View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5576_high_21 (Length: 242)
Name: NF5576_high_21
Description: NF5576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5576_high_21 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 4809794 - 4809574
Alignment:
| Q |
19 |
tcttaaatttctcttatgagtatttatctctatcaagttctcaaacttattttacatataagatgaatattcatctccatgatcttgtgctttctaacat |
118 |
Q |
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| T |
4809794 |
tcttaaatttctcttatgagtatttatctctatcaagttctcaaacttattttacatataagatgaatattcatctccatgatcttgtgctttctaacat |
4809695 |
T |
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| Q |
119 |
ggtctcatgttgcctcagagaactctttatgttctcatttgcattagcattaacttccaaactgacagcattaattatgtctcaaattctccttattaac |
218 |
Q |
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| T |
4809694 |
ggtctcatgttgcctcagaggactctttatgttctcatttgcattagcattaacttccaaactgacagcattaattatgtctcaaattctccttattaac |
4809595 |
T |
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| Q |
219 |
catactgatcttatgcttatgctt |
242 |
Q |
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||||| |||||||||||||||| |
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| T |
4809594 |
catac---tcttatgcttatgctt |
4809574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 178
Target Start/End: Complemental strand, 4816951 - 4816919
Alignment:
| Q |
146 |
tatgttctcatttgcattagcattaacttccaa |
178 |
Q |
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| T |
4816951 |
tatgttctcatttgcattagcagtaacttccaa |
4816919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 127 - 225
Target Start/End: Complemental strand, 27511197 - 27511103
Alignment:
| Q |
127 |
gttgcctcagagaactctttatgttctcatttgcattagcattaacttccaaactgacagcattaattatgtctcaaattctccttattaaccatactg |
225 |
Q |
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| T |
27511197 |
gttgcctcaaaggactctttatgttctcatttgcattagcagtaacttccaaactgacagcaataa----gcctcaaattctccttataaaccatactg |
27511103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 117
Target Start/End: Original strand, 25219290 - 25219358
Alignment:
| Q |
49 |
tatcaagttctcaaacttattttacatataagatgaatattcatctccatgatcttgtgctttctaaca |
117 |
Q |
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| T |
25219290 |
tatcaagctctcaaacttatttcaaatatgagatgaatattcatctctttgatcatgtgatttataaca |
25219358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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