View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5576_high_22 (Length: 241)
Name: NF5576_high_22
Description: NF5576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5576_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 33238101 - 33238322
Alignment:
| Q |
1 |
tgttcatttcaagcctcaacaaagttgacgatgagatcctgctgttaaattctatccatgacagattgcaggacaatccacaagtgataacaggttacaa |
100 |
Q |
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| T |
33238101 |
tgttcatttcaagcctcaacaaagttgacgatgagatcctgctgttaaattctatccatgacagattgcaggacaatccacaagtgataaaaggttacaa |
33238200 |
T |
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| Q |
101 |
gaaagaggatttcaagattttgtggatcccgatctgggatgttgatgatcagaagatcaagttcgattcattgaagaataagatcagattttatgcagtg |
200 |
Q |
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| T |
33238201 |
gaaagaggatttcaagattttgtggatcccgatctgggatgtcgatgatcagaagatcaagttcgattcgttgaagaataagatcagattttatgcagtg |
33238300 |
T |
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| Q |
201 |
gactacttctctgagttacctg |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
33238301 |
gactacttctctgagttacctg |
33238322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 127
Target Start/End: Original strand, 33230457 - 33230560
Alignment:
| Q |
30 |
gatgagatcctgctgttaaattctatccatgacagattgcaggacaatccacaag---tgataacagg---ttacaagaaagaggatttcaagattttgt |
123 |
Q |
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|||||||| ||||||||||||| ||| || | |||||||||||||| ||||||| || ||| ||| || |||||||||||||||||||||||||| |
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| T |
33230457 |
gatgagattttgctgttaaattcaatctataaaagattgcaggacaaaccacaagaagtgttaaaaggaagtttcaagaaagaggatttcaagattttgt |
33230556 |
T |
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| Q |
124 |
ggat |
127 |
Q |
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|||| |
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| T |
33230557 |
ggat |
33230560 |
T |
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