View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5576-Insertion-8 (Length: 326)
Name: NF5576-Insertion-8
Description: NF5576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5576-Insertion-8 |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold0136 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 8 - 326
Target Start/End: Original strand, 50750081 - 50750404
Alignment:
| Q |
8 |
agatctagagcagatgttgtgtacactgc-----ttacatttttgtagttatagttaaagccatgcactgagcatctcattccaaatatcaggcacacca |
102 |
Q |
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| T |
50750081 |
agatctagagcagatgttgtgtacactgcactgcttccatttttgtagttatagttaaagccatgcactgagcatctcattccaaatatcaggcacacca |
50750180 |
T |
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| Q |
103 |
gggaggcaccaatggctgcaatcagaggactgaccattaccttgtttctgcctctcttcttcacttattgccttactatacactgaaggatgtccatctc |
202 |
Q |
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| T |
50750181 |
gggaggcaccaatggctgcaatcagaggactgaccattaccttgtttctgcctctctttttcacttattgccttactatacactgaaggatgtccatctc |
50750280 |
T |
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| Q |
203 |
ttctaaaagcagtcattgttgtaatatcttgtagatatactggaaatctcattctcttcagcactccttttagcactaccagtggtcctggaacatgtaa |
302 |
Q |
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| T |
50750281 |
ttctaaaagcagtcattgttgtaatatcttgtagatatactggaaatctcattctcttcagcactccttttagcactaccagtggtcctggaacatgtaa |
50750380 |
T |
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| Q |
303 |
gtggctgaaatattttacaggttg |
326 |
Q |
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| T |
50750381 |
gtggctgaaatattttacaggttg |
50750404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 75 - 271
Target Start/End: Original strand, 19411830 - 19412020
Alignment:
| Q |
75 |
catctcattccaaatatcaggcacaccagggaggcaccaatggctgcaatcagaggactgaccattaccttgtttctgcctctcttcttcacttattgcc |
174 |
Q |
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| T |
19411830 |
catctcattccaaatatcaggcacaccagggaggcaccaatgactgcaatcagaggaatggcccattctttgtttct------catcttggctggttgcc |
19411923 |
T |
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| Q |
175 |
ttactatacactgaaggatgtccatctcttctaaaagcagtcattgttgtaatatcttgtagatatactggaaatctcattctcttcagcactcctt |
271 |
Q |
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| T |
19411924 |
ttcctatacactgaaggatgtccatctctgcgtaaggcagtcattgtcgtaatatcttgcaggtataccggaaacctcattttcttcagcactcctt |
19412020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 4075257 - 4075304
Alignment:
| Q |
78 |
ctcattccaaatatcaggcacaccagggaggcaccaatggctgcaatc |
125 |
Q |
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| T |
4075257 |
ctcattccaagtatcaggcacaccagggagacaccaatgtatgcaatc |
4075304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0136 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0136
Description:
Target: scaffold0136; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 4423 - 4469
Alignment:
| Q |
76 |
atctcattccaaatatcaggcacaccagggaggcaccaatggctgca |
122 |
Q |
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| T |
4423 |
atctcattccatgtatcaggaacgccagggaggcaccaatggctgca |
4469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 125
Target Start/End: Complemental strand, 39085650 - 39085604
Alignment:
| Q |
79 |
tcattccaaatatcaggcacaccagggaggcaccaatggctgcaatc |
125 |
Q |
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| T |
39085650 |
tcattccacatatcaggcactccaggtagacaccaatggctgcaatc |
39085604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 126
Target Start/End: Complemental strand, 15113399 - 15113354
Alignment:
| Q |
81 |
attccaaatatcaggcacaccagggaggcaccaatggctgcaatca |
126 |
Q |
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| T |
15113399 |
attccaagtatcaggaacaccaggcagacaccaatggctgcaatca |
15113354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 18358875 - 18358919
Alignment:
| Q |
81 |
attccaaatatcaggcacaccagggaggcaccaatggctgcaatc |
125 |
Q |
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| T |
18358875 |
attccaagtatcaggaacaccagctaggcaccaatggctgcaatc |
18358919 |
T |
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