View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5576-Insertion-6 (Length: 445)
Name: NF5576-Insertion-6
Description: NF5576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5576-Insertion-6 |
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Alignment Details
Target: chr6 (Bit Score: 367; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 8 - 442
Target Start/End: Original strand, 33223346 - 33223781
Alignment:
| Q |
8 |
attattgccattaatcacaccttgattgttaacaatagatcctccaatttgcatatgcaattgaagatcgtttctttcttcatcatcattctcagtctcg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33223346 |
attattgccattaatcacaccttgattgttaacaatagatcctccaatttgcatatgcaattgaagatcgtttctttcttcatcatcattctcagtctcg |
33223445 |
T |
|
| Q |
108 |
gtctcggattcaatctcaatcaattgtctgttctcataatagtgctgccttctttgagttacagcaccactatcagggcatgccttccaattccaaatcc |
207 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33223446 |
gtatcggattcaatctcaatcaattgtctgttctcataatagtgctgccttctttgagttacagcaccactatcagggcatgccttccaattccaaatcc |
33223545 |
T |
|
| Q |
208 |
ttgttgtagatacttgttgaaacatttgaagcaatgtcatagaagggtgttcaaaaggacccttcattgaaacatccaaaccattattgtttaacacagt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33223546 |
ttgttgtagatacttgttgaaacatttgaagcaatgtcatagaagggtgttcaaaaggacccttcattgaaacatccaaaccattattgtttaatacagt |
33223645 |
T |
|
| Q |
308 |
aataactacttccgttgaaagccagacatcaacnnnnnnnngaaaaaatcccggcatcattat-nnnnnnncaatctctacaagtagcataatagtgtgc |
406 |
Q |
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||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
33223646 |
aataactacttccgttgaaagcccgacatcaacttttttttgaaaaaatcccggcatcattataaaaaaaacaatctgtacaagtagcataatagtgtgc |
33223745 |
T |
|
| Q |
407 |
tactgtcactgcaccagacttttcaactcctctctt |
442 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
33223746 |
tactgtcactgcaccagacttttcaactcctctctt |
33223781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 97 - 284
Target Start/End: Original strand, 33226350 - 33226543
Alignment:
| Q |
97 |
tctcagtctcggtctcggattcaatctcaatcaattgtctgttctcataatagtgctgccttctttgagttacagc-accactatcagggcatgccttcc |
195 |
Q |
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|||||||||||||||| | ||||||||||| || ||||||||||||| |||||||||||||||||| ||||||| | ||||||||||||||||||||||| |
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| T |
33226350 |
tctcagtctcggtctcaggttcaatctcaaccagttgtctgttctcagaatagtgctgccttctttcagttacaaccaccactatcagggcatgccttcc |
33226449 |
T |
|
| Q |
196 |
aattccaaatccttgttgtagatacttgttgaaacatttgaagcaa-----tgtcatagaagggtgttcaaaaggacccttcattgaaacatcc |
284 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||| ||||||||||||||||||||||| |
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| T |
33226450 |
acttccaaatccttgttgtagatacttgttgaaacatttgaagcaatttcttttcttagaagggtgttcagaaggacccttcattgaaacatcc |
33226543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 186 - 292
Target Start/End: Complemental strand, 33246026 - 33245920
Alignment:
| Q |
186 |
catgccttccaattccaaatccttgttgtagatacttgttgaaacatttgaagcaatgtcatagaagggtgttcaaaaggacccttcattgaaacatcca |
285 |
Q |
| |
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|||||| |||| |||||||||| |||| |||||||||||| |||||||||||| ||| || ||||||||||||| ||||| |||||||||||||||||| |
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| T |
33246026 |
catgccgtccacttccaaatccatgttctagatacttgttcaaacatttgaaggaataccaaagaagggtgttcataaggatccttcattgaaacatcca |
33245927 |
T |
|
| Q |
286 |
aaccatt |
292 |
Q |
| |
|
|| |||| |
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|
| T |
33245926 |
aatcatt |
33245920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 391 - 445
Target Start/End: Original strand, 33226664 - 33226718
Alignment:
| Q |
391 |
tagcataatagtgtgctactgtcactgcaccagacttttcaactcctctctttct |
445 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
33226664 |
tagcataatagtgtgctactctcactgcaccagacttttcaactcctctctttct |
33226718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 320
Target Start/End: Original strand, 33226558 - 33226593
Alignment:
| Q |
285 |
aaaccattattgtttaacacagtaataactacttcc |
320 |
Q |
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|||||||||||||||| ||||||||||||||||||| |
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|
| T |
33226558 |
aaaccattattgtttaccacagtaataactacttcc |
33226593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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