View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5576_high_30 (Length: 217)

Name: NF5576_high_30
Description: NF5576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5576_high_30
NF5576_high_30
[»] chr5 (6 HSPs)
chr5 (20-201)||(29712840-29713021)
chr5 (20-158)||(29695721-29695859)
chr5 (20-138)||(29687640-29687758)
chr5 (44-113)||(42562726-42562795)
chr5 (47-109)||(1812043-1812105)
chr5 (47-108)||(178638-178699)
[»] chr1 (5 HSPs)
chr1 (20-108)||(24309796-24309884)
chr1 (47-122)||(24322067-24322142)
chr1 (46-109)||(24340032-24340095)
chr1 (50-108)||(24415456-24415514)
chr1 (47-95)||(24366787-24366835)
[»] chr4 (29 HSPs)
chr4 (47-126)||(48156825-48156904)
chr4 (45-123)||(45366617-45366695)
chr4 (44-125)||(48148080-48148161)
chr4 (44-109)||(48862859-48862924)
chr4 (20-102)||(7904657-7904739)
chr4 (47-109)||(48735713-48735775)
chr4 (20-102)||(49044600-49044682)
chr4 (20-105)||(7774200-7774285)
chr4 (43-103)||(49048993-49049053)
chr4 (20-103)||(7877344-7877427)
chr4 (46-108)||(33134223-33134285)
chr4 (20-126)||(45372428-45372534)
chr4 (47-107)||(48870162-48870222)
chr4 (47-107)||(48885848-48885908)
chr4 (46-105)||(7771026-7771085)
chr4 (46-105)||(7813102-7813161)
chr4 (46-105)||(7822591-7822650)
chr4 (20-109)||(7765239-7765328)
chr4 (46-102)||(49041535-49041591)
chr4 (46-105)||(7800259-7800318)
chr4 (46-105)||(7907947-7908006)
chr4 (46-101)||(33133663-33133718)
chr4 (20-102)||(7238091-7238173)
chr4 (47-105)||(7789711-7789769)
chr4 (47-109)||(48891027-48891089)
chr4 (44-109)||(48170984-48171049)
chr4 (44-107)||(48898342-48898405)
chr4 (50-105)||(48902572-48902627)
chr4 (47-99)||(48875474-48875526)
[»] chr8 (5 HSPs)
chr8 (20-109)||(15348480-15348569)
chr8 (46-132)||(12199902-12199988)
chr8 (46-132)||(12444330-12444416)
chr8 (46-132)||(12194896-12194982)
chr8 (46-132)||(12439324-12439410)
[»] chr6 (1 HSPs)
chr6 (43-109)||(21015394-21015460)
[»] scaffold0508 (1 HSPs)
scaffold0508 (46-109)||(11880-11943)
[»] chr3 (4 HSPs)
chr3 (46-109)||(11024934-11024997)
chr3 (46-105)||(11006359-11006418)
chr3 (46-109)||(11015922-11015985)
chr3 (46-105)||(47452304-47452363)


Alignment Details
Target: chr5 (Bit Score: 182; Significance: 1e-98; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 29712840 - 29713021
Alignment:
Q  20 aaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaagga 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712840 aaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaagga 29712939  T
Q  120 tttgaatgattaactcaatagatagatattgctctgtcttcttcatcgtctccattcacacgtttcctcctttgccaatatt 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712940 tttgaatgattaactcaatagatagatattgctctgtcttcttcatcgtctccattcacacgtttcctcctttgccaatatt 29713021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 158
Target Start/End: Complemental strand, 29695859 - 29695721
Alignment:
Q  20 aaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaagga 119  Q
    |||||||||||||| || | || |||||| |||||||| |||||||||||||||||||| |||||||||||||||||||| || |||||| |||| ||||    
T  29695859 aaatgtgaatttgcaaagtgaggttgagatataagagataaccataacttacaaacgcatttgaaacgaataagagacttgactggtaaccttaatagga 29695760  T
Q  120 tttgaatgattaactcaatagatagatattgctctgtct 158  Q
    |||||||||||||||||| ||  ||||||  ||||||||    
T  29695759 tttgaatgattaactcaaaaggaagatatgtctctgtct 29695721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 138
Target Start/End: Complemental strand, 29687758 - 29687640
Alignment:
Q  20 aaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaagga 119  Q
    ||||| |||||||| || | || |||||| || |||||||||||  |||||||||| |||||||| || |||||||||||||| |||||| ||| |||||    
T  29687758 aaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcactggtaactttagaagga 29687659  T
Q  120 tttgaatgattaactcaat 138  Q
    |||||||||| || |||||    
T  29687658 tttgaatgatcaattcaat 29687640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 44 - 113
Target Start/End: Original strand, 42562726 - 42562795
Alignment:
Q  44 tgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacatta 113  Q
    |||||||| |||||||||||  ||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  42562726 tgagagattagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtaacatta 42562795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 47 - 109
Target Start/End: Complemental strand, 1812105 - 1812043
Alignment:
Q  47 gagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 109  Q
    ||||||||||||||||||||||||||||| || ||| |||| || ||| ||||||| ||||||    
T  1812105 gagataagagaaaaccataacttacaaacccatttggaacgtatgagatacttcactggtaac 1812043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 178699 - 178638
Alignment:
Q  47 gagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaa 108  Q
    ||||| ||||| |||||  |||||||||| || |||||||||||||||||||| || |||||    
T  178699 gagatgagagataaccaagacttacaaacacatttgaaacgaataagagacttaactggtaa 178638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 24309884 - 24309796
Alignment:
Q  20 aaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaa 108  Q
    |||||||||||||| || | ||| | ||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||    
T  24309884 aaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaaccggtaa 24309796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 47 - 122
Target Start/End: Complemental strand, 24322142 - 24322067
Alignment:
Q  47 gagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggattt 122  Q
    |||||||||||||||||  ||||||||||||| |||||||||||||||||||||||| | ||| ||| ||||||||    
T  24322142 gagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagacttcaccagcaaccttagaaggattt 24322067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 24340095 - 24340032
Alignment:
Q  46 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 109  Q
    ||||||||| ||||||||| ||||||||||  | |||||||||||||||||||| |||||||||    
T  24340095 agagataagtgaaaaccatgacttacaaacagatttgaaacgaataagagacttaaccggtaac 24340032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 24415514 - 24415456
Alignment:
Q  50 ataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaa 108  Q
    ||||||||||||||  |||||| |||||| |||||||||||||||||||| ||||||||    
T  24415514 ataagagaaaaccaagacttacgaacgcatttgaaacgaataagagacttaaccggtaa 24415456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 24366835 - 24366787
Alignment:
Q  47 gagataagagaaaaccataacttacaaacgcacttgaaacgaataagag 95  Q
    |||||||||||||||||| |||| ||||| || ||||||||||| ||||    
T  24366835 gagataagagaaaaccatgacttgcaaacacatttgaaacgaatcagag 24366787  T

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Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 47 - 126
Target Start/End: Original strand, 48156825 - 48156904
Alignment:
Q  47 gagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggatttgaat 126  Q
    |||||||||||||||||  |||||||||||||||||||||| | |||||||||||||||||||  |||||||||||||||    
T  48156825 gagataagagaaaaccaagacttacaaacgcacttgaaacgtagaagagacttcaccggtaaccataaaaggatttgaat 48156904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 45 - 123
Target Start/End: Original strand, 45366617 - 45366695
Alignment:
Q  45 gagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggatttg 123  Q
    |||||||||||||||||||  |||||||||||||||||||||| |||||||||||||| |||||| |||  ||||||||    
T  45366617 gagagataagagaaaaccaatacttacaaacgcacttgaaacgtataagagacttcactggtaaccttagtaggatttg 45366695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 48148080 - 48148161
Alignment:
Q  44 tgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggatttgaa 125  Q
    ||||||||||||||||||||  ||||||| || || ||||||||||||||||||||||| |||||| || ||||||||||||    
T  48148080 tgagagataagagaaaaccaagacttacagacacatttgaaacgaataagagacttcactggtaaccttgaaaggatttgaa 48148161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 48862924 - 48862859
Alignment:
Q  44 tgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 109  Q
    ||||||||||||||||||||  |||| |||||||| ||||||||||||||||||||||||||||||    
T  48862924 tgagagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcaccggtaac 48862859  T

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Target: chr4; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 7904739 - 7904657
Alignment:
Q  20 aaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcac 102  Q
    |||||||||||||| || | ||  | |||||||||||||||||||||||||||||| || |||||||| ||||||||||||||    
T  7904739 aaatgtgaatttgcaaagtgaggatcagagataagagaaaaccataacttacaaacacatttgaaacgtataagagacttcac 7904657  T

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Target: chr4; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 47 - 109
Target Start/End: Original strand, 48735713 - 48735775
Alignment:
Q  47 gagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 109  Q
    |||||||||||||||||  |||||||||| || ||||||||||||||||||||||||||||||    
T  48735713 gagataagagaaaaccaagacttacaaacacatttgaaacgaataagagacttcaccggtaac 48735775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 49044600 - 49044682
Alignment:
Q  20 aaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcac 102  Q
    |||||||||||||| || |  | ||||||||||||||||||||||||||||||||| ||||||||||| | ||||||| ||||    
T  49044600 aaatgtgaatttgcaaagtgggtttgagagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcac 49044682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 7774200 - 7774285
Alignment:
Q  20 aaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 105  Q
    |||||||||||||| ||||  |  | |||||||||||||||||||| ||||||||| || |||||| |||||||||||||||||||    
T  7774200 aaatgtgaatttgcaaaatggggatcagagataagagaaaaccatagcttacaaacacatttgaaatgaataagagacttcaccgg 7774285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 49048993 - 49049053
Alignment:
Q  43 ttgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcacc 103  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| | ||||||| |||||    
T  49048993 ttgagagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcacc 49049053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 7877427 - 7877344
Alignment:
Q  20 aaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcacc 103  Q
    |||||||||||||| ||||  |  | |||||||||||||||||||| |||||||| ||| |||||||| |||||||||||||||    
T  7877427 aaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcacc 7877344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 33134223 - 33134285
Alignment:
Q  46 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaa 108  Q
    ||||||||||||||| ||   |||||||||||| |||||||||||||||||||||||||||||    
T  33134223 agagataagagaaaatcaaggcttacaaacgcatttgaaacgaataagagacttcaccggtaa 33134285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 45372428 - 45372534
Alignment:
Q  20 aaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaagga 119  Q
    |||||||||||||| |||| ||  | |||||||| |||||||||  |||||||||| || |||||||| ||||||||||||||||| ||| |||  || |    
T  45372428 aaatgtgaatttgcaaaatgaggatcagagataatagaaaaccaagacttacaaacacatttgaaacgtataagagacttcaccggcaaccttagtagaa 45372527  T
Q  120 tttgaat 126  Q
    |||||||    
T  45372528 tttgaat 45372534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 48870222 - 48870162
Alignment:
Q  47 gagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggta 107  Q
    ||||||||| |||||||  ||||||||||||| ||||||||||||||||| ||||||||||    
T  48870222 gagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggta 48870162  T

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Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 48885908 - 48885848
Alignment:
Q  47 gagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggta 107  Q
    ||||||||| |||||||  ||||||||||||| ||||||||||||||||| ||||||||||    
T  48885908 gagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggta 48885848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 7771085 - 7771026
Alignment:
Q  46 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 105  Q
    ||||||||||||||||||  ||||||||||||| |||||||  |||||||||||||||||    
T  7771085 agagataagagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccgg 7771026  T

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Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 7813161 - 7813102
Alignment:
Q  46 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 105  Q
    ||||||||||||||||||| | |||||||| ||||||||||| |||||| ||||||||||    
T  7813161 agagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccgg 7813102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 7822650 - 7822591
Alignment:
Q  46 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 105  Q
    ||||||||||||||||||| | |||||||| ||||||||||| |||||| ||||||||||    
T  7822650 agagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccgg 7822591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 7765328 - 7765239
Alignment:
Q  20 aaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 109  Q
    |||||||||||||| || | ||  | |||||||| |||||||||||||||||||| ||||||||||   |  ||||||||||||||||||    
T  7765328 aaatgtgaatttgcaaagtgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaac 7765239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 49041535 - 49041591
Alignment:
Q  46 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcac 102  Q
    ||||||||||||||||||  |||| |||||||| ||||||| |||||||||||||||    
T  49041535 agagataagagaaaaccaagacttgcaaacgcatttgaaacaaataagagacttcac 49041591  T

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Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 7800318 - 7800259
Alignment:
Q  46 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 105  Q
    ||||| ||||||||||||| | |||||||| ||||||||||| |||||| ||||||||||    
T  7800318 agagacaagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccgg 7800259  T

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Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 7908006 - 7907947
Alignment:
Q  46 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 105  Q
    ||||||||||||||||||| |||||| |||  ||||||||||  ||||||||||||||||    
T  7908006 agagataagagaaaaccatgacttacgaacagacttgaaacgtgtaagagacttcaccgg 7907947  T

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Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 101
Target Start/End: Complemental strand, 33133718 - 33133663
Alignment:
Q  46 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttca 101  Q
    |||||||||||||||||| | |||||||| | | ||||||||||||||||||||||    
T  33133718 agagataagagaaaaccaaagcttacaaatgaatttgaaacgaataagagacttca 33133663  T

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Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 7238091 - 7238173
Alignment:
Q  20 aaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcac 102  Q
    |||||||||||||| || | ||  | ||||||||||||||||||  |||||||||| || |||||||  ||||||||||||||    
T  7238091 aaatgtgaatttgcaaagtgagggtcagagataagagaaaaccaagacttacaaacacatttgaaacagataagagacttcac 7238173  T

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Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 47 - 105
Target Start/End: Complemental strand, 7789769 - 7789711
Alignment:
Q  47 gagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 105  Q
    ||||||| |||||||||  ||||||||||||| |||||||  |||||||||||||||||    
T  7789769 gagataaaagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccgg 7789711  T

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Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 47 - 109
Target Start/End: Complemental strand, 48891089 - 48891027
Alignment:
Q  47 gagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 109  Q
    |||| ||||||||||||  ||||||||||||| |||||||| ||||||||||| |||| ||||    
T  48891089 gagacaagagaaaaccaagacttacaaacgcatttgaaacgtataagagactttaccgataac 48891027  T

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Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 109
Target Start/End: Original strand, 48170984 - 48171049
Alignment:
Q  44 tgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 109  Q
    ||||||||||||| ||||||  |||||||||| || |||||||| | |||||||||||||| ||||    
T  48170984 tgagagataagagcaaaccaagacttacaaacacatttgaaacgtagaagagacttcaccgataac 48171049  T

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Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 48898405 - 48898342
Alignment:
Q  44 tgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggta 107  Q
    ||||||||||| || |||||  |||||||||| |||||||||||  ||||||||||||| ||||    
T  48898405 tgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagacttcacaggta 48898342  T

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Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 105
Target Start/End: Complemental strand, 48902627 - 48902572
Alignment:
Q  50 ataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 105  Q
    ||||||||||||||  |||||||||| || ||||||||||| |||||||| |||||    
T  48902627 ataagagaaaaccaagacttacaaacacatttgaaacgaatgagagactttaccgg 48902572  T

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Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 48875526 - 48875474
Alignment:
Q  47 gagataagagaaaaccataacttacaaacgcacttgaaacgaataagagactt 99  Q
    ||||| |||||||||||  |||| |||||||| ||||||||||| ||||||||    
T  48875526 gagatgagagaaaaccaagacttgcaaacgcatttgaaacgaattagagactt 48875474  T

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Target: chr8 (Bit Score: 54; Significance: 3e-22; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 15348569 - 15348480
Alignment:
Q  20 aaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 109  Q
    ||||||||||||||||| | ||  | ||||||||||||||||||  ||||||||||||| |||||||| |||||||||||||||||||||    
T  15348569 aaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagacttcaccggtaac 15348480  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 132
Target Start/End: Complemental strand, 12199988 - 12199902
Alignment:
Q  46 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggatttgaatgattaa 132  Q
    ||||||||||||||||||| |||||||||| || |||||||  | ||||||||||||||| ||| | |  |||||||||||||||||    
T  12199988 agagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaa 12199902  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 132
Target Start/End: Complemental strand, 12444416 - 12444330
Alignment:
Q  46 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggatttgaatgattaa 132  Q
    ||||||||||||||||||| |||||||||| || |||||||  | ||||||||||||||| ||| | |  |||||||||||||||||    
T  12444416 agagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaa 12444330  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 132
Target Start/End: Complemental strand, 12194982 - 12194896
Alignment:
Q  46 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggatttgaatgattaa 132  Q
    |||||||||||| |||||| ||||||||| ||| |||||||  | ||||||||||||||| ||| | |  |||||||||||||||||    
T  12194982 agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaa 12194896  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 132
Target Start/End: Complemental strand, 12439410 - 12439324
Alignment:
Q  46 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggatttgaatgattaa 132  Q
    |||||||||||| |||||| ||||||||| ||| |||||||  | ||||||||||||||| ||| | |  |||||||||||||||||    
T  12439410 agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaa 12439324  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 109
Target Start/End: Complemental strand, 21015460 - 21015394
Alignment:
Q  43 ttgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 109  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||| | ||||||| | |||||||||    
T  21015460 ttgagagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgaccggtaac 21015394  T

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Target: scaffold0508 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 11943 - 11880
Alignment:
Q  46 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 109  Q
    ||||||||||||||||||| ||||||||||| | |||||||| ||||||||||| | |||||||    
T  11943 agagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaatcggtaac 11880  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 11024934 - 11024997
Alignment:
Q  46 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 109  Q
    |||||||||||  |||||| ||||||||||||| |||||||| || ||||||||||||||||||    
T  11024934 agagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaac 11024997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 11006359 - 11006418
Alignment:
Q  46 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 105  Q
    |||||||||||  |||||| |||||||||| ||||||||||| ||||| |||||||||||    
T  11006359 agagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccgg 11006418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 11015922 - 11015985
Alignment:
Q  46 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 109  Q
    |||||||||||  ||| || ||||||||||||| |||||||| || ||||||||||||||||||    
T  11015922 agagataagagctaacaatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaac 11015985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 47452304 - 47452363
Alignment:
Q  46 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 105  Q
    ||||||||||||||||||| ||||| ||| ||||||||| || | |||||||||||||||    
T  47452304 agagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccgg 47452363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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