View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5576-Insertion-9 (Length: 291)
Name: NF5576-Insertion-9
Description: NF5576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5576-Insertion-9 |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 11 - 291
Target Start/End: Complemental strand, 33690831 - 33690554
Alignment:
| Q |
11 |
atccctggattcacgtaacaaaagtctaagaatgtctgtgtaaacacatgtcataaaacttaaggtaataaattgtaataagtgtttaaacaattaatgt |
110 |
Q |
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| T |
33690831 |
atccctggattcacgtaacaaaagtctaagaatgtctgtgtaaacacatgtcataaaacttaaggtaataaattgtaataagtgtttaaacaataaatgt |
33690732 |
T |
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| Q |
111 |
acacgtattgactattgaacttatgtattgttcgttnnnnnnnttaatgagtgttatgaatcatggaaatctaaggataaaagtcatagtgatcgataag |
210 |
Q |
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| T |
33690731 |
acacgtattgactattgagcatatgtatt---cgttaaaaaaattaatgagtgttatgaatcatggaaatctaaggataaaagtcatagtgatcgataag |
33690635 |
T |
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| Q |
211 |
aaagagtgtataagagtatgagtaatgataattagataaaatatttgatacaaatacaatatcatagacaattttgacatt |
291 |
Q |
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| T |
33690634 |
aaagagtgtataagagtatgagtaatgataattagataaaatatttgatacaaatacaatatcatagacaattttgacatt |
33690554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 45497626 - 45497671
Alignment:
| Q |
246 |
ataaaatatttgatacaaatacaatatcatagacaattttgacatt |
291 |
Q |
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| T |
45497626 |
ataaaatatttgacacaaaaacaacatcatggacaattttgacatt |
45497671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 42665166 - 42665106
Alignment:
| Q |
169 |
aatcatggaaatctaaggataaaagtcatagtgatcgataagaaagagtgtataagagtat |
229 |
Q |
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||||||| || |||||||||||| ||||||||||||| |||||||| | |||||||||| |
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| T |
42665166 |
aatcatgaaattctaaggataaaggtcatagtgatcggctagaaagagagcataagagtat |
42665106 |
T |
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