View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5576_high_7 (Length: 378)

Name: NF5576_high_7
Description: NF5576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5576_high_7
NF5576_high_7
[»] chr5 (2 HSPs)
chr5 (194-359)||(16608160-16608327)
chr5 (19-171)||(16608352-16608504)
[»] chr3 (9 HSPs)
chr3 (31-157)||(53525123-53525249)
chr3 (31-157)||(20197320-20197450)
chr3 (31-122)||(53511003-53511094)
chr3 (31-122)||(53514692-53514783)
chr3 (243-301)||(53525338-53525395)
chr3 (38-122)||(53548748-53548832)
chr3 (196-292)||(53511122-53511224)
chr3 (323-361)||(53549061-53549099)
chr3 (319-356)||(53525448-53525485)


Alignment Details
Target: chr5 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 194 - 359
Target Start/End: Complemental strand, 16608327 - 16608160
Alignment:
Q  194 ctagatctccactcaaactcttgaatttttagaaagttcaagctcaccacaatctgaatattccatgtatgaata--cctagattttcttttatcattaa 291  Q
    ||||||||||||||||||||| || |||||||||| ||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  16608327 ctagatctccactcaaactctggactttttagaaaattcaagcacaccacaatctgaatattccatgtatgaatatacctagattttcttttatcattaa 16608228  T
Q  292 ccacccagaatacctagattttcttttaacattacaagtgcaattctatatttctccttgacaaagat 359  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16608227 ccacccagaatacctatattttcttttaacattacaagtgcaattctatatttctccttgacaaagat 16608160  T

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Target: chr5; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 19 - 171
Target Start/End: Complemental strand, 16608504 - 16608352
Alignment:
Q  19 gaaacatgtgatcttgccaagattgatcaaatggtcacattcttattttgattgtacaaaatgataggcataatagacattttaatacaatataaattcc 118  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16608504 gaaacatgtgatcttggcaagattgatcaaatgctcacattcttattttgattgtacaaaatgataggcataatagacattttaatacaatataaattcc 16608405  T
Q  119 aacaaattactaccataagaactcaaagaagtaaactaaaacctctttaattt 171  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  16608404 aacagattactaccataagaattcaaagaagtaaactaaaacctctttaattt 16608352  T

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Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 31 - 157
Target Start/End: Original strand, 53525123 - 53525249
Alignment:
Q  31 cttgccaagattgatcaaatggtcacattcttattttgattgtacaaaatgataggcataatagacattttaatacaatataaattccaacaaattacta 130  Q
    |||| |||||||||||||||| |||||||||| |||||| ||| |||||||||||||| ||| ||||| ||||| ||||||| |||||||||  ||||||    
T  53525123 cttggcaagattgatcaaatgctcacattcttcttttgactgttcaaaatgataggcagaatggacatgttaatgcaatatacattccaacagtttacta 53525222  T
Q  131 ccataagaactcaaagaagtaaactaa 157  Q
    ||| ||||| |||||||||||||||||    
T  53525223 ccacaagaattcaaagaagtaaactaa 53525249  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 31 - 157
Target Start/End: Original strand, 20197320 - 20197450
Alignment:
Q  31 cttgccaagattgatcaaatggtcacattcttattttgattgtacaaaatgataggcataatagacattttaatacaatat----aaattccaacaaatt 126  Q
    ||||||||| ||||||||||| |||||||||| |||||| ||| |||||||||||||||||| ||||||||||||||||||    |||||||||||  ||    
T  20197320 cttgccaagtttgatcaaatgctcacattcttcttttgactgttcaaaatgataggcataatggacattttaatacaatatactcaaattccaacagttt 20197419  T
Q  127 actaccataagaactcaaagaagtaaactaa 157  Q
    | ||||| ||||| | |||||| ||||||||    
T  20197420 agtaccacaagaattgaaagaactaaactaa 20197450  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 31 - 122
Target Start/End: Original strand, 53511003 - 53511094
Alignment:
Q  31 cttgccaagattgatcaaatggtcacattcttattttgattgtacaaaatgataggcataatagacattttaatacaatataaattccaaca 122  Q
    |||| |||||||||||||||| |||||||||| |||||| ||| |||||||||||| | | | |||||||||||||||||||||||||||||    
T  53511003 cttggcaagattgatcaaatgctcacattcttcttttgactgttcaaaatgataggaaaagtggacattttaatacaatataaattccaaca 53511094  T

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Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 31 - 122
Target Start/End: Original strand, 53514692 - 53514783
Alignment:
Q  31 cttgccaagattgatcaaatggtcacattcttattttgattgtacaaaatgataggcataatagacattttaatacaatataaattccaaca 122  Q
    |||| |||||||||||||||| |||||||||| |||||| ||| |||||||||||||| ||| ||  ||||||||||||||| |||||||||    
T  53514692 cttggcaagattgatcaaatgctcacattcttcttttgactgttcaaaatgataggcaaaatggaggttttaatacaatatagattccaaca 53514783  T

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Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 243 - 301
Target Start/End: Original strand, 53525338 - 53525395
Alignment:
Q  243 caatctgaatattccatgtatgaatacctagattttcttttatcattaaccacccagaa 301  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  53525338 caatctgaatattccatgtatgaatacctagattttcttttat-attaaccacccagaa 53525395  T

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Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 122
Target Start/End: Original strand, 53548748 - 53548832
Alignment:
Q  38 agattgatcaaatggtcacattcttattttgattgtacaaaatgataggcataatagacattttaatacaatataaattccaaca 122  Q
    |||||||||||||| |||||||||| ||| || ||| || |||| |||| | ||| |||||||||||||||||||||||||||||    
T  53548748 agattgatcaaatgctcacattcttctttggactgttcacaatggtaggaagaattgacattttaatacaatataaattccaaca 53548832  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 196 - 292
Target Start/End: Original strand, 53511122 - 53511224
Alignment:
Q  196 agatctccactcaaactcttgaattttt-agaaagttcaagctcaccacaatctgaatattccatgtatgaata-----cctagattttcttttatcatt 289  Q
    ||||||||||||||||||| || | ||| |||||||||||| |  |  ||||||||||||||||||||||||||      ||||||||||||||||||||    
T  53511122 agatctccactcaaactctggagtctttcagaaagttcaagtttcctgcaatctgaatattccatgtatgaatatgaatactagattttcttttatcatt 53511221  T
Q  290 aac 292  Q
    |||    
T  53511222 aac 53511224  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 361
Target Start/End: Original strand, 53549061 - 53549099
Alignment:
Q  323 ttacaagtgcaattctatatttctccttgacaaagatgc 361  Q
    |||||||||||||| ||||||||||||||||||| ||||    
T  53549061 ttacaagtgcaattatatatttctccttgacaaatatgc 53549099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 356
Target Start/End: Original strand, 53525448 - 53525485
Alignment:
Q  319 aacattacaagtgcaattctatatttctccttgacaaa 356  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  53525448 aacattacaagtggaattatatatttctccttgacaaa 53525485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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