View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5576-Insertion-5 (Length: 593)

Name: NF5576-Insertion-5
Description: NF5576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5576-Insertion-5
NF5576-Insertion-5
[»] chr4 (17 HSPs)
chr4 (8-593)||(6627039-6627644)
chr4 (413-556)||(6550689-6550832)
chr4 (419-569)||(6593414-6593564)
chr4 (419-557)||(6522873-6523011)
chr4 (419-564)||(6792054-6792199)
chr4 (419-564)||(6646733-6646878)
chr4 (432-564)||(6502557-6502689)
chr4 (433-564)||(6503808-6503939)
chr4 (398-563)||(6811488-6811653)
chr4 (414-562)||(6832025-6832173)
chr4 (433-557)||(6748552-6748676)
chr4 (430-557)||(6769226-6769353)
chr4 (433-522)||(6738198-6738287)
chr4 (433-555)||(6541725-6541847)
chr4 (52-205)||(6646329-6646485)
chr4 (40-129)||(6593863-6593952)
chr4 (36-68)||(6791639-6791671)
[»] scaffold0729 (2 HSPs)
scaffold0729 (419-564)||(6430-6575)
scaffold0729 (36-68)||(6958-6990)
[»] chr6 (2 HSPs)
chr6 (471-558)||(5423595-5423682)
chr6 (479-533)||(5104970-5105024)


Alignment Details
Target: chr4 (Bit Score: 520; Significance: 0; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 8 - 593
Target Start/End: Complemental strand, 6627644 - 6627039
Alignment:
8 gttgatctctcgttcggaagttgggaaagaggtatgtttggaggagagacttttcatgattgcgtggataaaatcttgatgaagaaaacctctaaagagg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
6627644 gttgatctctcgttcggaagttgggaaagaggtatgtttggaggagagactttgcatgattgcgtggataaaatcttgatgaagaaaacctttaaagagg 6627545  T
108 aagataagttcatgacttgggtggcatcaatcagcaaagctaccatatatacgggacaaagtgatctcgaagacaggtaattttaaagttgaaacttgat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
6627544 aagataagttcatgacttgggtggcatcaatcagcaaagctaccatatatacgggacaaagtgatctcgaagacaggtaattttaaagttgaaacttgat 6627445  T
208 tg-------------------ctccatctttatggcttttttaatttacatgtctcaccttatt-atttcctcctttctctccagctatgcacgtgttgg 287  Q
    ||                   ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
6627444 tgatatgaaattataatattactccatctttatggcttttttaatttacatgtctcaccttatttatttcctcctttctctccagctatgcacgtgttgg 6627345  T
288 acaaatctaatcttctcttattcatatattatacaggaacagtagtatatatattgacgatgtagtcgaatgtgttactaatgtgctacgccactggaaa 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
6627344 acaaatctaatcttctcttattcatatattatacaggaacagtagtatatatattgacgacgtagtcgaatgtgttactaatgtgctacgccactggaaa 6627245  T
388 gacttctcccgtgctttctgtccagtgagcataaaatctggcgtgcaagatgtgattcaactattgaaacaatcaaactctcctcttctaatagggatat 487  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
6627244 gacttctcccgtgctttctgtccagtgagcataaaatctggtgtgcaagatgtgattcaactattgaaacaatcaaactctcctcttctaatagggatat 6627145  T
488 gggggatgggagggattggtaaatcaaccattgcccaagctatttatgatcaagttggtccctattttgaacacaagagtttgctaaaaaacgtcaggac 587  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
6627144 gggggatgggagggattggtaaatcaaccattgcccaagctatttatgatcaagttggtccctattttgaacacaagagtttgctaaaaaacgtcaggac 6627045  T
588 attttg 593  Q
    ||||||    
6627044 attttg 6627039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 413 - 556
Target Start/End: Complemental strand, 6550832 - 6550689
Alignment:
413 tgagcataaaatctggcgtgcaagatgtgattcaactattgaaacaatcaaactctcctcttctaatagggatatgggggatgggagggattggtaaatc 512  Q
    |||||||||| ||| | ||||||||||||||||||||||||||||||||||| |||||||| || |||||||| |||||||||| ||||||||||||| |    
6550832 tgagcataaattctcgtgtgcaagatgtgattcaactattgaaacaatcaaaatctcctctacttatagggatttgggggatggcagggattggtaaaac 6550733  T
513 aaccattgcccaagctatttatgatcaagttggtccctattttg 556  Q
    ||||||||||||||| |||||| ||||| |||||||||||||||    
6550732 aaccattgcccaagccatttatcatcaaattggtccctattttg 6550689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 419 - 569
Target Start/End: Complemental strand, 6593564 - 6593414
Alignment:
419 taaaatctggcgtgcaagatgtgattcaactattgaaacaatcaaactctcctcttctaatagggatatgggggatgggagggattggtaaatcaaccat 518  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||   ||||||  ||||||||||||||||||||  |||||||||||||||||||||    
6593564 taaaatctggtgtgcaagacgtgattcaactattgaaacaatcaaaaagtcctctcataatagggatatgggggatgacagggattggtaaatcaaccat 6593465  T
519 tgcccaagctatttatgatcaagttggtccctattttgaacacaagagttt 569  Q
    ||||||||| ||||| |||||| ||||||  ||||||||||||||||||||    
6593464 tgcccaagccatttacgatcaaattggtctttattttgaacacaagagttt 6593414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 419 - 557
Target Start/End: Complemental strand, 6523011 - 6522873
Alignment:
419 taaaatctggcgtgcaagatgtgattcaactattgaaacaatcaaactctcctcttctaatagggatatgggggatgggagggattggtaaatcaaccat 518  Q
    |||||||||| | ||| ||||||||||||||||||||||||||||| ||||||||  ||||||| ||||||||||||| |||||||||||||||||||||    
6523011 taaaatctggtgcgcatgatgtgattcaactattgaaacaatcaaaatctcctctcgtaataggcatatgggggatggtagggattggtaaatcaaccat 6522912  T
519 tgcccaagctatttatgatcaagttggtccctattttga 557  Q
    |||| | || |||||||||||||||||||| ||||||||    
6522911 tgccaaggccatttatgatcaagttggtccttattttga 6522873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 419 - 564
Target Start/End: Original strand, 6792054 - 6792199
Alignment:
419 taaaatctggcgtgcaagatgtgattcaactattgaaacaatcaaactctcctcttctaatagggatatgggggatgggagggattggtaaatcaaccat 518  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||   |||| | ||| |||||||||||||||||  |||||||||||||||||||||    
6792054 taaaatctggtgtgcaagatgtgattcaactattgaaacgatcaaaaagtcctatcctactagggatatgggggatgacagggattggtaaatcaaccat 6792153  T
519 tgcccaagctatttatgatcaagttggtccctattttgaacacaag 564  Q
    |||| |||| |||||||||||| ||||||  |||||||| ||||||    
6792154 tgccaaagccatttatgatcaaattggtctttattttgagcacaag 6792199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 419 - 564
Target Start/End: Original strand, 6646733 - 6646878
Alignment:
419 taaaatctggcgtgcaagatgtgattcaactattgaaacaatcaaactctcctcttctaatagggatatgggggatgggagggattggtaaatcaaccat 518  Q
    |||||||||| ||||||||||||||||| || |||||||||||||    |||||| |||||||||||||||||||||| |||||| ||||||||||||||    
6646733 taaaatctggtgtgcaagatgtgattcacctgttgaaacaatcaagaagtcctctcctaatagggatatgggggatggcagggatcggtaaatcaaccat 6646832  T
519 tgcccaagctatttatgatcaagttggtccctattttgaacacaag 564  Q
    |||| |||| |||||| ||||  ||||||| |||||||| ||||||    
6646833 tgccgaagccatttataatcagattggtccttattttgagcacaag 6646878  T

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Target: chr4; HSP #7
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 432 - 564
Target Start/End: Complemental strand, 6502689 - 6502557
Alignment:
432 gcaagatgtgattcaactattgaaacaatcaaactctcctcttctaatagggatatgggggatgggagggattggtaaatcaaccattgcccaagctatt 531  Q
    ||||||||||||||||||||||||||||||||  |||||||| ||  ||||||| |||||||||  ||||||| |||||||||||||||||||||| |||    
6502689 gcaagatgtgattcaactattgaaacaatcaagatctcctctcctgctagggatgtgggggatgtcagggattagtaaatcaaccattgcccaagccatt 6502590  T
532 tatgatcaagttggtccctattttgaacacaag 564  Q
    | | ||||  |||||||||||||||| ||||||    
6502589 tttaatcagattggtccctattttgagcacaag 6502557  T

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Target: chr4; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 433 - 564
Target Start/End: Complemental strand, 6503939 - 6503808
Alignment:
433 caagatgtgattcaactattgaaacaatcaaactctcctcttctaatagggatatgggggatgggagggattggtaaatcaaccattgcccaagctattt 532  Q
    |||||||||||||||||||||||||||||||| |||||||| ||  | |||||||||||||||  ||||||||||||||||||||||||| |||| ||||    
6503939 caagatgtgattcaactattgaaacaatcaaaatctcctctcctgctggggatatgggggatgacagggattggtaaatcaaccattgccgaagccattt 6503840  T
533 atgatcaagttggtccctattttgaacacaag 564  Q
    || ||||  ||||||||| |||| | ||||||    
6503839 ataatcagattggtcccttttttaagcacaag 6503808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 398 - 563
Target Start/End: Original strand, 6811488 - 6811653
Alignment:
398 gtgctttctgtccagtgagcataaaatctggcgtgcaagatgtgattcaactattgaaacaatcaaactctcctcttctaatagggatatgggggatggg 497  Q
    ||||||||| | ||| |||  |||||||| |  |||||||||||||||||| ||||||||||||||| | |||||| ||| |||||||||||||||||      
6811488 gtgctttctatacagagagtctaaaatctagtttgcaagatgtgattcaacaattgaaacaatcaaaatgtcctctcctactagggatatgggggatgac 6811587  T
498 agggattggtaaatcaaccattgcccaagctatttatgatcaagttggtccctattttgaacacaa 563  Q
    |||||||||||||||| |||||||| | || |||||||||||  || |||| ||||||||| ||||    
6811588 agggattggtaaatcagccattgccgaggccatttatgatcagattagtccttattttgaagacaa 6811653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 414 - 562
Target Start/End: Original strand, 6832025 - 6832173
Alignment:
414 gagcataaaatctggcgtgcaagatgtgattcaactattgaaacaatcaaactctcctcttctaatagggatatgggggatgggagggattggtaaatca 513  Q
    ||||||||| || || | ||||||||||||||||||||||||||| ||||| ||||||||  || |||||||||||||||||  ||||||||||||||||    
6832025 gagcataaattcaggggcgcaagatgtgattcaactattgaaacagtcaaaatctcctctcatactagggatatgggggatgccagggattggtaaatca 6832124  T
514 accattgcccaagctatttatgatcaagttggtccctattttgaacaca 562  Q
    | ||||| ||| || || | | ||||| |||||||||||||||| ||||    
6832125 agcattgtccatgccatatgtaatcaaattggtccctattttgagcaca 6832173  T

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Target: chr4; HSP #11
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 433 - 557
Target Start/End: Original strand, 6748552 - 6748676
Alignment:
433 caagatgtgattcaactattgaaacaatcaaactctcctcttctaatagggatatgggggatgggagggattggtaaatcaaccattgcccaagctattt 532  Q
    |||||||||||||||||||| |||||||| || || ||||| ||| | |||||||||||||||| |||| ||||||||||| | |||||  |||| ||||    
6748552 caagatgtgattcaactattaaaacaatcgaaatcccctctcctactcgggatatgggggatggcaggggttggtaaatcagctattgctaaagccattt 6748651  T
533 atgatcaagttggtccctattttga 557  Q
    |||||||| ||||||||||||||||    
6748652 atgatcaaattggtccctattttga 6748676  T

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Target: chr4; HSP #12
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 430 - 557
Target Start/End: Original strand, 6769226 - 6769353
Alignment:
430 gtgcaagatgtgattcaactattgaaacaatcaaactctcctcttctaatagggatatgggggatgggagggattggtaaatcaaccattgcccaagcta 529  Q
    |||||||||||||||||| |||||||||||||||| |||||| | ||||| ||||| |||||||||  ||||||||||||| | |||||||||||| | |    
6769226 gtgcaagatgtgattcaattattgaaacaatcaaaatctcctttcctaattgggatttgggggatgacagggattggtaaaactaccattgcccaatcca 6769325  T
530 tttatgatcaagttggtccctattttga 557  Q
    ||| | ||||| || |||||||||||||    
6769326 tttttaatcaaattagtccctattttga 6769353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 433 - 522
Target Start/End: Original strand, 6738198 - 6738287
Alignment:
433 caagatgtgattcaactattgaaacaatcaaactctcctcttctaatagggatatgggggatgggagggattggtaaatcaaccattgcc 522  Q
    |||||||||||||||||||||||||||||||| ||| |||| ||  |||||||||||||||||  |||||||||||||||||||||||||    
6738198 caagatgtgattcaactattgaaacaatcaaaatcttctctcctgctagggatatgggggatgacagggattggtaaatcaaccattgcc 6738287  T

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Target: chr4; HSP #14
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 433 - 555
Target Start/End: Complemental strand, 6541847 - 6541725
Alignment:
433 caagatgtgattcaactattgaaacaatcaaactctcctcttctaatagggatatgggggatgggagggattggtaaatcaaccattgcccaagctattt 532  Q
    |||||||||||||||||||||||||||||||| | ||||||| || |||||||||||||||||  ||||||||| ||||||||||| ||| | |  ||||    
6541847 caagatgtgattcaactattgaaacaatcaaaatgtcctcttttagtagggatatgggggatgacagggattggcaaatcaaccatcgccaatgtcattt 6541748  T
533 atgatcaagttggtccctatttt 555  Q
    || || || ||||||||| ||||    
6541747 atcataaatttggtccctttttt 6541725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 52 - 205
Target Start/End: Original strand, 6646329 - 6646485
Alignment:
52 agagacttttcatgattgcgtggataaaatcttgatgaagaaaac---ctctaaagaggaagataagttcatgacttgggtggcatcaatcagcaaagct 148  Q
    |||||||||||||||||  ||||||| ||||| ||| ||| ||||   |||  ||||| |||||||||| |||| |||||||||| |  |||  ||||||    
6646329 agagacttttcatgattttgtggatagaatctggataaaggaaacaacctccgaagagaaagataagtttatgagttgggtggcagccgtcacgaaagct 6646428  T
149 accatatatacgggacaaagtgatctcgaagacaggtaattttaaagttgaaacttg 205  Q
    |||| |||| | |||  || |||| |||  ||||||| |||||||||||||||||||    
6646429 accacatattcaggagtaattgatttcgcggacaggtgattttaaagttgaaacttg 6646485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 6593952 - 6593863
Alignment:
40 tatgtttggaggagagacttttcatgattgcgtggataaaatcttgatgaagaaaacctctaaagaggaagataagttcatgacttgggt 129  Q
    ||||||||||||||| |||||||||||||   |||||| ||| |  ||| || ||| ||||||||| ||||| ||| ||||||| |||||    
6593952 tatgtttggaggagacacttttcatgattttctggatagaatatcaatggaggaaatctctaaagaagaagacaagctcatgacctgggt 6593863  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 6791639 - 6791671
Alignment:
36 gaggtatgtttggaggagagacttttcatgatt 68  Q
    ||||||||||||||||||| |||||||||||||    
6791639 gaggtatgtttggaggagacacttttcatgatt 6791671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0729 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: scaffold0729
Description:

Target: scaffold0729; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 419 - 564
Target Start/End: Complemental strand, 6575 - 6430
Alignment:
419 taaaatctggcgtgcaagatgtgattcaactattgaaacaatcaaactctcctcttctaatagggatatgggggatgggagggattggtaaatcaaccat 518  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||   |||| | ||| |||||||||||||||||  |||||||||||||||||||||    
6575 taaaatctggtgtgcaagatgtgattcaactattgaaacgatcaaaaagtcctatcctactagggatatgggggatgacagggattggtaaatcaaccat 6476  T
519 tgcccaagctatttatgatcaagttggtccctattttgaacacaag 564  Q
    |||| |||| |||||||||||| ||||||  |||||||| ||||||    
6475 tgccaaagccatttatgatcaaattggtctttattttgagcacaag 6430  T

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Target: scaffold0729; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 6990 - 6958
Alignment:
36 gaggtatgtttggaggagagacttttcatgatt 68  Q
    ||||||||||||||||||| |||||||||||||    
6990 gaggtatgtttggaggagacacttttcatgatt 6958  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 471 - 558
Target Start/End: Original strand, 5423595 - 5423682
Alignment:
471 tcttctaatagggatatgggggatgggagggattggtaaatcaaccattgcccaagctatttatgatcaagttggtccctattttgaa 558  Q
    ||||||| ||||||| ||||| ||||| ||  |||||||| ||||||||||| ||||||||||  || || |||||| | ||||||||    
5423595 tcttctactagggatgtggggtatggggggagttggtaaaacaaccattgccaaagctatttacaataaaattggtcgcaattttgaa 5423682  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 479 - 533
Target Start/End: Complemental strand, 5105024 - 5104970
Alignment:
479 tagggatatgggggatgggagggattggtaaatcaaccattgcccaagctattta 533  Q
    ||||||| ||||| ||||||||  |||||||| ||||||||||| ||||||||||    
5105024 tagggatgtggggtatgggaggagttggtaaaacaaccattgccaaagctattta 5104970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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