View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5576_high_2 (Length: 568)
Name: NF5576_high_2
Description: NF5576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5576_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 517; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 9 - 554
Target Start/End: Original strand, 49427512 - 49428053
Alignment:
| Q |
9 |
acagagtagacgaactcattaaagcaaaaaagggcttctcggtgtttcaagtccacatccaatctgagagtggggacagagagccagagatgcgtccatc |
108 |
Q |
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| T |
49427512 |
acagagtagacgaactcattaaagcaaaaaagggcttctcggtgtttcaagtccacatccaatctgagagtggggacagagagccagagatgcgtccatc |
49427611 |
T |
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| Q |
109 |
tcttcgaaaggacactagtggcaaccgcctgttcggttgggagaaaagagataatatgacagatgacacggtctggtaaatcgctgatcacataaggacg |
208 |
Q |
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| T |
49427612 |
tcttcgaaaggacactagtggcaaccgcctgttcggttgggagaaaagagataatatgacagatgacacggtctggtaaatcgctgatcacatcacgacg |
49427711 |
T |
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| Q |
209 |
atcatccccggttgatgacattaatttcttctagcgtaagagaacttgaattttctacataacatacaacatactaacattaacattagaccacaaagga |
308 |
Q |
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| T |
49427712 |
atcatccccggttgatgacatt----tcttctagcgtaagagaacttgaattttctacataacatacaacatactaacattaacattagaccacaaagga |
49427807 |
T |
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| Q |
309 |
aactgattattgttgaagtgataattccaaaccaacgaaagagacaagtacacaaagcaaaatacatcatccaatatttagatcaattaacgatgccgta |
408 |
Q |
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| T |
49427808 |
aactgattattgttgaagtgataattccaaaccaacgaaagagacaagtacacaaagcaaaatacatcatccaatatttagatcaattaacgatgccgta |
49427907 |
T |
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| Q |
409 |
taaatatatgaagctttgtcgtctttgtttgaagttgatacaaatactgaccacatgacaggtactaatataattgaatcatattcattgaataaacgaa |
508 |
Q |
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| T |
49427908 |
taaatatatgaagctttgtcgtctttgtttgaaattgatacaaatactgaccacatgacaggtactaatataattgaatcatattcattgaataaacgaa |
49428007 |
T |
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| Q |
509 |
aatatgttatgaatttgtaaagagatggaaaaggagacatacatac |
554 |
Q |
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| T |
49428008 |
aatatgttatgaatttgtaaagagatggaaaaggagacatacatac |
49428053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 103 - 174
Target Start/End: Original strand, 49446505 - 49446576
Alignment:
| Q |
103 |
tccatctcttcgaaaggacactagtggcaaccgcctgttcggttgggagaaaagagataatatgacagatga |
174 |
Q |
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| T |
49446505 |
tccacctctttgcaaggacactagtggcaacagcttgtttggtagggagaaaagagagaatatgacagatga |
49446576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 97 - 166
Target Start/End: Original strand, 49439011 - 49439080
Alignment:
| Q |
97 |
gatgcgtccatctcttcgaaaggacactagtggcaaccgcctgttcggttgggagaaaagagataatatg |
166 |
Q |
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| T |
49439011 |
gatgcttccatctcttggataggacgctagtggcaacaacctgtttggttgggagaaaagagagaatatg |
49439080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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