||(19552476-19552524)
chr5 (343-379)||(22423764-22423800)
chr5 (345-393)||(23015926-23015974)
chr5 (394-422)||(33178054-33178082)
chr5 (342-378)||(39698636-39698672)
[»] chr3 (17 HSPs)
chr3 (343-422)||(11610550-11610628)
chr3 (342-393)||(34185051-34185102)
chr3 (343-392)||(41961579-41961628)
chr3 (345-392)||(24204983-24205030)
chr3 (344-416)||(25211574-25211648)
chr3 (345-392)||(25775577-25775624)
chr3 (343-422)||(4990912-4990997)
chr3 (344-393)||(1389907-1389956)
chr3 (343-392)||(25074865-25074914)
chr3 (343-392)||(27505321-27505370)
chr3 (343-392)||(40052382-40052431)
chr3 (343-392)||(55401145-55401194)
chr3 (394-422)||(1509568-1509596)
chr3 (343-379)||(20503548-20503584)
chr3 (382-422)||(27505275-27505315)
chr3 (343-391)||(40993275-40993323)
chr3 (394-422)||(55401104-55401132)
[»] scaffold0793 (1 HSPs)
scaffold0793 (343-391)||(4821-4869)
[»] scaffold0475 (1 HSPs)
scaffold0475 (343-386)||(3384-3427)
[»] scaffold0057 (1 HSPs)
scaffold0057 (343-393)||(24106-24155)
[»] scaffold0450 (1 HSPs)
scaffold0450 (343-392)||(8564-8613)
[»] scaffold0380 (1 HSPs)
scaffold0380 (343-392)||(8671-8720)
[»] scaffold0053 (1 HSPs)
scaffold0053 (343-392)||(8868-8917)
[»] scaffold0003 (1 HSPs)
scaffold0003 (343-392)||(241675-241724)
[»] scaffold0652 (1 HSPs)
scaffold0652 (344-392)||(403-451)
[»] scaffold0171 (1 HSPs)
scaffold0171 (429-465)||(23371-23407)
[»] scaffold0027 (1 HSPs)
scaffold0027 (342-378)||(46741-46777)
[»] scaffold0011 (1 HSPs)
scaffold0011 (394-422)||(17751-17779)


Alignment Details
Target: chr1 (Bit Score: 624; Significance: 0; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 624; E-Value: 0
Query Start/End: Original strand, 8 - 676
Target Start/End: Complemental strand, 2218686 - 2218014
Alignment:
Q  8 atgttactgttttttcactgacccatttacaatctgcttaaccgatttattgtgtcacattggtggtgtatattgtttctttggaagggtttagtccacc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2218686 atgttactgttttttcactgacccatttacaatctgcttaaccgatttattgtgtcacattggtggtgtatattgtttctttggaagggtttagtccacc 2218587  T
Q  108 gtttttactattctttttgtttatagtgtaattaccttgttttgtttcatggcgaatgatacac----acacacgcggacactgacatatcgatactgat 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||    
T  2218586 gtttttactattctttttgtttatagtgtaattaccttgttttgtttcatggcgaatgatacacgcacacacacgcggacactgacatatcgatactgat 2218487  T
Q  204 aagtaattgtttgagagaattgaatagttgaatatggtcacatgtgtcggtgttgtgtcagggttggtgttgtgtatactgacttaccatcacatgtttt 303  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2218486 aagtaatagtttgagagaattgaatagttgaatatggtcacatgtgtcggtgttgtgtcagggttggtgttgtgtatactgacttaccatcacatgtttt 2218387  T
Q  304 acaccgaagatgtctttaatccaaactgttgttgctacactatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacacaacaccgacac 403  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  2218386 acaccgaagatgtctttaatccaaagtgttgttgctacactatgaagcacggacactcctcagattaggcgtgtcctagtgtcggacacgacaccgacac 2218287  T
Q  404 ttgtaattacactaaattacgtgtatctgtgtcgtgttcgtgttcgtatccgtgcttcataggtgctacattatttatggatgttcattttatatctttg 503  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2218286 ttgtaattacactaaattatgtgtatctgtgtcgtgttcgtgtccgtatccgtgcttcataggtgctacattatttatggttgttcattttatatctttg 2218187  T
Q  504 gacttttaacggagactaggccatgatttgatttcttcttttacattgaattctcagtttaaaagtaattaactaatttatgatttataatatcaatggt 603  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2218186 gacttttaacggagactaggccatgatttgatttcttcttttacattgaattctcagtttaaaagtaattaactaatttatgatttataatatcaatggt 2218087  T
Q  604 tgatttgttcatccttaaattgtaaaatgaattgctcacttttgaggagacaaatcccttattttgcatatgt 676  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2218086 tgatttgttcatccttaagttgtaaaatgaattgctcacttttgaggagacaaatcccttattttgcatatgt 2218014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 201 - 302
Target Start/End: Complemental strand, 2225791 - 2225690
Alignment:
Q  201 gataagtaattgtttgagagaattgaatagttgaatatggtcacatgtgtcggtgttgtgtcagggttggtgttgtgtatactgacttaccatcacatgt 300  Q
    ||||| |||| |||||||| ||||||||||||||||||||||| ||||||||| || ||||| || ||||| |||||||||||||||||||| |||||||    
T  2225791 gataattaatagtttgagaaaattgaatagttgaatatggtcaaatgtgtcggcgtggtgtcgggcttggtattgtgtatactgacttaccaacacatgt 2225692  T
Q  301 tt 302  Q
    ||    
T  2225691 tt 2225690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 343 - 422
Target Start/End: Original strand, 22881567 - 22881646
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacacaacaccgacacttgtaattacactaaatta 422  Q
    ||||||||||||| |||||||| |||||| |||||||  ||||||    | |||||||||||||||||||||||||||||    
T  22881567 ctatgaagcacggacactcctcggattagacgtgtcccggtgtcgtgtccgacaccgacacttgtaattacactaaatta 22881646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 347 - 419
Target Start/End: Original strand, 48040418 - 48040488
Alignment:
Q  347 gaagcacgggcactcctcagattaggcgtgtcctagtgtcggacacaacaccgacacttgtaattacactaaa 419  Q
    ||||||||| ||||||||  ||||||||||||| ||||||||||||   ||||||||||||| ||||||||||    
T  48040418 gaagcacggacactcctccaattaggcgtgtcccagtgtcggacac--gaccgacacttgtatttacactaaa 48040488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 345 - 393
Target Start/End: Original strand, 16297223 - 16297271
Alignment:
Q  345 atgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacaca 393  Q
    ||||||||||| |||||||| ||||||||||||||| ||||||||||||    
T  16297223 atgaagcacggacactcctcggattaggcgtgtcctggtgtcggacaca 16297271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 403
Target Start/End: Complemental strand, 10233374 - 10233313
Alignment:
Q  344 tatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacaca--acaccgacac 403  Q
    |||||||||||| |||||||| ||||||| ||||||| ||||||||||||  ||||||||||    
T  10233374 tatgaagcacggacactcctctgattaggtgtgtcctggtgtcggacacatgacaccgacac 10233313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 342 - 422
Target Start/End: Complemental strand, 113413 - 113328
Alignment:
Q  342 actatgaagcacgggcactcctcagattaggcgtgtcctagtgtcg-----gacacaacaccgacacttgtaattacactaaatta 422  Q
    ||||||||||| ||||||||||| ||||||||||||||  |||| |     ||||| ||||| ||||||||||||||||| |||||    
T  113413 actatgaagcatgggcactcctcggattaggcgtgtcccggtgttggacacgacacgacacctacacttgtaattacactgaatta 113328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 343 - 392
Target Start/End: Complemental strand, 6427594 - 6427545
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    ||||||||||||| ||||| |||||||||||||||||  |||||||||||    
T  6427594 ctatgaagcacggacactcatcagattaggcgtgtcccggtgtcggacac 6427545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 342 - 379
Target Start/End: Complemental strand, 16812676 - 16812639
Alignment:
Q  342 actatgaagcacgggcactcctcagattaggcgtgtcc 379  Q
    |||||||||||||| |||||||||||||||||||||||    
T  16812676 actatgaagcacggacactcctcagattaggcgtgtcc 16812639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 343 - 392
Target Start/End: Complemental strand, 37598950 - 37598901
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    ||||||||||||| |||||||| |||||||||||||| | ||||||||||    
T  37598950 ctatgaagcacggacactcctcggattaggcgtgtcccattgtcggacac 37598901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 343 - 391
Target Start/End: Complemental strand, 1815376 - 1815328
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggaca 391  Q
    ||||||| ||||| |||||||||||||||||||||||  ||||||||||    
T  1815376 ctatgaatcacggtcactcctcagattaggcgtgtcccggtgtcggaca 1815328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 343 - 422
Target Start/End: Original strand, 35919226 - 35919306
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgt-cctagtgtcggacacaacaccgacacttgtaattacactaaatta 422  Q
    ||||||||||||| || ||||| |||||||||||| ||  ||||| ||||| |||| ||||||| |||||||||| |||||    
T  35919226 ctatgaagcacggacagtcctccgattaggcgtgtcccgcgtgtccgacacgacacggacacttataattacactgaatta 35919306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 345 - 393
Target Start/End: Original strand, 42359391 - 42359439
Alignment:
Q  345 atgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacaca 393  Q
    ||||||||||| |||||||| ||||||||||||||  ||||||||||||    
T  42359391 atgaagcacggacactcctcggattaggcgtgtcccggtgtcggacaca 42359439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 342 - 389
Target Start/End: Original strand, 18556384 - 18556431
Alignment:
Q  342 actatgaagcacgggcactcctcagattaggcgtgtcctagtgtcgga 389  Q
    |||||||||||||| |||| ||| |||||||||||||| |||||||||    
T  18556384 actatgaagcacggacacttctcggattaggcgtgtcccagtgtcgga 18556431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 343 - 422
Target Start/End: Original strand, 37055807 - 37055886
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacacaacaccgacacttgtaattacactaaatta 422  Q
    |||||| |||||| ||||||  |||||||||||||||  |||||  |||| | || || |||||||||||||||||||||    
T  37055807 ctatgatgcacggccactccgtagattaggcgtgtccaggtgtcacacacgatactgatacttgtaattacactaaatta 37055886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 344 - 391
Target Start/End: Original strand, 40258874 - 40258921
Alignment:
Q  344 tatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggaca 391  Q
    ||||||||| || |||||||| ||||||||||||||| ||||||||||    
T  40258874 tatgaagcatggacactcctcggattaggcgtgtcctggtgtcggaca 40258921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 342 - 388
Target Start/End: Complemental strand, 6574097 - 6574051
Alignment:
Q  342 actatgaagcacgggcactcctcagattaggcgtgtcctagtgtcgg 388  Q
    |||||||||||||| |||||||  |||||||||||||| ||||||||    
T  6574097 actatgaagcacggtcactccttggattaggcgtgtcccagtgtcgg 6574051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 15765877 - 15765827
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacaca 393  Q
    ||||||||||||| ||||| || |||||||||||||| |||||| ||||||    
T  15765877 ctatgaagcacggacactcttcggattaggcgtgtcccagtgtcagacaca 15765827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 343 - 377
Target Start/End: Original strand, 31694639 - 31694673
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgt 377  Q
    ||||||||||||| |||||||||||||||||||||    
T  31694639 ctatgaagcacggacactcctcagattaggcgtgt 31694673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 392
Target Start/End: Complemental strand, 9828174 - 9828125
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    ||||||||||||| |||||||| |||||| |||||||  |||||||||||    
T  9828174 ctatgaagcacggacactcctcggattagacgtgtcccggtgtcggacac 9828125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 392
Target Start/End: Complemental strand, 18337448 - 18337399
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    ||||||||||||| |||||||| ||| |||| ||||| ||||||||||||    
T  18337448 ctatgaagcacggacactcctcggatcaggcatgtcccagtgtcggacac 18337399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 379
Target Start/End: Original strand, 35702541 - 35702578
Alignment:
Q  342 actatgaagcacgggcactcctcagattaggcgtgtcc 379  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  35702541 actatgaagcacggacactcctcggattaggcgtgtcc 35702578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 392
Target Start/End: Complemental strand, 40917879 - 40917830
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    ||||||||||||| || ||||| ||||||||||||||  |||||||||||    
T  40917879 ctatgaagcacggacagtcctcggattaggcgtgtcccggtgtcggacac 40917830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 379
Target Start/End: Complemental strand, 47989628 - 47989591
Alignment:
Q  342 actatgaagcacgggcactcctcagattaggcgtgtcc 379  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  47989628 actatgaagcacggacactcctcggattaggcgtgtcc 47989591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 465 - 533
Target Start/End: Complemental strand, 2225654 - 2225586
Alignment:
Q  465 ggtgctacattatttatggatgttcattttatatctttggacttttaacggagactaggccatgatttg 533  Q
    ||||||||||| ||||| | |||| || |||| | |||||||||||||  ||||||||||| |||||||    
T  2225654 ggtgctacattgtttatagctgtttatgttatttatttggacttttaatagagactaggccttgatttg 2225586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 345 - 393
Target Start/End: Original strand, 11412709 - 11412757
Alignment:
Q  345 atgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacaca 393  Q
    ||||||||||| |||||||  ||| |||| |||||||||||||||||||    
T  11412709 atgaagcacggacactcctaggataaggcatgtcctagtgtcggacaca 11412757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 342 - 378
Target Start/End: Original strand, 22515826 - 22515862
Alignment:
Q  342 actatgaagcacgggcactcctcagattaggcgtgtc 378  Q
    |||||||||||||| |||||||| |||||||||||||    
T  22515826 actatgaagcacggacactcctcggattaggcgtgtc 22515862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 394 - 422
Target Start/End: Original strand, 22515889 - 22515917
Alignment:
Q  394 acaccgacacttgtaattacactaaatta 422  Q
    |||||||||||||||||||||||||||||    
T  22515889 acaccgacacttgtaattacactaaatta 22515917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 343 - 379
Target Start/End: Complemental strand, 22947849 - 22947813
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcc 379  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  22947849 ctatgaagcacggacactcctcggattaggcgtgtcc 22947813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 386 - 422
Target Start/End: Original strand, 24577180 - 24577216
Alignment:
Q  386 cggacacaacaccgacacttgtaattacactaaatta 422  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  24577180 cggacacgacaccgacacttgtaattacactgaatta 24577216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 343 - 379
Target Start/End: Complemental strand, 30359484 - 30359448
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcc 379  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  30359484 ctatgaagcacggacactcctcagatttggcgtgtcc 30359448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 394 - 422
Target Start/End: Original strand, 41877472 - 41877500
Alignment:
Q  394 acaccgacacttgtaattacactaaatta 422  Q
    |||||||||||||||||||||||||||||    
T  41877472 acaccgacacttgtaattacactaaatta 41877500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 394 - 422
Target Start/End: Original strand, 46348385 - 46348413
Alignment:
Q  394 acaccgacacttgtaattacactaaatta 422  Q
    |||||||||||||||||||||||||||||    
T  46348385 acaccgacacttgtaattacactaaatta 46348413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 350 - 416
Target Start/End: Original strand, 18215144 - 18215210
Alignment:
Q  350 gcacgggcactcctcagattaggcgtgtcctagtgtcggacacaacaccgacacttgtaattacact 416  Q
    |||||| |||||||||||||||||||||||  ||||||||||| |||||||||||||||| ||||||    
T  18215144 gcacggacactcctcagattaggcgtgtcccggtgtcggacacgacaccgacacttgtaactacact 18215210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 1433578 - 1433528
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacaca 393  Q
    ||||||||||||| |||||||| |||||| |||||||| ||||||||||||    
T  1433578 ctatgaagcacggacactcctcggattagacgtgtcctggtgtcggacaca 1433528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 392
Target Start/End: Original strand, 7133211 - 7133261
Alignment:
Q  342 actatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    |||||||||||||| | |||||||||||||| |||||| ||||||||||||    
T  7133211 actatgaagcacggacgctcctcagattaggtgtgtcccagtgtcggacac 7133261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 389
Target Start/End: Complemental strand, 24339772 - 24339726
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcgga 389  Q
    |||||||||||||||||||||| ||||||||||||||  ||||||||    
T  24339772 ctatgaagcacgggcactcctcggattaggcgtgtcccggtgtcgga 24339726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 343 - 392
Target Start/End: Original strand, 5409771 - 5409820
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    ||||||||||||| |||||||| ||||||||||||||  |||||||||||    
T  5409771 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacac 5409820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 343 - 392
Target Start/End: Original strand, 29763129 - 29763178
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    ||||||||||||| |||||||| |||||||||||||||  ||||||||||    
T  29763129 ctatgaagcacggacactcctcggattaggcgtgtcctgatgtcggacac 29763178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 343 - 391
Target Start/End: Complemental strand, 21880271 - 21880223
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggaca 391  Q
    ||||||||||||| |||| ||| ||||||||||||||| ||||||||||    
T  21880271 ctatgaagcacggacacttctcggattaggcgtgtcctggtgtcggaca 21880223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 344 - 391
Target Start/End: Complemental strand, 20549909 - 20549862
Alignment:
Q  344 tatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggaca 391  Q
    ||||||||||||||||||||| |||||||||||||  | |||||||||    
T  20549909 tatgaagcacgggcactcctcggattaggcgtgtctcattgtcggaca 20549862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 343 - 386
Target Start/End: Complemental strand, 35862070 - 35862027
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtc 386  Q
    ||||||||||||| |||||||| ||||||||||||||| |||||    
T  35862070 ctatgaagcacggacactcctcggattaggcgtgtcctcgtgtc 35862027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 388 - 422
Target Start/End: Complemental strand, 2334313 - 2334279
Alignment:
Q  388 gacacaacaccgacacttgtaattacactaaatta 422  Q
    ||||| |||||||||||||||||||||||||||||    
T  2334313 gacacgacaccgacacttgtaattacactaaatta 2334279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 342 - 392
Target Start/End: Complemental strand, 6490836 - 6490786
Alignment:
Q  342 actatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    |||||||||||||| |||||||| ||||| ||||||||  |||||||||||    
T  6490836 actatgaagcacggacactcctcggattaagcgtgtcccggtgtcggacac 6490786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 392
Target Start/End: Complemental strand, 598327 - 598278
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    ||||||||||||| |||| ||| ||||||||||||||  |||||||||||    
T  598327 ctatgaagcacggacacttctcggattaggcgtgtcccggtgtcggacac 598278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 392
Target Start/End: Complemental strand, 9778624 - 9778575
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    ||||||||||||| |||||||  ||||||||||||||  |||||||||||    
T  9778624 ctatgaagcacggacactccttggattaggcgtgtcccggtgtcggacac 9778575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 392
Target Start/End: Complemental strand, 30813916 - 30813867
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    ||||||||||||| |||||||| |||||||||||| ||  ||||||||||    
T  30813916 ctatgaagcacggacactcctcggattaggcgtgttctgatgtcggacac 30813867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 392
Target Start/End: Original strand, 43027404 - 43027453
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    ||||||||||||| ||||| || ||||||||||||||  |||||||||||    
T  43027404 ctatgaagcacggacactcatcggattaggcgtgtcccggtgtcggacac 43027453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 343 - 387
Target Start/End: Complemental strand, 5307375 - 5307331
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcg 387  Q
    ||||||||||||  |||||||  ||||||||||||||||||||||    
T  5307375 ctatgaagcacgtacactccttggattaggcgtgtcctagtgtcg 5307331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 343 - 387
Target Start/End: Complemental strand, 7438836 - 7438792
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcg 387  Q
    ||||||||||||| |||||||   |||||||||||||||||||||    
T  7438836 ctatgaagcacggacactccttgaattaggcgtgtcctagtgtcg 7438792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 394 - 422
Target Start/End: Original strand, 9408336 - 9408364
Alignment:
Q  394 acaccgacacttgtaattacactaaatta 422  Q
    |||||||||||||||||||||||||||||    
T  9408336 acaccgacacttgtaattacactaaatta 9408364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 343 - 415
Target Start/End: Complemental strand, 28155673 - 28155606
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacacaacaccgacacttgtaattacac 415  Q
    ||||||||||||| || ||||  ||||||||||||||| |||||     | ||||||||||||||||||||||    
T  28155673 ctatgaagcacggacattccttggattaggcgtgtcctggtgtc-----cgacaccgacacttgtaattacac 28155606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 344 - 392
Target Start/End: Original strand, 32287404 - 32287452
Alignment:
Q  344 tatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    |||||||||||| |||||||| ||||||| ||||||  |||||||||||    
T  32287404 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacac 32287452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 348 - 392
Target Start/End: Complemental strand, 43250118 - 43250074
Alignment:
Q  348 aagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    |||||||| ||||||||  |||||||||||||| |||||||||||    
T  43250118 aagcacggacactcctcgaattaggcgtgtcctggtgtcggacac 43250074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 342 - 415
Target Start/End: Original strand, 135262 - 135335
Alignment:
Q  342 actatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacacaacaccgacacttgtaattacac 415  Q
    |||||||||||||  ||| |||||||||||||||||||| ||||||||||| |||||||||| | |||||||||    
T  135262 actatgaagcacgaacacgcctcagattaggcgtgtcctggtgtcggacacgacaccgacacatataattacac 135335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 36247281 - 36247381
Alignment:
Q  18 tttttcactgacccatttacaatc----tgcttaaccgatttattgtgtcacattggtggtgtatattgtttctttggaagggtttagtccaccgttttt 113  Q
    ||||||||| |||||||| |||||    |||||||| |||||||||||| |  ||| |||||||||| |||||| ||||||||||||||||||| |||||    
T  36247281 tttttcacttacccattttcaatcaatttgcttaactgatttattgtgttatgttgatggtgtatatagtttctatggaagggtttagtccaccattttt 36247380  T
Q  114 a 114  Q
    |    
T  36247381 a 36247381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 343 - 392
Target Start/End: Complemental strand, 26769641 - 26769592
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    ||||||||||||| |||||||| |||||||||||||| ||||||||||||    
T  26769641 ctatgaagcacggacactcctcggattaggcgtgtcccagtgtcggacac 26769592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 343 - 426
Target Start/End: Complemental strand, 44635612 - 44635523
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtc-----ctagtgtcggaca-caacaccgacacttgtaattacactaaattacgtg 426  Q
    ||||||||||||| ||||||||||||||||||||||      | ||||| |||| | ||||||||||||||||||||||| |||||||||    
T  44635612 ctatgaagcacggacactcctcagattaggcgtgtctcggtgtcgtgtccgacaccgacaccgacacttgtaattacactgaattacgtg 44635523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 343 - 392
Target Start/End: Complemental strand, 37419873 - 37419824
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    ||||||||||||| |||||||| ||||||||||||||  |||||||||||    
T  37419873 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacac 37419824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 343 - 379
Target Start/End: Original strand, 11223793 - 11223829
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcc 379  Q
    ||||||||||||| |||||||||||||||||||||||    
T  11223793 ctatgaagcacggacactcctcagattaggcgtgtcc 11223829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 344 - 392
Target Start/End: Complemental strand, 28596587 - 28596539
Alignment:
Q  344 tatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    |||||||||||| |||||||| ||||||| |||||| ||||||||||||    
T  28596587 tatgaagcacggacactcctcggattaggagtgtccgagtgtcggacac 28596539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 345 - 391
Target Start/End: Original strand, 2438661 - 2438707
Alignment:
Q  345 atgaagcacgggcactcctcagattaggcgtgtcctagtgtcggaca 391  Q
    ||||||||||| |||||||| ||||||||||||||  ||||||||||    
T  2438661 atgaagcacggacactcctcggattaggcgtgtcccggtgtcggaca 2438707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 205 - 263
Target Start/End: Original strand, 9994741 - 9994799
Alignment:
Q  205 agtaattgtttgagagaattgaatagttgaatatggtcacatgtgtcggtgttgtgtca 263  Q
    |||||| |||||||| |||| ||||||||||| ||  |||||| |||||||||||||||    
T  9994741 agtaatagtttgagaaaattaaatagttgaatgtgaccacatgcgtcggtgttgtgtca 9994799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 10535685 - 10535735
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacaca 393  Q
    ||||||||||||  |||||||| ||||||||||||||| ||||| ||||||    
T  10535685 ctatgaagcacgaacactcctcggattaggcgtgtcctggtgtcagacaca 10535735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 24975255 - 24975305
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacaca 393  Q
    ||||||||||||| |||||||||||||||   ||||| |||||||||||||    
T  24975255 ctatgaagcacggacactcctcagattagatttgtcccagtgtcggacaca 24975305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 32749754 - 32749804
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacaca 393  Q
    ||||||||| ||| ||||||| |||| |||||||||| |||||||||||||    
T  32749754 ctatgaagcgcggacactccttagataaggcgtgtcccagtgtcggacaca 32749804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 343 - 377
Target Start/End: Complemental strand, 35056998 - 35056964
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgt 377  Q
    ||||||||||||| |||||||||||||||||||||    
T  35056998 ctatgaagcacggacactcctcagattaggcgtgt 35056964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 342 - 392
Target Start/End: Original strand, 38117098 - 38117148
Alignment:
Q  342 actatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    |||||||||||||| ||| |||| ||||||||||||||  |||||||||||    
T  38117098 actatgaagcacggacacccctcggattaggcgtgtcccggtgtcggacac 38117148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 391
Target Start/End: Original strand, 18840952 - 18841001
Alignment:
Q  342 actatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggaca 391  Q
    |||||||||||||| |||||||| ||||||| ||||||  ||||||||||    
T  18840952 actatgaagcacggacactcctcggattaggtgtgtcccggtgtcggaca 18841001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 392
Target Start/End: Original strand, 37411188 - 37411233
Alignment:
Q  347 gaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    ||||||| |||||||||| || ||||||||||| ||||||||||||    
T  37411188 gaagcacaggcactcctcggactaggcgtgtcccagtgtcggacac 37411233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 392
Target Start/End: Original strand, 42511322 - 42511371
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    ||||||||||||| |||||||| |||||| |||||||  |||||||||||    
T  42511322 ctatgaagcacggacactcctcggattagccgtgtccctgtgtcggacac 42511371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 394 - 422
Target Start/End: Original strand, 14996225 - 14996253
Alignment:
Q  394 acaccgacacttgtaattacactaaatta 422  Q
    |||||||||||||||||||||||||||||    
T  14996225 acaccgacacttgtaattacactaaatta 14996253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 394 - 422
Target Start/End: Original strand, 20539676 - 20539704
Alignment:
Q  394 acaccgacacttgtaattacactaaatta 422  Q
    |||||||||||||||||||||||||||||    
T  20539676 acaccgacacttgtaattacactaaatta 20539704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 343 - 379
Target Start/End: Complemental strand, 39323357 - 39323321
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcc 379  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  39323357 ctatgaagcacggacactcctcagattaggcctgtcc 39323321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 350 - 416
Target Start/End: Complemental strand, 188512 - 188446
Alignment:
Q  350 gcacgggcactcctcagattaggcgtgtcctagtgtcggacacaacaccgacacttgtaattacact 416  Q
    |||||| |||||||| ||||||||||||||| |||||||| || |||||||||||||| ||||||||    
T  188512 gcacggacactcctcggattaggcgtgtcctggtgtcggatacgacaccgacacttgttattacact 188446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 18513175 - 18513225
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacaca 393  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  18513175 ctatgaagcacggacactcctcagattaggcgtgtcctggtgtcggacaca 18513225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 345 - 392
Target Start/End: Original strand, 22440559 - 22440606
Alignment:
Q  345 atgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||    
T  22440559 atgaagcacggacactcctcggattaggcgtgtcctagtgtcggacac 22440606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 341 - 392
Target Start/End: Original strand, 23292924 - 23292975
Alignment:
Q  341 cactatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    ||||||||||||||| |||||||| ||||||||||||||  |||||||||||    
T  23292924 cactatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacac 23292975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 37203371 - 37203293
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacacaacaccgacacttgtaattacactaaatta 422  Q
    ||||||||||||| |||| ||| |||||| |||||||  ||||||||| | ||| | |||||||||||||||||||||||    
T  37203371 ctatgaagcacggacacttctcggattagacgtgtcccggtgtcggacccgaca-ctacacttgtaattacactaaatta 37203293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 422
Target Start/End: Original strand, 11596297 - 11596382
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcg------gacacaacaccgacacttgtaattacactaaatta 422  Q
    ||||||||||||| |||||||||||||||||||||||   |||||      ||||| ||||| ||||||||||||||||| |||||    
T  11596297 ctatgaagcacggacactcctcagattaggcgtgtcccgatgtcggacaatgacacgacacctacacttgtaattacactgaatta 11596382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 414
Target Start/End: Complemental strand, 24544088 - 24544019
Alignment:
Q  344 tatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacacaacaccgacacttgtaattaca 414  Q
    ||||||||| | ||||||||| |||||||| |||||  |||||||||||  ||||||||||||||||||||    
T  24544088 tatgaagcatgagcactcctcggattaggcatgtccatgtgtcggacac-gcaccgacacttgtaattaca 24544019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 392
Target Start/End: Complemental strand, 28084640 - 28084594
Alignment:
Q  346 tgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    |||||||||| |||||||| |||||||||||||| ||||||||||||    
T  28084640 tgaagcacggacactcctcggattaggcgtgtcccagtgtcggacac 28084594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 42640643 - 42640558
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggaca------caacaccgacacttgtaattacactaaatta 422  Q
    |||||||||||||  ||||||| ||||||||||||||| ||| ||||||      | ||||||||||||||||||||||| |||||    
T  42640643 ctatgaagcacggaaactcctcggattaggcgtgtcctggtgccggacacgtgtccgacaccgacacttgtaattacactgaatta 42640558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 343 - 392
Target Start/End: Complemental strand, 24343632 - 24343583
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    ||||||||||||| ||||||||||| |||||||||||  |||||||||||    
T  24343632 ctatgaagcacggacactcctcagaataggcgtgtcccggtgtcggacac 24343583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 343 - 391
Target Start/End: Original strand, 715545 - 715593
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggaca 391  Q
    ||||||||||||| |||||||| ||||||||||||||  ||||||||||    
T  715545 ctatgaagcacggacactcctcggattaggcgtgtccctgtgtcggaca 715593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 343 - 391
Target Start/End: Original strand, 752871 - 752919
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggaca 391  Q
    ||||||||||||| |||||||| ||||||||||||||  ||||||||||    
T  752871 ctatgaagcacggacactcctcggattaggcgtgtccctgtgtcggaca 752919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 344 - 392
Target Start/End: Original strand, 3947702 - 3947750
Alignment:
Q  344 tatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    |||||||||||| |||||||| ||||||| ||||||| |||||||||||    
T  3947702 tatgaagcacggacactcctcggattaggtgtgtcctggtgtcggacac 3947750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 344 - 392
Target Start/End: Original strand, 14465006 - 14465054
Alignment:
Q  344 tatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    |||||||||||| ||||||||||||||| ||||||| ||||||| ||||    
T  14465006 tatgaagcacggacactcctcagattagacgtgtcccagtgtcgaacac 14465054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 343 - 391
Target Start/End: Complemental strand, 16073513 - 16073465
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggaca 391  Q
    |||||||||| || |||||||| ||||||||||||| ||||||||||||    
T  16073513 ctatgaagcatggacactcctcggattaggcgtgtcttagtgtcggaca 16073465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 343 - 391
Target Start/End: Complemental strand, 29205587 - 29205539
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggaca 391  Q
    ||||||||||||  |||||||| |||||||||||||| |||||||||||    
T  29205587 ctatgaagcacgaacactcctcggattaggcgtgtcccagtgtcggaca 29205539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 344 - 392
Target Start/End: Complemental strand, 40965389 - 40965341
Alignment:
Q  344 tatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    |||||||||| | |||||||||||||||||||||| | |||||||||||    
T  40965389 tatgaagcaccgacactcctcagattaggcgtgtcttggtgtcggacac 40965341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 344 - 391
Target Start/End: Original strand, 5922532 - 5922579
Alignment:
Q  344 tatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggaca 391  Q
    |||||||||  | ||||||||||||||||||||||| |||||||||||    
T  5922532 tatgaagcagagacactcctcagattaggcgtgtcccagtgtcggaca 5922579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 342 - 389
Target Start/End: Original strand, 28964187 - 28964234
Alignment:
Q  342 actatgaagcacgggcactcctcagattaggcgtgtcctagtgtcgga 389  Q
    ||||||||||| || |||||||| |||||||||||||| |||||||||    
T  28964187 actatgaagcatggacactcctcggattaggcgtgtcccagtgtcgga 28964234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 422
Target Start/End: Original strand, 16303263 - 16303296
Alignment:
Q  389 acacaacaccgacacttgtaattacactaaatta 422  Q
    |||| |||||||||||||||||||||||||||||    
T  16303263 acacgacaccgacacttgtaattacactaaatta 16303296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 393
Target Start/End: Original strand, 17425348 - 17425397
Alignment:
Q  344 tatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacaca 393  Q
    |||||||||| | |||||||| ||||||||||||||| ||||| ||||||    
T  17425348 tatgaagcacagacactcctcggattaggcgtgtccttgtgtctgacaca 17425397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 392
Target Start/End: Complemental strand, 19482798 - 19482749
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    ||||||||||||  |||||||| ||||||| |||||| ||||||||||||    
T  19482798 ctatgaagcacgaacactcctcggattaggtgtgtcccagtgtcggacac 19482749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 343 - 391
Target Start/End: Original strand, 3064868 - 3064916
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggaca 391  Q
    ||||||||||||| |||||||| |||||||||||||  || ||||||||    
T  3064868 ctatgaagcacggacactcctcggattaggcgtgtctcagagtcggaca 3064916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 348 - 392
Target Start/End: Original strand, 3712458 - 3712502
Alignment:
Q  348 aagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    |||||||| ||||||||||||||| |||||||  |||||||||||    
T  3712458 aagcacggacactcctcagattagccgtgtcccggtgtcggacac 3712502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 343 - 379
Target Start/End: Original strand, 5775304 - 5775340
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcc 379  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  5775304 ctatgaagcacggacactcctcggattaggcgtgtcc 5775340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 394 - 422
Target Start/End: Original strand, 6485613 - 6485641
Alignment:
Q  394 acaccgacacttgtaattacactaaatta 422  Q
    |||||||||||||||||||||||||||||    
T  6485613 acaccgacacttgtaattacactaaatta 6485641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 343 - 391
Target Start/End: Complemental strand, 16184950 - 16184902
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggaca 391  Q
    |||||||||||   |||||||| |||||||||||||| |||||||||||    
T  16184950 ctatgaagcacaaacactcctcggattaggcgtgtcccagtgtcggaca 16184902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 343 - 375
Target Start/End: Complemental strand, 42015079 - 42015047
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgt 375  Q
    ||||||||||||| |||||||||||||||||||    
T  42015079 ctatgaagcacggtcactcctcagattaggcgt 42015047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 346 - 422
Target Start/End: Original strand, 9025448 - 9025524
Alignment:
Q  346 tgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacacaacaccgacacttgtaattacactaaatta 422  Q
    |||||||||| |||| ||| ||||||||||||||  ||||||||||| |||||||||| | |||||||||| |||||    
T  9025448 tgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacgacaccgacacatataattacactgaatta 9025524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 343 - 391
Target Start/End: Original strand, 10339054 - 10339102
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggaca 391  Q
    ||||||||||||| |||||||| |||||||||||||| |||||||||||    
T  10339054 ctatgaagcacggacactcctccgattaggcgtgtcccagtgtcggaca 10339102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 344 - 416
Target Start/End: Complemental strand, 31959268 - 31959194
Alignment:
Q  344 tatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacaca--acaccgacacttgtaattacact 416  Q
    |||||||||||| |||||||| ||||||| ||||||  ||||||||||||   | ||||||||||||||||||||    
T  31959268 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacatgtcgccgacacttgtaattacact 31959194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 9107299 - 9107349
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacaca 393  Q
    |||||||||||||||||||||| ||||||| ||||||  ||||||||||||    
T  9107299 ctatgaagcacgggcactcctcggattaggtgtgtcccggtgtcggacaca 9107349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 343 - 392
Target Start/End: Original strand, 8365448 - 8365497
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    |||||||||||||  ||||||| |||||||||||||| ||||||||||||    
T  8365448 ctatgaagcacggagactcctcggattaggcgtgtcccagtgtcggacac 8365497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 343 - 422
Target Start/End: Original strand, 8805524 - 8805602
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtccta-gtgtcggacacaacaccgacacttgtaattacactaaatta 422  Q
    ||||||||||||| |||||||| |||||||| ||||| | ||||| ||||| ||||||||||   ||||||||||||||||    
T  8805524 ctatgaagcacggacactcctcggattaggcatgtcccacgtgtctgacactacaccgacac--ataattacactaaatta 8805602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 343 - 422
Target Start/End: Original strand, 9911482 - 9911558
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacacaacaccgacacttgtaattacactaaatta 422  Q
    |||||||||| |  |||||||| ||||||||||||||| ||    ||||| ||||||||||||||||||||||| |||||    
T  9911482 ctatgaagcatgaacactcctcggattaggcgtgtcctggtt---gacacgacaccgacacttgtaattacactgaatta 9911558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 344 - 393
Target Start/End: Original strand, 17841530 - 17841579
Alignment:
Q  344 tatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacaca 393  Q
    |||||||||||| |||||||| |||||||||||||  |||||||||||||    
T  17841530 tatgaagcacggacactcctcggattaggcgtgtctcagtgtcggacaca 17841579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 343 - 379
Target Start/End: Original strand, 426478 - 426514
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcc 379  Q
    ||||||||||||| |||||||||||||||||||||||    
T  426478 ctatgaagcacggacactcctcagattaggcgtgtcc 426514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 343 - 391
Target Start/End: Complemental strand, 4878061 - 4878014
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggaca 391  Q
    ||||||||||||| |||||||| ||||||||||||||| ||||||||||    
T  4878061 ctatgaagcacggacactcctcggattaggcgtgtcct-gtgtcggaca 4878014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 7086904 - 7086824
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtccta-gtgtcggacacaacaccgacacttgtaattacactaaatta 422  Q
    |||||||||||||  ||||||| |||||||| ||||  | ||||| ||||| |||||||||| | ||||||||||||||||    
T  7086904 ctatgaagcacggaaactcctcggattaggcatgtctcacgtgtctgacactacaccgacacatataattacactaaatta 7086824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 7938219 - 7938145
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacacaacaccgacacttgtaattacactaaatta 422  Q
    ||||||||||||| |||||||| ||| |||||||||   |||||||     |||||||||||| ||||||||||||||||    
T  7938219 ctatgaagcacggacactcctcggatcaggcgtgtctcggtgtcgg-----acaccgacacttataattacactaaatta 7938145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 388 - 422
Target Start/End: Complemental strand, 9522954 - 9522920
Alignment:
Q  388 gacacaacaccgacacttgtaattacactaaatta 422  Q
    ||||||||||||||||||||||||||||| |||||    
T  9522954 gacacaacaccgacacttgtaattacactgaatta 9522920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 10294237 - 10294187
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacaca 393  Q
    ||||||||||| | |||||||||||||||  |||||||||| |||||||||    
T  10294237 ctatgaagcacagacactcctcagattagctgtgtcctagtttcggacaca 10294187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 388 - 422
Target Start/End: Original strand, 21395304 - 21395338
Alignment:
Q  388 gacacaacaccgacacttgtaattacactaaatta 422  Q
    ||||| |||||||||||||||||||||||||||||    
T  21395304 gacacgacaccgacacttgtaattacactaaatta 21395338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 391
Target Start/End: Original strand, 13360312 - 13360361
Alignment:
Q  342 actatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggaca 391  Q
    |||||||||||||| ||||| || |||||||||||||  |||||||||||    
T  13360312 actatgaagcacggacactcttcggattaggcgtgtctcagtgtcggaca 13360361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 392
Target Start/End: Original strand, 17327590 - 17327639
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    ||||||||||||| |||||||| ||||||||||||||  ||||| |||||    
T  17327590 ctatgaagcacggacactcctcggattaggcgtgtccctgtgtcagacac 17327639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 345 - 377
Target Start/End: Complemental strand, 5569866 - 5569834
Alignment:
Q  345 atgaagcacgggcactcctcagattaggcgtgt 377  Q
    ||||||||||| |||||||||||||||||||||    
T  5569866 atgaagcacggacactcctcagattaggcgtgt 5569834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 343 - 415
Target Start/End: Complemental strand, 9027286 - 9027214
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacacaacaccgacacttgtaattacac 415  Q
    |||||||||||   |||||||  |||||| |||||||  ||||||||||| |||||||||| | |||||||||    
T  9027286 ctatgaagcacaaacactccttggattagccgtgtcccggtgtcggacacgacaccgacacatataattacac 9027214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 343 - 379
Target Start/End: Original strand, 10770607 - 10770643
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcc 379  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  10770607 ctatgaagcacggacactcctcagattaggcatgtcc 10770643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 382 - 422
Target Start/End: Original strand, 10770664 - 10770704
Alignment:
Q  382 gtgtcggacacaacaccgacacttgtaattacactaaatta 422  Q
    ||||| ||||| ||||||||||||||||||||||| |||||    
T  10770664 gtgtctgacacgacaccgacacttgtaattacactgaatta 10770704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 357 - 393
Target Start/End: Original strand, 21044828 - 21044864
Alignment:
Q  357 cactcctcagattaggcgtgtcctagtgtcggacaca 393  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  21044828 cactccttagattaggcgtgtcccagtgtcggacaca 21044864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 357 - 393
Target Start/End: Original strand, 21068086 - 21068122
Alignment:
Q  357 cactcctcagattaggcgtgtcctagtgtcggacaca 393  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  21068086 cactccttagattaggcgtgtcccagtgtcggacaca 21068122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 343 - 391
Target Start/End: Original strand, 34894968 - 34895016
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggaca 391  Q
    ||||||||||||| ||||||||| |||||| ||||||  ||||||||||    
T  34894968 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 34895016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 19180659 - 19180559
Alignment:
Q  18 tttttcactgacccatttacaatc----tgcttaaccgatttattgtgtcacattggtggtgtatattgtttctttggaagggtttagtccaccgttttt 113  Q
    ||||||||||||||||||  ||||    |||||||| |||||||||||| |  ||| |||||||||| ||| || ||||||||||||||||||| |||||    
T  19180659 tttttcactgacccattttaaatcaatttgcttaactgatttattgtgttatgttgatggtgtatatggttactatggaagggtttagtccaccattttt 19180560  T
Q  114 a 114  Q
    |    
T  19180559 a 19180559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 8343086 - 8343001
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacaca------acaccgacacttgtaattacactaaatta 422  Q
    ||||||||||| | ||||| || ||||||||||||||  ||||||||||||      |||||||||||||||||||||||||||||    
T  8343086 ctatgaagcacagacactcttcggattaggcgtgtcccggtgtcggacacatgtacgacaccgacacttgtaattacactaaatta 8343001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 343 - 391
Target Start/End: Complemental strand, 18407838 - 18407790
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggaca 391  Q
    ||||||||||||| ||||||||  |||||||||||||||||||||||||    
T  18407838 ctatgaagcacggacactcctccaattaggcgtgtcctagtgtcggaca 18407790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 343 - 392
Target Start/End: Original strand, 36450694 - 36450743
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    ||||||||||| | |||||||| ||||||||||||||| |||||||||||    
T  36450694 ctatgaagcacagacactcctcggattaggcgtgtcctggtgtcggacac 36450743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 345 - 392
Target Start/End: Complemental strand, 44067644 - 44067597
Alignment:
Q  345 atgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    ||||||||||| ||||||||  |||||||||||||| |||||||||||    
T  44067644 atgaagcacggacactcctcgaattaggcgtgtcctggtgtcggacac 44067597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 388 - 422
Target Start/End: Original strand, 2572052 - 2572086
Alignment:
Q  388 gacacaacaccgacacttgtaattacactaaatta 422  Q
    ||||| |||||||||||||||||||||||||||||    
T  2572052 gacacgacaccgacacttgtaattacactaaatta 2572086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 22652106 - 22652056
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacaca 393  Q
    ||||||||||||| |||||||| |||||| |||||||  ||||||||||||    
T  22652106 ctatgaagcacggacactcctcggattagacgtgtcccggtgtcggacaca 22652056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 30067968 - 30068018
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacaca 393  Q
    ||||||||||||| ||||| || ||||||| |||||| |||||||||||||    
T  30067968 ctatgaagcacggacactcatcggattaggtgtgtcccagtgtcggacaca 30068018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 467
Target Start/End: Original strand, 4298955 - 4298996
Alignment:
Q  426 gtatctgtgtcgtgttcgtgttcgtatccgtgcttcataggt 467  Q
    ||||||||||||||| ||||| | ||||||||||||||||||    
T  4298955 gtatctgtgtcgtgtccgtgtccatatccgtgcttcataggt 4298996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 392
Target Start/End: Original strand, 12570438 - 12570487
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    |||| |||||||| || || |||||||||||||||||| |||||||||||    
T  12570438 ctataaagcacggacaatcttcagattaggcgtgtcctggtgtcggacac 12570487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 392
Target Start/End: Original strand, 12570664 - 12570713
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    |||| |||||||| || || |||||||||||||||||| |||||||||||    
T  12570664 ctataaagcacggacaatcttcagattaggcgtgtcctggtgtcggacac 12570713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 393
Target Start/End: Original strand, 29447040 - 29447089
Alignment:
Q  344 tatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacaca 393  Q
    |||||||||||| |||||||  ||||||||||||||| ||||| ||||||    
T  29447040 tatgaagcacggacactcctaggattaggcgtgtcctggtgtcagacaca 29447089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 392
Target Start/End: Original strand, 29510233 - 29510282
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    ||||||||||||| |||||||| ||||||| ||||||  |||||||||||    
T  29510233 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacac 29510282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 379
Target Start/End: Original strand, 37283754 - 37283791
Alignment:
Q  342 actatgaagcacgggcactcctcagattaggcgtgtcc 379  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  37283754 actatgaagcacgggcactcctcggattagacgtgtcc 37283791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 340 - 388
Target Start/End: Complemental strand, 17751778 - 17751730
Alignment:
Q  340 acactatgaagcacgggcactcctcagattaggcgtgtcctagtgtcgg 388  Q
    |||||||||||| ||| |||||||| ||||||||||||||  |||||||    
T  17751778 acactatgaagcgcggacactcctcggattaggcgtgtcccggtgtcgg 17751730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 340 - 388
Target Start/End: Complemental strand, 17760765 - 17760717
Alignment:
Q  340 acactatgaagcacgggcactcctcagattaggcgtgtcctagtgtcgg 388  Q
    |||||||||||| ||| |||||||| ||||||||||||||  |||||||    
T  17760765 acactatgaagcgcggacactcctcggattaggcgtgtcccggtgtcgg 17760717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 394 - 422
Target Start/End: Complemental strand, 20873126 - 20873098
Alignment:
Q  394 acaccgacacttgtaattacactaaatta 422  Q
    |||||||||||||||||||||||||||||    
T  20873126 acaccgacacttgtaattacactaaatta 20873098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 343 - 379
Target Start/End: Original strand, 26902104 - 26902140
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcc 379  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  26902104 ctatgaagcacggacactcctcagataaggcgtgtcc 26902140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 336 - 392
Target Start/End: Original strand, 34450954 - 34451010
Alignment:
Q  336 tgctacactatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    |||||||||||||||||||| |||||||  ||| ||||||||||  ||||| |||||    
T  34450954 tgctacactatgaagcacggacactccttggataaggcgtgtccccgtgtcagacac 34451010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 343 - 403
Target Start/End: Complemental strand, 2437030 - 2436970
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacacaacaccgacac 403  Q
    ||||||||||||  |||||||| ||||||||||||| | ||||||||||| ||||||||||    
T  2437030 ctatgaagcacgaacactcctcggattaggcgtgtcttggtgtcggacacgacaccgacac 2436970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 346 - 393
Target Start/End: Original strand, 39268541 - 39268588
Alignment:
Q  346 tgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacaca 393  Q
    |||||||||| |||||||| |||||||||||||| |||||||||||||    
T  39268541 tgaagcacggacactcctcggattaggcgtgtcccagtgtcggacaca 39268588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 392
Target Start/End: Complemental strand, 42893484 - 42893430
Alignment:
Q  338 ctacactatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    |||| |||||||||| || ||||||||| |||||||||||||| |||||||||||    
T  42893484 ctactctatgaagcatggacactcctcatattaggcgtgtcctggtgtcggacac 42893430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 343 - 392
Target Start/End: Original strand, 21576685 - 21576734
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    ||||||||||||| |||||||| |||||||||||||| |||||| |||||    
T  21576685 ctatgaagcacggacactcctcggattaggcgtgtcccagtgtcagacac 21576734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 343 - 392
Target Start/End: Original strand, 32766872 - 32766921
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    ||||||||||||| ||||||||||||||| ||| |||| |||||||||||    
T  32766872 ctatgaagcacggacactcctcagattagacgtatcctggtgtcggacac 32766921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 343 - 391
Target Start/End: Original strand, 19820328 - 19820376
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggaca 391  Q
    ||||||||||||| |||||||| ||||||||||||||  ||||||||||    
T  19820328 ctatgaagcacggacactcctctgattaggcgtgtcccggtgtcggaca 19820376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 342 - 422
Target Start/End: Original strand, 24906251 - 24906331
Alignment:
Q  342 actatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacacaacaccgacacttgtaattacactaaatta 422  Q
    |||||||||||||| ||||||||  ||||||||||||||| ||||     | | ||||||||||||||||||||| |||||    
T  24906251 actatgaagcacggacactcctcgaattaggcgtgtcctattgtcatgtccgataccgacacttgtaattacactgaatta 24906331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 15884096 - 15884017
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacacaacaccgacacttgtaattacactaaatta 422  Q
    ||||||| ||| | |||||||| |||||||||||| | |||||||    | ||||||||||||||||||||||| |||||    
T  15884096 ctatgaaacacagacactcctcggattaggcgtgttccagtgtcgtgtccgacaccgacacttgtaattacactgaatta 15884017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 392
Target Start/End: Complemental strand, 14873641 - 14873592
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    ||||||||||||| |||||||| ||||||||||||||  |||| ||||||    
T  14873641 ctatgaagcacggacactcctcggattaggcgtgtcccggtgttggacac 14873592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 379
Target Start/End: Complemental strand, 17123167 - 17123130
Alignment:
Q  342 actatgaagcacgggcactcctcagattaggcgtgtcc 379  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  17123167 actatgaagcacggacactcctcggattaggcgtgtcc 17123130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 392
Target Start/End: Complemental strand, 31084447 - 31084398
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    ||||||| ||||| |||||||| |||||||| ||||| ||||||||||||    
T  31084447 ctatgaaccacggacactcctcggattaggcatgtcccagtgtcggacac 31084398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 379
Target Start/End: Complemental strand, 35017163 - 35017126
Alignment:
Q  342 actatgaagcacgggcactcctcagattaggcgtgtcc 379  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  35017163 actatgaagcacggacactcctcggattaggcgtgtcc 35017126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 343 - 379
Target Start/End: Complemental strand, 10298669 - 10298633
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcc 379  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  10298669 ctatgaagcacggacactcctcggattaggcgtgtcc 10298633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 343 - 391
Target Start/End: Original strand, 19552476 - 19552524
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggaca 391  Q
    ||||||| ||||| |||||||| ||||||| |||||| |||||||||||    
T  19552476 ctatgaaacacggacactcctcggattaggtgtgtccaagtgtcggaca 19552524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 343 - 379
Target Start/End: Original strand, 22423764 - 22423800
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcc 379  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  22423764 ctatgaagcacggacactcctcggattaggcgtgtcc 22423800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 345 - 393
Target Start/End: Original strand, 23015926 - 23015974
Alignment:
Q  345 atgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacaca 393  Q
    ||||||| ||| |||||||| |||||||||||||| | |||||||||||    
T  23015926 atgaagctcggacactcctcggattaggcgtgtcccaatgtcggacaca 23015974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 394 - 422
Target Start/End: Complemental strand, 33178082 - 33178054
Alignment:
Q  394 acaccgacacttgtaattacactaaatta 422  Q
    |||||||||||||||||||||||||||||    
T  33178082 acaccgacacttgtaattacactaaatta 33178054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 342 - 378
Target Start/End: Complemental strand, 39698672 - 39698636
Alignment:
Q  342 actatgaagcacgggcactcctcagattaggcgtgtc 378  Q
    |||||||||||||| |||||||| |||||||||||||    
T  39698672 actatgaagcacggacactcctcggattaggcgtgtc 39698636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 11610628 - 11610550
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacacaacaccgacacttgtaattacactaaatta 422  Q
    ||||||||||||| |||||||||||||||||||||||   |||||||||| ||   ||||||||||| |||||| |||||    
T  11610628 ctatgaagcacggacactcctcagattaggcgtgtcccgatgtcggacacgac-ttgacacttgtaactacactgaatta 11610550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 342 - 393
Target Start/End: Original strand, 34185051 - 34185102
Alignment:
Q  342 actatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacaca 393  Q
    |||||||||||||| |||||||| ||||||||||||||  ||||||||||||    
T  34185051 actatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacaca 34185102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 343 - 392
Target Start/End: Original strand, 41961579 - 41961628
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    ||||||||||||| |||| ||| |||||||||||||| ||||||||||||    
T  41961579 ctatgaagcacggacacttctcggattaggcgtgtcccagtgtcggacac 41961628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 345 - 392
Target Start/End: Original strand, 24204983 - 24205030
Alignment:
Q  345 atgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    ||||||||||| ||||||||  |||||||||||||| |||||||||||    
T  24204983 atgaagcacggacactcctcgaattaggcgtgtcctggtgtcggacac 24205030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 344 - 416
Target Start/End: Complemental strand, 25211648 - 25211574
Alignment:
Q  344 tatgaagcacgggcactcctcagattaggcgtgtcctagtgtc--ggacacaacaccgacacttgtaattacact 416  Q
    ||||||||||   |||| ||||||||||||||||||| |||||  |||||| |||||||||| | ||||||||||    
T  25211648 tatgaagcacaaacacttctcagattaggcgtgtcctggtgtcggggacacgacaccgacacatataattacact 25211574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 345 - 392
Target Start/End: Complemental strand, 25775624 - 25775577
Alignment:
Q  345 atgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    ||||||||||  |||||||| ||||||||||||||| |||||||||||    
T  25775624 atgaagcacgaacactcctcggattaggcgtgtcctggtgtcggacac 25775577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 343 - 422
Target Start/End: Original strand, 4990912 - 4990997
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcgg------acacaacaccgacacttgtaattacactaaatta 422  Q
    ||||||||||||| |||||||| ||||||||||||||  ||||| |      |||| || |||||||||||||||||||| |||||    
T  4990912 ctatgaagcacggacactcctcggattaggcgtgtccacgtgtctgataccaacacgacgccgacacttgtaattacactgaatta 4990997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 393
Target Start/End: Complemental strand, 1389956 - 1389907
Alignment:
Q  344 tatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacaca 393  Q
    |||||||||||| |||||||  |||||||| |||||| ||||||||||||    
T  1389956 tatgaagcacggacactccttggattaggcatgtcctggtgtcggacaca 1389907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 392
Target Start/End: Complemental strand, 25074914 - 25074865
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    ||||||||||||  |||||||| ||||||| |||||| ||||||||||||    
T  25074914 ctatgaagcacgaacactcctcggattaggtgtgtcccagtgtcggacac 25074865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 392
Target Start/End: Complemental strand, 27505370 - 27505321
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    ||||||||||||| |||||||| |||||||| |||||  |||||||||||    
T  27505370 ctatgaagcacggacactcctcggattaggcatgtcccggtgtcggacac 27505321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 392
Target Start/End: Complemental strand, 40052431 - 40052382
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    ||||||||||||  |||||||| ||||||||||||||  |||||||||||    
T  40052431 ctatgaagcacgaacactcctcggattaggcgtgtcccggtgtcggacac 40052382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 392
Target Start/End: Complemental strand, 55401194 - 55401145
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    ||||||||||||| |||||||| |||||||||||||   |||||||||||    
T  55401194 ctatgaagcacggacactcctcggattaggcgtgtctcggtgtcggacac 55401145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 394 - 422
Target Start/End: Complemental strand, 1509596 - 1509568
Alignment:
Q  394 acaccgacacttgtaattacactaaatta 422  Q
    |||||||||||||||||||||||||||||    
T  1509596 acaccgacacttgtaattacactaaatta 1509568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 343 - 379
Target Start/End: Complemental strand, 20503584 - 20503548
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcc 379  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  20503584 ctatgaagcacggacactcctcggattaggcgtgtcc 20503548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 382 - 422
Target Start/End: Complemental strand, 27505315 - 27505275
Alignment:
Q  382 gtgtcggacacaacaccgacacttgtaattacactaaatta 422  Q
    ||||| ||||| ||||||||||||||||||||||| |||||    
T  27505315 gtgtcagacacgacaccgacacttgtaattacacttaatta 27505275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 343 - 391
Target Start/End: Original strand, 40993275 - 40993323
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggaca 391  Q
    |||||||||| || |||||||| ||||||||||||||  ||||||||||    
T  40993275 ctatgaagcatggacactcctcggattaggcgtgtcccggtgtcggaca 40993323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 394 - 422
Target Start/End: Complemental strand, 55401132 - 55401104
Alignment:
Q  394 acaccgacacttgtaattacactaaatta 422  Q
    |||||||||||||||||||||||||||||    
T  55401132 acaccgacacttgtaattacactaaatta 55401104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0793 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 343 - 391
Target Start/End: Original strand, 4821 - 4869
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggaca 391  Q
    ||||||||||||| |||||||| ||||||||||||||  ||||||||||    
T  4821 ctatgaagcacggacactcctcggattaggcgtgtccctgtgtcggaca 4869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 343 - 386
Target Start/End: Complemental strand, 3427 - 3384
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtc 386  Q
    ||||||||||||| |||||||| |||||||||||||| ||||||    
T  3427 ctatgaagcacggacactcctcggattaggcgtgtcccagtgtc 3384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 24155 - 24106
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacaca 393  Q
    ||||||||||||| ||||| || |||||||||||||| |||||||||||||    
T  24155 ctatgaagcacggacactcatcggattaggcgtgtcc-agtgtcggacaca 24106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 392
Target Start/End: Original strand, 8564 - 8613
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    ||||||||||||| ||||||||  ||||||||||| | ||||||||||||    
T  8564 ctatgaagcacggacactcctcgaattaggcgtgtaccagtgtcggacac 8613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 392
Target Start/End: Complemental strand, 8720 - 8671
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    ||||||||||||| |||||||  |||||||||| ||| ||||||||||||    
T  8720 ctatgaagcacggacactccttggattaggcgtatcccagtgtcggacac 8671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 392
Target Start/End: Complemental strand, 8917 - 8868
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    |||||||||||||  |||||||||||||||||||||   |||||||||||    
T  8917 ctatgaagcacggagactcctcagattaggcgtgtctcggtgtcggacac 8868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 392
Target Start/End: Complemental strand, 241724 - 241675
Alignment:
Q  343 ctatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    ||||||||||||| |||| ||| ||||||||||||||  |||||||||||    
T  241724 ctatgaagcacggacacttctcggattaggcgtgtcccggtgtcggacac 241675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 344 - 392
Target Start/End: Original strand, 403 - 451
Alignment:
Q  344 tatgaagcacgggcactcctcagattaggcgtgtcctagtgtcggacac 392  Q
    |||||||||||| |||||||| ||||||| ||||||  |||||||||||    
T  403 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacac 451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 429 - 465
Target Start/End: Complemental strand, 23407 - 23371
Alignment:
Q  429 tctgtgtcgtgttcgtgttcgtatccgtgcttcatag 465  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  23407 tctgtgtcgtgtccgtgtccgtatccgtgcttcatag 23371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 342 - 378
Target Start/End: Complemental strand, 46777 - 46741
Alignment:
Q  342 actatgaagcacgggcactcctcagattaggcgtgtc 378  Q
    |||||||||||||| |||||||| |||||||||||||    
T  46777 actatgaagcacggacactcctcggattaggcgtgtc 46741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 394 - 422
Target Start/End: Original strand, 17751 - 17779
Alignment:
Q  394 acaccgacacttgtaattacactaaatta 422  Q
    |||||||||||||||||||||||||||||    
T  17751 acaccgacacttgtaattacactaaatta 17779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University