View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5576_high_20 (Length: 245)
Name: NF5576_high_20
Description: NF5576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5576_high_20 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 8 - 245
Target Start/End: Original strand, 11711579 - 11711816
Alignment:
| Q |
8 |
aatatcagcaacctcagatcctaatgaacaagtggattcatggccaaatcaagagtttaagttagaagctgttcattcttcagaggcatttgagatgata |
107 |
Q |
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| T |
11711579 |
aatatcagcaacctcagatcctaatgaacaagtggattcatggccaaatcaagagtttaagttagaagctgttcattcttcagaggcatttgagatgata |
11711678 |
T |
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| Q |
108 |
cagagtcacttgtctctggtactaggagaacggactgtgggtcctctccagacaattattcagattagcaaaatcaagctgggtaagttatacgctgctt |
207 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11711679 |
cagagtcacttgtctctggtactaggagaacgggctgtgggtcctcttcagacaattattcagattagcaaaatcaagctgggtaagttatacgctgctt |
11711778 |
T |
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| Q |
208 |
caataatgtatggatattttctcaaacgggttgatgaa |
245 |
Q |
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| T |
11711779 |
caataatgtatggatattttctcaaacgggttgatgaa |
11711816 |
T |
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