View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5576_high_1 (Length: 681)
Name: NF5576_high_1
Description: NF5576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5576_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 7 - 677
Target Start/End: Complemental strand, 1793149 - 1792489
Alignment:
| Q |
7 |
cttcaaataggtggctaagtttgagctaccttagagttggatattaatgcaaatagaacgactagtataaaaccaagtgaaaacctccaaacaacaaaaa |
106 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
1793149 |
cttcaaataggtggctaagtttgagctactttagagttggatattaatgcaaatagaacgactagtataaaaccaagtgaaaaactccaaacaacaaaaa |
1793050 |
T |
|
| Q |
107 |
ggatatgaagatcatcgaacaacnnnnnnn--gaacaaaaggatatgtagatggaatcattccttttgggcagaatgccttgaaaatctcacttggtccc |
204 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1793049 |
ggatatgaagatcatcgaacaacaaaaaaaaagaacaaaaggatatgtagatggaatcattccttttgggcagaatgccttgaaaatctcgcttggtccc |
1792950 |
T |
|
| Q |
205 |
ctctggcctctaaagaacattgtattagatttgggaggaattt-gttttggtacatagatgaagtgacaaacagcaatgaaagtcacacatgcaacacaa |
303 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||| ||||||||| |
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| T |
1792949 |
--------tctaaagaacattgtattagatttgggaggaattttgttttgatacatagacgaagtgacaaacagcaatgaaagtcacacacgcaacacaa |
1792858 |
T |
|
| Q |
304 |
ttattaggtcaagagttcagtccacgtgt--acgtggggtaaatgacgtggcataaggtttagtctacgtggagttgccacatgtacatgtaactgttac |
401 |
Q |
| |
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||||||||||||||||||||||||||||| || | || |||||||||| |||||||||| |||| |||||||| ||||||||||| |||||||| |
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| T |
1792857 |
ttattaggtcaagagttcagtccacgtgtgtacataggataaatgacgtagcataaggttcagtccacgtggagctgccacatgta------actgttac |
1792764 |
T |
|
| Q |
402 |
gtcatagagtttaattgccaaaacaaacagatggggtaattgagcaacgcttgacaattttatggggggtttttgaagtttctttgaagtcaaggggatt |
501 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1792763 |
gtcatagagtttaactgccaaaacaaacagatggggtaattgagcaacgcttgacaattttatggggggtttttgaagattctttgaagtcaaggggatt |
1792664 |
T |
|
| Q |
502 |
gtggacaaaagttacaattttggaggttttttccttcatattcactcagttttgcacctattgttgcatatgttgcgacggaaatacataacatatagcc |
601 |
Q |
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| |||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
1792663 |
tttgacaaaagttacaattttggagttttttttcttc-tattcactcagttttgcacctattgttgcatatgttgcgacggaaatacataacatataacc |
1792565 |
T |
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| Q |
602 |
ttttgaagtctttgaattcagcatgcttctgtttttcagaggaaaatgcttttccatatttcttaaacctttgata |
677 |
Q |
| |
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|||||||||||||||||||| ||||||||| |||||||||||||||| |||||||| |||||||| ||||| |||| |
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| T |
1792564 |
ttttgaagtctttgaattcatcatgcttctttttttcagaggaaaattcttttccagatttcttacaccttagata |
1792489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 345 - 467
Target Start/End: Complemental strand, 45576128 - 45576006
Alignment:
| Q |
345 |
tgacgtggcataaggtttagtctacgtggagttgccacatgtacatgtaactgttacgtcatagagtttaattgccaaaacaaacagatggggtaattga |
444 |
Q |
| |
|
|||||||||||| |||||| | || ||||| |||||||||||||| ||| ||| | |||| || ||||||| ||| |||||||| || ||||||||||| |
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| T |
45576128 |
tgacgtggcatacagtttagcccacatggagatgccacatgtacatataaatgtcatgtcaaagggtttaatagcccaaacaaacggagggggtaattga |
45576029 |
T |
|
| Q |
445 |
gcaacgcttgacaattttatggg |
467 |
Q |
| |
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|||| |||||||||||||||| |
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| T |
45576028 |
ctaacgtttgacaattttatggg |
45576006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 434
Target Start/End: Complemental strand, 22919399 - 22919310
Alignment:
| Q |
345 |
tgacgtggcataaggtttagtctacgtggagttgccacatgtacatgtaactgttacgtcatagagtttaattgccaaaacaaacagatg |
434 |
Q |
| |
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|||||| |||||| ||| ||||||| ||||| ||||||||||| | ||| ||||| ||||||| |||||| |||||||| ||| |||| |
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| T |
22919399 |
tgacgtagcataacgttcagtctacatggaggtgccacatgtataattaaatgttatgtcatagggtttaacagccaaaaccaacggatg |
22919310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 345 - 485
Target Start/End: Original strand, 31633547 - 31633686
Alignment:
| Q |
345 |
tgacgtggcataaggtttagtctacgtggagttgccacatgtacatgtaactgttacgtcatagagtttaattgccaaaacaaacagatggggtaattga |
444 |
Q |
| |
|
|||| ||||||| ||||||| | || ||||| |||||||||||||| ||| ||| | |||| || |||||| ||| |||||||| || |||||||| || |
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| T |
31633547 |
tgacatggcatacggtttagcccacatggagatgccacatgtacatataattgtcatgtcacagggtttaacagcccaaacaaacggagggggtaatgga |
31633646 |
T |
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| Q |
445 |
gcaacgcttgacaattttatggggggtttttgaagtttctt |
485 |
Q |
| |
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|| | ||||||||||||| |||||||||||||||||||| |
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| T |
31633647 |
ctaatgtttgacaattttat-gggggtttttgaagtttctt |
31633686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 345 - 466
Target Start/End: Original strand, 27914987 - 27915108
Alignment:
| Q |
345 |
tgacgtggcataaggtttagtctacgtggagttgccacatgtacatgtaactgttacgtcatagagtttaattgccaaaacaaacagatggggtaattga |
444 |
Q |
| |
|
||||||||||||||||| |||| |||||||| ||||||||||||| ||||| |||||||| ||||||| |||||| ||| | | ||||||||||| |
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| T |
27914987 |
tgacgtggcataaggttcagtccacgtggaggtgccacatgtacagttaactaacacgtcataaagtttaacagccaaagtaaataaagggggtaattga |
27915086 |
T |
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| Q |
445 |
gcaacgcttgacaattttatgg |
466 |
Q |
| |
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||| |||||||||| |||| |
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| T |
27915087 |
ctaacatttgacaatttaatgg |
27915108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 413 - 485
Target Start/End: Original strand, 21012413 - 21012484
Alignment:
| Q |
413 |
taattgccaaaacaaacagatggggtaattgagcaacgcttgacaattttatggggggtttttgaagtttctt |
485 |
Q |
| |
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|||| ||||||||||||||| ||||||||||| |||| |||||||||| | | |||| |||||||||||||| |
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| T |
21012413 |
taatagccaaaacaaacagagggggtaattgattaacgtttgacaatttcaagtgggg-ttttgaagtttctt |
21012484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 418 - 485
Target Start/End: Complemental strand, 29500137 - 29500069
Alignment:
| Q |
418 |
gccaaaacaaacagat-ggggtaattgagcaacgcttgacaattttatggggggtttttgaagtttctt |
485 |
Q |
| |
|
|||||||||||| || ||||||||||| |||| |||||||||||||| | ||||| ||||||||||| |
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| T |
29500137 |
gccaaaacaaacggagaggggtaattgactaacgtttgacaattttatgagaggtttatgaagtttctt |
29500069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 434 - 521
Target Start/End: Original strand, 45114917 - 45115003
Alignment:
| Q |
434 |
ggggtaattgagcaacgcttgacaattttatggggggtttttgaagtttctttgaagtcaaggggattgtggacaaaagttacaattt |
521 |
Q |
| |
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||||||||| | |||| |||||||||| ||| |||||||| |||||||||| ||||||||||| || | ||| ||||||||||||| |
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| T |
45114917 |
ggggtaattaactaacgtttgacaatttcatgaggggtttt-gaagtttcttaaaagtcaagggggtttttgacgaaagttacaattt |
45115003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 370 - 461
Target Start/End: Complemental strand, 50382028 - 50381936
Alignment:
| Q |
370 |
gtggagttgccacatgtacatgtaactgttacgtcatagagtttaattgccaaaacaaacaga-tggggtaattgagcaacgcttgacaattt |
461 |
Q |
| |
|
|||||| |||||||||||||| || || |||||||| |||||| ||||||||||||||| ||||||||||| |||| |||||||||| |
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| T |
50382028 |
gtggaggtgccacatgtacatttatttgccacgtcatatggtttaacagccaaaacaaacagaggggggtaattgactaacgtttgacaattt |
50381936 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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