View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5576_high_5 (Length: 411)
Name: NF5576_high_5
Description: NF5576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5576_high_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 4809277 - 4809496
Alignment:
| Q |
1 |
tctactgataaaaggaaatgtccaagagatgtttggtggaaagatatgttcgtttgtatttcaacttcaagagggaaaatgaaggcatgattggaaacat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4809277 |
tctactgataaaaggaaatgtccaagagatgtttggtggaaagatatgttcgtttgtatttcaacttcatgagggaaaatgaaggcatgattggaaacat |
4809376 |
T |
|
| Q |
101 |
gactgaatttacaattacgtaaaaggtgactgtaacttgtgctaaaagagacatgttaataaatccataaataatactttatcttcaaaacaataattgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4809377 |
gactgaatttacaattacgtaaaaggtgactgtaacttgtgccaaaagagacatgttaataaatccataaataatacattatcttcaaaacaataattgt |
4809476 |
T |
|
| Q |
201 |
tgacattaaaactttatgga |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
4809477 |
tgacattaaaactttatgga |
4809496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 219 - 308
Target Start/End: Original strand, 4831722 - 4831811
Alignment:
| Q |
219 |
gagtaatattgtatcaataagattggagattagacactagacatatgtgaatataaacaaagttagtgcagacttttcttttttcatgta |
308 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
4831722 |
gagtaatattgtatcgataagattgaagattagacactagacatatgtgaatataaacaaagttagtgcaggcctttcttttttcatgta |
4831811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 274 - 365
Target Start/End: Original strand, 4834092 - 4834184
Alignment:
| Q |
274 |
aacaaagttagtgcagacttttcttttttcatgtataaatttcccaaacaatcaccaatctctgattgtaa-atgttaatataaagaaaataa |
365 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||| |
|
|
| T |
4834092 |
aacaaagttagtgcaggcctttcttttttcatgtaccaatttcccaaacaatcaccaatctctaattgtaacatgttaatatatagaaaataa |
4834184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 366 - 411
Target Start/End: Original strand, 4809490 - 4809535
Alignment:
| Q |
366 |
ttatgcaagttaattgggcaaggaattcaacaatgacagaagcaag |
411 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4809490 |
ttatggaagttaattgggcaaggaattcaacaatgacagaaacaag |
4809535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University