View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5576_high_12 (Length: 301)
Name: NF5576_high_12
Description: NF5576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5576_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 43482803 - 43483001
Alignment:
| Q |
19 |
ctgtaggcatctccaaacctcacctgaacagaaataacaactgacatgatatgaagtacgttatcatatattaaaacatgatatttatttgagattaatt |
118 |
Q |
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| T |
43482803 |
ctgtaggcatctccaaacctcacctgaacagaaataacaagtgacatgatatgaagtacgttatcatatattaaaacatgatatttatttgagattaatt |
43482902 |
T |
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| Q |
119 |
tctaatatgacaccaacatcaaatggcaaatcaaatatgtattccgtcgaatcacaccactacacctcactttaatggtacgacatgaaatagttgatt |
217 |
Q |
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| T |
43482903 |
tctaatatgacaccaacatcaaatggcaaatcaaatatgtattccgtcaaatcacaccactacacctcactttaatggaacgacatgaaatagttgatt |
43483001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 217 - 288
Target Start/End: Original strand, 43483029 - 43483101
Alignment:
| Q |
217 |
tatgtttcacagataatataggctaaatacctctttggtcatttaagtttgacaaaaaca-cgagttagtcct |
288 |
Q |
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| T |
43483029 |
tatgtttcatagataatataggctaaatacctctttggtcatttaagtttgacaaaaacaccgagttagtcct |
43483101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 43475590 - 43475626
Alignment:
| Q |
19 |
ctgtaggcatctccaaacctcacctgaacagaaataa |
55 |
Q |
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| T |
43475590 |
ctgtaggcatctccaaatctcacctgaacagaaataa |
43475626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 198
Target Start/End: Complemental strand, 2345427 - 2345385
Alignment:
| Q |
156 |
tgtattccgtcgaatcacaccactacacctcactttaatggta |
198 |
Q |
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| T |
2345427 |
tgtattccgtcaaatcactccactacaccccactttaatggta |
2345385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 274
Target Start/End: Complemental strand, 33720073 - 33720029
Alignment:
| Q |
231 |
aatataggctaaatacctc-tttggtcatttaagtttgacaaaaa |
274 |
Q |
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| T |
33720073 |
aatataggctaaatacctcttttggtcctttaagttcgacaaaaa |
33720029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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