View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5576_high_14 (Length: 295)

Name: NF5576_high_14
Description: NF5576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5576_high_14
NF5576_high_14
[»] chr8 (10 HSPs)
chr8 (8-242)||(11647688-11647928)
chr8 (168-227)||(1528465-1528524)
chr8 (172-219)||(35824427-35824474)
chr8 (172-242)||(16730015-16730085)
chr8 (165-242)||(9381582-9381658)
chr8 (172-220)||(7972731-7972779)
chr8 (179-219)||(23231752-23231792)
chr8 (178-220)||(31597830-31597872)
chr8 (175-240)||(15663431-15663495)
chr8 (171-236)||(28374114-28374179)
[»] chr1 (5 HSPs)
chr1 (175-242)||(47396850-47396917)
chr1 (171-242)||(23663856-23663926)
chr1 (172-242)||(25095455-25095524)
chr1 (178-242)||(27430551-27430615)
chr1 (178-242)||(9023715-9023778)
[»] chr2 (12 HSPs)
chr2 (169-226)||(38565817-38565874)
chr2 (179-242)||(14904696-14904759)
chr2 (172-219)||(25622129-25622176)
chr2 (172-219)||(30387378-30387425)
chr2 (172-242)||(7444197-7444266)
chr2 (172-226)||(41302039-41302093)
chr2 (172-239)||(31548608-31548675)
chr2 (172-242)||(6883912-6883982)
chr2 (171-225)||(18580961-18581015)
chr2 (172-225)||(22575732-22575785)
chr2 (172-225)||(27861586-27861639)
chr2 (172-225)||(38698794-38698847)
[»] chr3 (7 HSPs)
chr3 (175-220)||(33100183-33100228)
chr3 (172-242)||(16876622-16876690)
chr3 (179-219)||(40145784-40145824)
chr3 (172-225)||(1418207-1418260)
chr3 (173-226)||(11830148-11830201)
chr3 (172-214)||(1425071-1425113)
chr3 (172-225)||(22918434-22918487)
[»] chr4 (8 HSPs)
chr4 (171-220)||(39480000-39480049)
chr4 (171-219)||(21320496-21320544)
chr4 (178-225)||(24610837-24610884)
chr4 (178-239)||(23935649-23935710)
chr4 (172-240)||(10142804-10142871)
chr4 (176-220)||(21035583-21035627)
chr4 (170-242)||(51890294-51890366)
chr4 (170-242)||(51890567-51890639)
[»] chr5 (7 HSPs)
chr5 (178-225)||(23963152-23963199)
chr5 (178-220)||(9409316-9409358)
chr5 (178-242)||(6769107-6769171)
chr5 (178-225)||(13382354-13382401)
chr5 (171-218)||(37135396-37135443)
chr5 (171-225)||(42879896-42879950)
chr5 (171-220)||(13490687-13490736)
[»] chr6 (6 HSPs)
chr6 (178-242)||(13758337-13758401)
chr6 (172-215)||(11680223-11680266)
chr6 (178-220)||(21442890-21442932)
chr6 (179-221)||(26817918-26817960)
chr6 (172-225)||(31473854-31473907)
chr6 (178-242)||(15060429-15060493)
[»] chr7 (3 HSPs)
chr7 (172-219)||(8113252-8113299)
chr7 (178-225)||(31072278-31072325)
chr7 (172-225)||(15678512-15678565)


Alignment Details
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 8 - 242
Target Start/End: Original strand, 11647688 - 11647928
Alignment:
Q  8 aaattatactacactcaaacactacatgtcaaaatgaacgggttggtttggacaaattttttggtca------gacaaacaacttaatttgtagattata 101  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||      ||||||||||||||||||||| |||||    
T  11647688 aaattatactatactcaaacactacatgtcaaaatgaacgggttggtttggacaaattttttgggcatgtttagacaaacaacttaatttgtagcttata 11647787  T
Q  102 gcataaatgttgatcatagtagtgatatgtcggccggaggaaggtgaggaggacatcaagttattatgtgcagggtcgttcctagagttttataggtctt 201  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||  |||    
T  11647788 gcataaatgttgaccatggtagtgatatgtcggccggaggaaggtgaggaggacatcaagtcattatgtgcagggtcgttcctagagttttacagacctt 11647887  T
Q  202 aggcataatatgagaaaagagcccccaacataatacatcat 242  Q
    || |||||||||||||||||||||| |||||||||||||||    
T  11647888 agacataatatgagaaaagagcccctaacataatacatcat 11647928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 1528524 - 1528465
Alignment:
Q  168 tgtgcagggtcgttcctagagttttataggtcttaggcataatatgagaaaagagccccc 227  Q
    |||||||||||||||||||||| ||| | |  ||||||||||||||||||||| ||||||    
T  1528524 tgtgcagggtcgttcctagagtgttacatgctttaggcataatatgagaaaagggccccc 1528465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 35824474 - 35824427
Alignment:
Q  172 cagggtcgttcctagagttttataggtcttaggcataatatgagaaaa 219  Q
    ||||||||||||||||||||||  ||||| ||||||||||||||||||    
T  35824474 cagggtcgttcctagagttttaggggtctaaggcataatatgagaaaa 35824427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 242
Target Start/End: Complemental strand, 16730085 - 16730015
Alignment:
Q  172 cagggtcgttcctagagttttataggtcttaggcataatatgagaaaagagcccccaacataatacatcat 242  Q
    ||||||||||||||||||||||  || |||||||||||||||| ||||  | |||  ||||||||||||||    
T  16730085 cagggtcgttcctagagttttacgggccttaggcataatatgaaaaaaaggtcccttacataatacatcat 16730015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 242
Target Start/End: Original strand, 9381582 - 9381658
Alignment:
Q  165 ttatgtgcagggtcgttcctagagttttataggtcttaggcataatatgagaaaagagcccccaacataatacatcat 242  Q
    |||| ||||||| |||| |||||||||||  | ||||||||||||||||||||||  | |||| ||||||||||||||    
T  9381582 ttatttgcagggccgtttctagagttttaaggatcttaggcataatatgagaaaa-tgacccctacataatacatcat 9381658  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 7972731 - 7972779
Alignment:
Q  172 cagggtcgttcctagagttttataggtcttaggcataatatgagaaaag 220  Q
    ||||| ||||||||||||||||| || |||||||||||||||| |||||    
T  7972731 cagggccgttcctagagttttatgggccttaggcataatatgaaaaaag 7972779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 23231752 - 23231792
Alignment:
Q  179 gttcctagagttttataggtcttaggcataatatgagaaaa 219  Q
    ||||||||||||||| ||||||||| |||||||||||||||    
T  23231752 gttcctagagttttacaggtcttagacataatatgagaaaa 23231792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 31597872 - 31597830
Alignment:
Q  178 cgttcctagagttttataggtcttaggcataatatgagaaaag 220  Q
    |||||||||||||||| ||| |||||||||||||||| |||||    
T  31597872 cgttcctagagttttacaggccttaggcataatatgaaaaaag 31597830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 240
Target Start/End: Complemental strand, 15663495 - 15663431
Alignment:
Q  175 ggtcgttcctagagttttataggtcttaggcataatatgagaaaagagcccccaacataatacatc 240  Q
    ||||||||||| |||||||  || ||||| |||||||||||||||| |||||  ||||||||||||    
T  15663495 ggtcgttcctatagttttagcgggcttagacataatatgagaaaag-gccccttacataatacatc 15663431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 236
Target Start/End: Original strand, 28374114 - 28374179
Alignment:
Q  171 gcagggtcgttcctagagttttataggtcttaggcataatatgagaaaagagcccccaacataata 236  Q
    |||||| |||||||||||||||  |   ||||||||||||||||||||||||| ||  ||||||||    
T  28374114 gcagggccgttcctagagtttttcaaaccttaggcataatatgagaaaagagctccttacataata 28374179  T

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Target: chr1 (Bit Score: 52; Significance: 8e-21; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 47396850 - 47396917
Alignment:
Q  175 ggtcgttcctagagttttataggtcttaggcataatatgagaaaagagcccccaacataatacatcat 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||| ||||||    
T  47396850 ggtcgttcctagagttttataggtcttaggcataatatgagaaaagaaccccttacataattcatcat 47396917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 242
Target Start/End: Original strand, 23663856 - 23663926
Alignment:
Q  171 gcagggtcgttcctagagttttataggtcttaggcataatatgagaaaagagcccccaacataatacatcat 242  Q
    |||||| ||||||||||||||||  || |||||||||||||||| ||||| | |||||||||||||||||||    
T  23663856 gcagggccgttcctagagttttacgggccttaggcataatatgaaaaaag-gtccccaacataatacatcat 23663926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 242
Target Start/End: Complemental strand, 25095524 - 25095455
Alignment:
Q  172 cagggtcgttcctagagttttataggtcttaggcataatatgagaaaagagcccccaacataatacatcat 242  Q
    ||||||||||||||||||||||  || |||||||||||||||| | ||| | ||| |||||||||||||||    
T  25095524 cagggtcgttcctagagttttacgggccttaggcataatatgaaagaag-gtccctaacataatacatcat 25095455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 27430551 - 27430615
Alignment:
Q  178 cgttcctagagttttataggtcttaggcataatatgagaaaagagcccccaacataatacatcat 242  Q
    |||||||||||||||| ||| |||||||||||||||| |||| || |||  ||||||| ||||||    
T  27430551 cgttcctagagttttacaggccttaggcataatatgaaaaaaaaggcccttacataatgcatcat 27430615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 9023778 - 9023715
Alignment:
Q  178 cgttcctagagttttataggtcttaggcataatatgagaaaagagcccccaacataatacatcat 242  Q
    ||||||||||||||||  |  |||||||||||||||||||| || ||||  ||||||||||||||    
T  9023778 cgttcctagagttttacggaccttaggcataatatgagaaagga-ccccttacataatacatcat 9023715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 169 - 226
Target Start/End: Original strand, 38565817 - 38565874
Alignment:
Q  169 gtgcagggtcgttcctagagttttataggtcttaggcataatatgagaaaagagcccc 226  Q
    |||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||    
T  38565817 gtgcagggtcattcctagagttttacgggtcttaggcataatatgagaaaagagcccc 38565874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 14904759 - 14904696
Alignment:
Q  179 gttcctagagttttataggtcttaggcataatatgagaaaagagcccccaacataatacatcat 242  Q
    |||||||||||||||  || |||| |||||||||||||||| ||||||  ||||||||||||||    
T  14904759 gttcctagagttttaggggccttaagcataatatgagaaaaaagccccttacataatacatcat 14904696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 25622176 - 25622129
Alignment:
Q  172 cagggtcgttcctagagttttataggtcttaggcataatatgagaaaa 219  Q
    ||||||||||||||||||||||  ||||||| ||||||||||||||||    
T  25622176 cagggtcgttcctagagttttaggggtcttaagcataatatgagaaaa 25622129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 30387425 - 30387378
Alignment:
Q  172 cagggtcgttcctagagttttataggtcttaggcataatatgagaaaa 219  Q
    |||||||||||||||||||||   ||||||||||||||||||||||||    
T  30387425 cagggtcgttcctagagtttttcgggtcttaggcataatatgagaaaa 30387378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 242
Target Start/End: Complemental strand, 7444266 - 7444197
Alignment:
Q  172 cagggtcgttcctagagttttataggtcttaggcataatatgagaaaagagcccccaacataatacatcat 242  Q
    ||||| ||||||||||||||||  ||||||||||||||||||| ||||| | |||  ||||||||||||||    
T  7444266 cagggccgttcctagagttttacgggtcttaggcataatatgaaaaaag-ggcccttacataatacatcat 7444197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 41302039 - 41302093
Alignment:
Q  172 cagggtcgttcctagagttttataggtcttaggcataatatgagaaaagagcccc 226  Q
    ||||| ||||||||||||||||  || |||||||||||||||||||||| |||||    
T  41302039 cagggccgttcctagagttttacgggccttaggcataatatgagaaaagggcccc 41302093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 31548608 - 31548675
Alignment:
Q  172 cagggtcgttcctagagttttataggtcttaggcataatatgagaaaagagcccccaacataatacat 239  Q
    ||||| |||| ||||||||||| ||||||||| | |||||||||||||| | |||  |||||||||||    
T  31548608 cagggccgtttctagagttttacaggtcttagacttaatatgagaaaagggtcccttacataatacat 31548675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 242
Target Start/End: Complemental strand, 6883982 - 6883912
Alignment:
Q  172 cagggtcgttcctagagttttataggtcttaggcataatatgagaaaagagcccccaacataatacatcat 242  Q
    |||||||||||||| ||||||| | ||||||  |||||||||||||||| ||  |  ||||||||||||||    
T  6883982 cagggtcgttcctaaagttttacaagtcttacacataatatgagaaaagggcttcttacataatacatcat 6883912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 18580961 - 18581015
Alignment:
Q  171 gcagggtcgttcctagagttttataggtcttaggcataatatgagaaaagagccc 225  Q
    |||||| |||||||||||||||| ||| |||||||||| ||||| ||||| ||||    
T  18580961 gcagggccgttcctagagttttacaggccttaggcatagtatgaaaaaagggccc 18581015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 22575732 - 22575785
Alignment:
Q  172 cagggtcgttcctagagttttataggtcttaggcataatatgagaaaagagccc 225  Q
    ||||| ||||||||||||||||  || |||||||||||||||| ||||| ||||    
T  22575732 cagggccgttcctagagttttacgggccttaggcataatatgaaaaaagggccc 22575785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 27861586 - 27861639
Alignment:
Q  172 cagggtcgttcctagagttttataggtcttaggcataatatgagaaaagagccc 225  Q
    ||||| ||||||||||||||||  || |||||||||||||||| ||||| ||||    
T  27861586 cagggccgttcctagagttttacgggccttaggcataatatgaaaaaagggccc 27861639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 38698847 - 38698794
Alignment:
Q  172 cagggtcgttcctagagttttataggtcttaggcataatatgagaaaagagccc 225  Q
    ||||| |||||||||||||||| ||| |||||||||| ||||| ||||| ||||    
T  38698847 cagggccgttcctagagttttacaggccttaggcatagtatgaaaaaagggccc 38698794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 33100183 - 33100228
Alignment:
Q  175 ggtcgttcctagagttttataggtcttaggcataatatgagaaaag 220  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  33100183 ggtcgttcctagagttttacaggtcttaggcataatatgagaaaag 33100228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 16876622 - 16876690
Alignment:
Q  172 cagggtcgttcctagagttttataggtcttaggcataatatgagaaaagagcccccaacataatacatcat 242  Q
    |||||||||||||||  ||||| ||| |||||||||||||||||||||| |||||  ||||||||||||||    
T  16876622 cagggtcgttcctag--ttttacaggccttaggcataatatgagaaaagggccccatacataatacatcat 16876690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 40145824 - 40145784
Alignment:
Q  179 gttcctagagttttataggtcttaggcataatatgagaaaa 219  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  40145824 gttcctagagttttacaggtcttaggcataatatgagaaaa 40145784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 1418207 - 1418260
Alignment:
Q  172 cagggtcgttcctagagttttataggtcttaggcataatatgagaaaagagccc 225  Q
    ||||| |||||||||||||||| ||| |||||||||||||||| ||||| ||||    
T  1418207 cagggccgttcctagagttttacaggccttaggcataatatgaaaaaagggccc 1418260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 11830148 - 11830201
Alignment:
Q  173 agggtcgttcctagagttttataggtcttaggcataatatgagaaaagagcccc 226  Q
    |||| |||||||||||||||| ||  |||||||||||||||||||||| |||||    
T  11830148 agggccgttcctagagttttacagaccttaggcataatatgagaaaagggcccc 11830201  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 214
Target Start/End: Complemental strand, 1425113 - 1425071
Alignment:
Q  172 cagggtcgttcctagagttttataggtcttaggcataatatga 214  Q
    ||||| |||||||||||||||||||| ||||||||| ||||||    
T  1425113 cagggccgttcctagagttttataggccttaggcatgatatga 1425071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 22918487 - 22918434
Alignment:
Q  172 cagggtcgttcctagagttttataggtcttaggcataatatgagaaaagagccc 225  Q
    ||||| |||||||||||||||| ||| |||||||||| ||||| ||||| ||||    
T  22918487 cagggccgttcctagagttttacaggccttaggcatagtatgaaaaaagggccc 22918434  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 39480000 - 39480049
Alignment:
Q  171 gcagggtcgttcctagagttttataggtcttaggcataatatgagaaaag 220  Q
    |||||||||||||||||||||||| || |||||||||||||||| |||||    
T  39480000 gcagggtcgttcctagagttttatgggccttaggcataatatgaaaaaag 39480049  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 21320544 - 21320496
Alignment:
Q  171 gcagggtcgttcctagagttttataggtcttaggcataatatgagaaaa 219  Q
    ||||||||||||||||||||||  || ||||||||||||||||||||||    
T  21320544 gcagggtcgttcctagagtttttcagatcttaggcataatatgagaaaa 21320496  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 24610837 - 24610884
Alignment:
Q  178 cgttcctagagttttataggtcttaggcataatatgagaaaagagccc 225  Q
    |||||| ||||||||| |||| ||||||||||||||||||||| ||||    
T  24610837 cgttccgagagttttacaggttttaggcataatatgagaaaagggccc 24610884  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 23935649 - 23935710
Alignment:
Q  178 cgttcctagagttttataggtcttaggcataatatgagaaaagagcccccaacataatacat 239  Q
    ||||||||||||||||  || ||||| ||||||||||||| || |||||  |||||||||||    
T  23935649 cgttcctagagttttacgggccttagacataatatgagaagagggccccttacataatacat 23935710  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 240
Target Start/End: Complemental strand, 10142871 - 10142804
Alignment:
Q  172 cagggtcgttcctagagttttataggtcttaggcataatatgagaaaagagcccccaacataatacatc 240  Q
    ||||| ||||||||||||||||  |||||||| ||||| ||||||||||  ||||  ||||||||||||    
T  10142871 cagggccgttcctagagttttaggggtcttagccataa-atgagaaaaggaccccttacataatacatc 10142804  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 21035627 - 21035583
Alignment:
Q  176 gtcgttcctagagttttataggtcttaggcataatatgagaaaag 220  Q
    ||||||||||| ||||||||||| ||||  |||||||||||||||    
T  21035627 gtcgttcctagtgttttataggttttagttataatatgagaaaag 21035583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 51890294 - 51890366
Alignment:
Q  170 tgcagggtcgttcctagagttttataggtcttaggcataatatgagaaaagagcccccaacataatacatcat 242  Q
    ||||||| | ||||||||||||||  || ||| |||||||||||| ||||| |||||  |||||||| |||||    
T  51890294 tgcagggccattcctagagttttaggggccttgggcataatatgataaaagggccccttacataataaatcat 51890366  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 51890567 - 51890639
Alignment:
Q  170 tgcagggtcgttcctagagttttataggtcttaggcataatatgagaaaagagcccccaacataatacatcat 242  Q
    ||||||| | ||||||||||||||  || ||| |||||||||||| ||||| |||||  |||||||| |||||    
T  51890567 tgcagggccattcctagagttttaggggccttgggcataatatgataaaagggccccttacataataaatcat 51890639  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 23963199 - 23963152
Alignment:
Q  178 cgttcctagagttttataggtcttaggcataatatgagaaaagagccc 225  Q
    |||||||||||||||||||| |||||||||||||||| ||||| ||||    
T  23963199 cgttcctagagttttataggccttaggcataatatgaaaaaagggccc 23963152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 220
Target Start/End: Original strand, 9409316 - 9409358
Alignment:
Q  178 cgttcctagagttttataggtcttaggcataatatgagaaaag 220  Q
    ||||||||||||||||| ||||||||||||||||||| |||||    
T  9409316 cgttcctagagttttatgggtcttaggcataatatgaaaaaag 9409358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 6769107 - 6769171
Alignment:
Q  178 cgttcctagagttttataggtcttaggcataatatgagaaaagagcccccaacataatacatcat 242  Q
    |||||||||||||||| ||| |||| |||||||||||||||||  ||||  | ||||||||||||    
T  6769107 cgttcctagagttttacaggccttaagcataatatgagaaaaggtccccttagataatacatcat 6769171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 13382354 - 13382401
Alignment:
Q  178 cgttcctagagttttataggtcttaggcataatatgagaaaagagccc 225  Q
    |||||||||||||||| ||| |||||||||||||||| ||||| ||||    
T  13382354 cgttcctagagttttacaggccttaggcataatatgaaaaaagggccc 13382401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 218
Target Start/End: Complemental strand, 37135443 - 37135396
Alignment:
Q  171 gcagggtcgttcctagagttttataggtcttaggcataatatgagaaa 218  Q
    ||||||||||| |||||||||||   ||||||||||||||||||||||    
T  37135443 gcagggtcgtttctagagttttaagtgtcttaggcataatatgagaaa 37135396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 42879950 - 42879896
Alignment:
Q  171 gcagggtcgttcctagagttttataggtcttaggcataatatgagaaaagagccc 225  Q
    |||||| ||||||||||||||||  || |||||||||||||||| ||||| ||||    
T  42879950 gcagggccgttcctagagttttacgggccttaggcataatatgaaaaaagggccc 42879896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 13490736 - 13490687
Alignment:
Q  171 gcagggtcgttcctagagttttataggtcttaggcataatatgagaaaag 220  Q
    |||||| |||| ||||||||||| ||| |||||||||||||||| |||||    
T  13490736 gcagggccgtttctagagttttacaggccttaggcataatatgaaaaaag 13490687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 13758337 - 13758401
Alignment:
Q  178 cgttcctagagttttataggtcttaggcataatatgagaaaagagcccccaacataatacatcat 242  Q
    ||||| ||| |||||| ||||| |||||||||||||||||||  |||||  ||||||||||||||    
T  13758337 cgttcatagcgttttacaggtcgtaggcataatatgagaaaaatgccccttacataatacatcat 13758401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 11680223 - 11680266
Alignment:
Q  172 cagggtcgttcctagagttttataggtcttaggcataatatgag 215  Q
    |||||||||||||||||||||| | ||||||| |||||||||||    
T  11680223 cagggtcgttcctagagttttagaagtcttagacataatatgag 11680266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 21442932 - 21442890
Alignment:
Q  178 cgttcctagagttttataggtcttaggcataatatgagaaaag 220  Q
    |||||||||||||||||  |||||||||||||||||| |||||    
T  21442932 cgttcctagagttttatgagtcttaggcataatatgaaaaaag 21442890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 221
Target Start/End: Complemental strand, 26817960 - 26817918
Alignment:
Q  179 gttcctagagttttataggtcttaggcataatatgagaaaaga 221  Q
    ||||||| |||||||  ||||||||||||||||||||||||||    
T  26817960 gttcctatagttttacgggtcttaggcataatatgagaaaaga 26817918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 31473854 - 31473907
Alignment:
Q  172 cagggtcgttcctagagttttataggtcttaggcataatatgagaaaagagccc 225  Q
    ||||| |||||||||||||||| ||| |||||||||| ||||| ||||| ||||    
T  31473854 cagggccgttcctagagttttacaggccttaggcatagtatgaaaaaagggccc 31473907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 15060493 - 15060429
Alignment:
Q  178 cgttcctagagttttataggtcttaggcataatatgagaaaagagcccccaacataatacatcat 242  Q
    |||||||| |||||||| || |||| ||||||||||||||||| | |||  ||| ||||||||||    
T  15060493 cgttcctaaagttttatgggccttatgcataatatgagaaaagggtcccttacaaaatacatcat 15060429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 8113252 - 8113299
Alignment:
Q  172 cagggtcgttcctagagttttataggtcttaggcataatatgagaaaa 219  Q
    ||||| ||||||||||||||||  |||||||| |||||||||||||||    
T  8113252 cagggccgttcctagagttttaggggtcttagacataatatgagaaaa 8113299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 31072278 - 31072325
Alignment:
Q  178 cgttcctagagttttataggtcttaggcataatatgagaaaagagccc 225  Q
    ||||||||||||||||| || |||||||||||||||| ||||| ||||    
T  31072278 cgttcctagagttttatgggccttaggcataatatgaaaaaagggccc 31072325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 15678512 - 15678565
Alignment:
Q  172 cagggtcgttcctagagttttataggtcttaggcataatatgagaaaagagccc 225  Q
    ||||| ||||||||||||||||  ||||||||||||| ||||| ||||| ||||    
T  15678512 cagggccgttcctagagttttacgggtcttaggcatagtatgaaaaaagggccc 15678565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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