View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5576_low_10 (Length: 334)

Name: NF5576_low_10
Description: NF5576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5576_low_10
NF5576_low_10
[»] chr8 (10 HSPs)
chr8 (1-290)||(11647422-11647711)
chr8 (59-176)||(33053638-33053756)
chr8 (58-146)||(19709737-19709825)
chr8 (77-182)||(27661999-27662104)
chr8 (102-146)||(30913259-30913303)
chr8 (59-186)||(28862681-28862809)
chr8 (113-186)||(18847247-18847320)
chr8 (113-186)||(22455319-22455392)
chr8 (113-186)||(32351997-32352070)
chr8 (113-186)||(32368658-32368731)
[»] chr7 (8 HSPs)
chr7 (59-161)||(17914328-17914429)
chr7 (59-185)||(4587680-4587807)
chr7 (67-190)||(14628986-14629110)
chr7 (113-178)||(18046285-18046350)
chr7 (113-186)||(41131744-41131817)
chr7 (109-186)||(12468737-12468815)
chr7 (113-186)||(28036985-28037058)
chr7 (122-186)||(9022756-9022820)
[»] chr6 (13 HSPs)
chr6 (59-194)||(3634199-3634335)
chr6 (59-186)||(4031249-4031376)
chr6 (110-160)||(16142371-16142421)
chr6 (59-186)||(6038729-6038858)
chr6 (59-163)||(22259454-22259559)
chr6 (54-186)||(28712138-28712269)
chr6 (113-184)||(17296420-17296491)
chr6 (69-146)||(16434125-16434203)
chr6 (125-186)||(242247-242308)
chr6 (109-178)||(1469472-1469541)
chr6 (113-186)||(24154371-24154444)
chr6 (114-178)||(9404563-9404627)
chr6 (114-186)||(16793101-16793173)
[»] chr3 (12 HSPs)
chr3 (59-182)||(1085484-1085601)
chr3 (59-186)||(17132460-17132591)
chr3 (58-186)||(25466241-25466369)
chr3 (113-186)||(15987393-15987466)
chr3 (113-191)||(14132297-14132375)
chr3 (113-186)||(53589328-53589402)
chr3 (113-186)||(4022945-4023018)
chr3 (113-153)||(5495372-5495412)
chr3 (113-169)||(7536350-7536405)
chr3 (109-145)||(8737455-8737491)
chr3 (109-145)||(9089693-9089729)
chr3 (94-137)||(39583974-39584018)
[»] chr2 (12 HSPs)
chr2 (59-139)||(31483239-31483320)
chr2 (59-140)||(31475529-31475611)
chr2 (59-160)||(35406071-35406173)
chr2 (59-188)||(25473213-25473344)
chr2 (59-186)||(31000112-31000235)
chr2 (59-186)||(20515759-20515886)
chr2 (63-191)||(19011828-19011957)
chr2 (67-186)||(21625152-21625272)
chr2 (113-186)||(17162213-17162286)
chr2 (61-130)||(20910493-20910562)
chr2 (109-146)||(23388945-23388982)
chr2 (113-186)||(29891521-29891594)
[»] chr1 (8 HSPs)
chr1 (58-194)||(4521802-4521939)
chr1 (78-154)||(14588738-14588814)
chr1 (59-191)||(24633958-24634090)
chr1 (109-162)||(25018463-25018516)
chr1 (68-194)||(44856001-44856126)
chr1 (113-186)||(16083476-16083549)
chr1 (58-182)||(24115428-24115553)
chr1 (59-146)||(28623184-28623272)
[»] chr5 (9 HSPs)
chr5 (66-190)||(28619453-28619577)
chr5 (78-176)||(39838751-39838850)
chr5 (113-183)||(21166395-21166465)
chr5 (109-154)||(22847841-22847886)
chr5 (113-186)||(22987549-22987622)
chr5 (59-179)||(10235814-10235934)
chr5 (101-183)||(21171016-21171095)
chr5 (59-185)||(16809342-16809469)
chr5 (111-140)||(23355477-23355506)
[»] chr4 (11 HSPs)
chr4 (59-176)||(41635611-41635729)
chr4 (61-182)||(6244143-6244264)
chr4 (59-188)||(5628027-5628156)
chr4 (66-161)||(24332752-24332847)
chr4 (109-175)||(26654333-26654399)
chr4 (63-146)||(16711228-16711311)
chr4 (110-186)||(9354678-9354754)
chr4 (103-153)||(10398657-10398707)
chr4 (59-127)||(42454556-42454625)
chr4 (59-186)||(14540324-14540452)
chr4 (113-161)||(16674917-16674965)
[»] scaffold0014 (1 HSPs)
scaffold0014 (109-161)||(191961-192013)
[»] scaffold0167 (1 HSPs)
scaffold0167 (115-169)||(735-789)


Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 11647711 - 11647422
Alignment:
Q  1 tagtgtttgagtgtagtataatttgattcttaatacacaagttgtcactccatcatactgtttaccggtgttcttggtaaacaagaagactaattttaaa 100  Q
    |||||||||||| ||||||||||||| |||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  11647711 tagtgtttgagtatagtataatttgactcttaatacacaagtcatcactccatcattctgtttaccggtgttcttggtaaacaagaagactaatcttaaa 11647612  T
Q  101 agttgcttgcatgatcaaactagaaatcctaggacatgttatgcaaattttttctagaaaatggatgaacgttcatcatattcataagtttgttcgacat 200  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||   ||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  11647611 agttgcttgcatgatcaaactagaaatcctaggacatgttctacaaaaaatttctagaaaatgtatgaatgttcatcatattcataagtttgttcgacat 11647512  T
Q  201 aaataacaaggacgtttaaagttcaagtaacaaaagactttgagtttaaaggcaaagaaatttaaagaaagtaaattgcattgatttaat 290  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  11647511 aaataacaaggatgtttaaagttcaagtaataaaagactttgagtttaaaggcaaagaaatttaaagaaagtaaattgcattgctttaat 11647422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 176
Target Start/End: Original strand, 33053638 - 33053756
Alignment:
Q  59 tgtttaccggtgttcttggtaaacaagaagactaattttaaaa-gttgcttgcatgatcaaactagaaatcctaggacatgttatgcaaattttttctag 157  Q
    |||||||||||||| ||||||||||| ||||||| |||||||  ||| |||||| ||||||||||||||||||||| |||||| |||||   ||||||||    
T  33053638 tgtttaccggtgtttttggtaaacaataagactagttttaaattgttacttgcaggatcaaactagaaatcctagggcatgttttgcaatgattttctag 33053737  T
Q  158 aaaatggatgaacgttcat 176  Q
    |||||  ||||| ||||||    
T  33053738 aaaatatatgaatgttcat 33053756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 146
Target Start/End: Complemental strand, 19709825 - 19709737
Alignment:
Q  58 ctgtttaccggtgttcttggtaaacaagaagactaattttaaaagttgcttgcatgatcaaactagaaatcctaggacatgttatgcaa 146  Q
    ||||||||||||||| ||||||||||||||| |||||||| |   ||||  ||| |||||||| | ||||||||||||||||| |||||    
T  19709825 ctgtttaccggtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaa 19709737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 77 - 182
Target Start/End: Original strand, 27661999 - 27662104
Alignment:
Q  77 gtaaacaagaagactaattttaaaagttgcttgcatgatcaaactagaaatcctaggacatgttatgcaaa-ttttttctagaaaatggatgaacgttca 175  Q
    |||||||||||||||| ||||||||||| | || | ||||||||||||||| |||  ||||||| | |||| |||||||| ||||||| ||||| |||||    
T  27661999 gtaaacaagaagactagttttaaaagttacctgtaggatcaaactagaaattctaatacatgttgtacaaagttttttct-gaaaatgtatgaatgttca 27662097  T
Q  176 tcatatt 182  Q
    | |||||    
T  27662098 ttatatt 27662104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 30913303 - 30913259
Alignment:
Q  102 gttgcttgcatgatcaaactagaaatcctaggacatgttatgcaa 146  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||    
T  30913303 gttgcttgcatgatcaaactagaaatcctagaacatgttgtgcaa 30913259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 186
Target Start/End: Complemental strand, 28862809 - 28862681
Alignment:
Q  59 tgtttaccggtgttcttggtaaacaagaagactaattttaaaa-gttgcttgcatgatcaaactagaaatcctaggacatgttatgcaaattttttctag 157  Q
    |||||||  ||||| ||||||||||| |  |||| |||| ||| ||| ||||||||| |||| ||||||||||||| |||||| |||||   ||||  |     
T  28862809 tgtttactagtgtttttggtaaacaatataactagttttcaaatgttacttgcatgaccaaattagaaatcctagggcatgttgtgcaatcgtttttcac 28862710  T
Q  158 aaaatggatgaacgttcatcatattcata 186  Q
    |||||  ||||| ||||||||||||||||    
T  28862709 aaaatacatgaatgttcatcatattcata 28862681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 186
Target Start/End: Original strand, 18847247 - 18847320
Alignment:
Q  113 gatcaaactagaaatcctaggacatgttatgcaaattttttctagaaaatggatgaacgttcatcatattcata 186  Q
    ||||||||||||||||||| |||||||| |||||  |||||| | |||||  ||||| |||||  |||||||||    
T  18847247 gatcaaactagaaatcctatgacatgttgtgcaatctttttccaaaaaatacatgaatgttcaatatattcata 18847320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 186
Target Start/End: Complemental strand, 22455392 - 22455319
Alignment:
Q  113 gatcaaactagaaatcctaggacatgttatgcaaattttttctagaaaatggatgaacgttcatcatattcata 186  Q
    |||||||| ||||||||||||| ||||| |||||  |||||| | ||| |  ||||| ||||||||||||||||    
T  22455392 gatcaaaccagaaatcctaggatatgttgtgcaatctttttccaaaaagtacatgaatgttcatcatattcata 22455319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 186
Target Start/End: Original strand, 32351997 - 32352070
Alignment:
Q  113 gatcaaactagaaatcctaggacatgttatgcaaattttttctagaaaatggatgaacgttcatcatattcata 186  Q
    |||||||| ||||||||||||||||||| ||  |  |||||||| |||||  ||||| |||| |||||||||||    
T  32351997 gatcaaaccagaaatcctaggacatgttgtgacatctttttctataaaatacatgaatgttcgtcatattcata 32352070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 186
Target Start/End: Original strand, 32368658 - 32368731
Alignment:
Q  113 gatcaaactagaaatcctaggacatgttatgcaaattttttctagaaaatggatgaacgttcatcatattcata 186  Q
    |||||||| ||||||||||||||||||| ||  |  |||||||| |||||  ||||| |||| |||||||||||    
T  32368658 gatcaaaccagaaatcctaggacatgttgtgacatctttttctataaaatacatgaatgttcgtcatattcata 32368731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 59 - 161
Target Start/End: Original strand, 17914328 - 17914429
Alignment:
Q  59 tgtttaccggtgttcttggtaaacaagaagactaattttaaaagttgcttgcatgatcaaactagaaatcctaggacatgttatgcaaattttttctaga 158  Q
    |||||||||||||| |||||||||||||  |||||||||||||||| |||||| || |||||||||||||||||||||||||||||||  |||||| |||    
T  17914328 tgtttaccggtgtttttggtaaacaagac-actaattttaaaagtttcttgcaggaccaaactagaaatcctaggacatgttatgcaatgtttttccaga 17914426  T
Q  159 aaa 161  Q
    |||    
T  17914427 aaa 17914429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 185
Target Start/End: Original strand, 4587680 - 4587807
Alignment:
Q  59 tgtttaccggtgttcttggtaaacaagaagactaattttaaaa-gttgcttgcatgatcaaactagaaatcctaggacatgttatgcaaattttttctag 157  Q
    |||||||||||||| ||||||||||| | ||||| |||| ||| |||||||||| ||| |||||||||||| ||| ||||||| ||| |  |||||  ||    
T  4587680 tgtttaccggtgtttttggtaaacaatatgactagtttttaaacgttgcttgcaagattaaactagaaatcgtagcacatgttgtgcgatcttttttcag 4587779  T
Q  158 aaaatggatgaacgttcatcatattcat 185  Q
    ||||||  |||| |||||||||||||||    
T  4587780 aaaatgtttgaatgttcatcatattcat 4587807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 190
Target Start/End: Complemental strand, 14629110 - 14628986
Alignment:
Q  67 ggtgttcttggtaaacaagaaga-ctaattttaaaagttgcttgcatgatcaaactagaaatcctaggacatgttatgcaaattttttctagaaaatgga 165  Q
    ||||||||||||| ||||||| | ||| |||| || ||| |||||| ||| ||||||||||| ||||||||| || |||||  ||||||   |||||| |    
T  14629110 ggtgttcttggtatacaagaaaaactagtttttaatgttacttgcaggattaaactagaaattctaggacatattgtgcaaggtttttcctcaaaatgta 14629011  T
Q  166 tgaacgttcatcatattcataagtt 190  Q
    |||| ||||||||||||||| ||||    
T  14629010 tgaatgttcatcatattcatgagtt 14628986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 178
Target Start/End: Original strand, 18046285 - 18046350
Alignment:
Q  113 gatcaaactagaaatcctaggacatgttatgcaaattttttctagaaaatggatgaacgttcatca 178  Q
    ||||||||||||||| |||||||||||| |||||| |||||| |||||| |  |||||||||||||    
T  18046285 gatcaaactagaaatactaggacatgttgtgcaaagtttttccagaaaaagagtgaacgttcatca 18046350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 186
Target Start/End: Original strand, 41131744 - 41131817
Alignment:
Q  113 gatcaaactagaaatcctaggacatgttatgcaaattttttctagaaaatggatgaacgttcatcatattcata 186  Q
    ||||||| ||||||| |||||| ||||| |||||| |||||||||||| ||  ||||||||||||| |||||||    
T  41131744 gatcaaattagaaattctaggatatgttgtgcaaagtttttctagaaagtgagtgaacgttcatcaaattcata 41131817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 186
Target Start/End: Original strand, 12468737 - 12468815
Alignment:
Q  109 gcatgatcaaactagaaatcctaggacatgttatgcaa-attttttctagaaaatggatgaacgttcatcatattcata 186  Q
    ||||| |||| | |||||||||||||||||||||||||  ||||||| | |||||  ||||| ||||||||||||||||    
T  12468737 gcatggtcaatccagaaatcctaggacatgttatgcaatcttttttccataaaatatatgaatgttcatcatattcata 12468815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 186
Target Start/End: Original strand, 28036985 - 28037058
Alignment:
Q  113 gatcaaactagaaatcctaggacatgttatgcaaattttttctagaaaatggatgaacgttcatcatattcata 186  Q
    |||||||  ||||||| ||||| ||||| |||||  ||||| |||||| || ||||| ||||||||||||||||    
T  28036985 gatcaaatcagaaatcttaggatatgttgtgcaatctttttttagaaagtgtatgaatgttcatcatattcata 28037058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 9022820 - 9022756
Alignment:
Q  122 agaaatcctaggacatgttatgcaaattttttctagaaaatggatgaacgttcatcatattcata 186  Q
    ||||||||||||||||||| |||||  |||||  | ||||||  ||||||||||||| |||||||    
T  9022820 agaaatcctaggacatgttgtgcaatgtttttacaaaaaatgagtgaacgttcatcaaattcata 9022756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 9e-24; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 59 - 194
Target Start/End: Original strand, 3634199 - 3634335
Alignment:
Q  59 tgtttaccggtgttcttggtaaacaagaagactaattttaaa-agttgcttgcatgatcaaactagaaatcctaggacatgttatgcaaattttttctag 157  Q
    |||||||||||||| ||||||||||| ||||||| ||||||| | || |||||| ||||||||| ||| |||||||||||||| |||||   ||||  ||    
T  3634199 tgtttaccggtgtttttggtaaacaataagactagttttaaataattacttgcaggatcaaactggaagtcctaggacatgttgtgcaatgatttttcag 3634298  T
Q  158 aaaatggatgaacgttcatcatattcataagtttgtt 194  Q
    |||||| |||||| |||||||||||||| | ||||||    
T  3634299 aaaatgtatgaacattcatcatattcatgaatttgtt 3634335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 186
Target Start/End: Complemental strand, 4031376 - 4031249
Alignment:
Q  59 tgtttaccggtgttcttggtaaacaagaagactaattttaaaagttgcttgcatgatcaaactagaaatcctaggacatgttatgcaaattttttctaga 158  Q
    |||||||||||||| |||||||||||||||| ||||||| |    | |  |||||||||||| ||||||||||| ||||||| |||||  ||||||||||    
T  4031376 tgtttaccggtgtttttggtaaacaagaagaataattttgattactacaagcatgatcaaaccagaaatcctagaacatgttgtgcaatctttttctaga 4031277  T
Q  159 aaatggatgaacgttcatcatattcata 186  Q
    || ||   ||| ||||||||||||||||    
T  4031276 aagtgctcgaatgttcatcatattcata 4031249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 110 - 160
Target Start/End: Original strand, 16142371 - 16142421
Alignment:
Q  110 catgatcaaactagaaatcctaggacatgttatgcaaattttttctagaaa 160  Q
    ||||||||||||||||||||||||||||||| |||||| |||||| |||||    
T  16142371 catgatcaaactagaaatcctaggacatgttgtgcaaagtttttccagaaa 16142421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 186
Target Start/End: Original strand, 6038729 - 6038858
Alignment:
Q  59 tgtttaccggtgttcttggtaaa-caagaagactaattttaaa-agttgcttgcatgatcaaactagaaatcctaggacatgttatgcaaattttttcta 156  Q
    ||||| || ||||| |||||||| ||| | ||||| ||||||| | || |||||| |||||||||||||||||||||  || || |||||  |||||| |    
T  6038729 tgtttgcctgtgtttttggtaaaacaatatgactagttttaaataattacttgcaggatcaaactagaaatcctagggaatattgtgcaatctttttcca 6038828  T
Q  157 gaaaatggatgaacgttcatcatattcata 186  Q
    |||||||  |||| ||||||||||||||||    
T  6038829 gaaaatgcttgaatgttcatcatattcata 6038858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 163
Target Start/End: Complemental strand, 22259559 - 22259454
Alignment:
Q  59 tgtttaccggtgttcttggtaaacaagaagactaattttaaa-agttgcttgcatgatcaaactagaaatcctaggacatgttatgcaaattttttctag 157  Q
    ||||||||| |||| || |||||||| ||||||| ||||||| | ||||||||| ||| |||||||||||||||  ||||||| |||||  |||||  ||    
T  22259559 tgtttaccgctgttttttgtaaacaataagactagttttaaataattgcttgcaggatgaaactagaaatcctataacatgttgtgcaatgttttttcag 22259460  T
Q  158 aaaatg 163  Q
    ||||||    
T  22259459 aaaatg 22259454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 54 - 186
Target Start/End: Original strand, 28712138 - 28712269
Alignment:
Q  54 catactgtttaccggtgttcttggtaaacaagaagactaattttaaaagttgcttgcatgatcaaactagaaatcctaggacatgttatgcaaatttttt 153  Q
    |||| |||||||||||||| |||||||||||  |||||| ||| |  | || |  ||| |||||||| ||||||||||||||||||| |||||  |||||    
T  28712138 catattgtttaccggtgtttttggtaaacaacgagactagtttgatta-ttacaggcaagatcaaaccagaaatcctaggacatgttgtgcaatcttttt 28712236  T
Q  154 ctagaaaatggatgaacgttcatcatattcata 186  Q
    | | ||| || ||||| |||||| |||||||||    
T  28712237 ccataaagtgtatgaatgttcataatattcata 28712269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 17296491 - 17296420
Alignment:
Q  113 gatcaaactagaaatcctaggacatgttatgcaaattttttctagaaaatggatgaacgttcatcatattca 184  Q
    |||||||| ||||||||||  ||||||| ||||||||||||| |||| |||  ||| ||||||||| |||||    
T  17296491 gatcaaacaagaaatcctacaacatgttgtgcaaattttttccagaatatgagtgagcgttcatcaaattca 17296420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 16434125 - 16434203
Alignment:
Q  69 tgttcttggtaaacaagaagactaattttaaaa-gttgcttgcatgatcaaactagaaatcctaggacatgttatgcaa 146  Q
    |||| ||| ||||||| ||||||| |||||||| |||||||||| ||| |||||||||||| || || ||||| |||||    
T  16434125 tgtttttgataaacaataagactagttttaaaatgttgcttgcaggattaaactagaaatcatatgatatgttgtgcaa 16434203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 242308 - 242247
Alignment:
Q  125 aatcctaggacatgttatgcaaattttttctagaaaatggatgaacgttcatcatattcata 186  Q
    |||||||||||||||| |||||  |||||| ||||| ||  |||| ||||||||||||||||    
T  242308 aatcctaggacatgttgtgcaatatttttccagaaagtgcttgaatgttcatcatattcata 242247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 1469541 - 1469472
Alignment:
Q  109 gcatgatcaaactagaaatcctaggacatgttatgcaaattttttctagaaaatggatgaacgttcatca 178  Q
    |||||||||||||||||||| ||| |||| || || ||  ||||| ||||||||| ||||| ||||||||    
T  1469541 gcatgatcaaactagaaatcttagaacatattgtgaaatgtttttgtagaaaatgtatgaatgttcatca 1469472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 186
Target Start/End: Complemental strand, 24154444 - 24154371
Alignment:
Q  113 gatcaaactagaaatcctaggacatgttatgcaaattttttctagaaaatggatgaacgttcatcatattcata 186  Q
    |||||||| | |||||||||||| |||| |||||  |||||| |||||||  ||||  ||||||||||||||||    
T  24154444 gatcaaaccataaatcctaggacttgttgtgcaatctttttccagaaaattcatgagtgttcatcatattcata 24154371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 9404563 - 9404627
Alignment:
Q  114 atcaaactagaaatcctaggacatgttatgcaaattttttctagaaaatggatgaacgttcatca 178  Q
    ||||||| ||||||| ||||||||||| |||||| |||||| |||||| | |||  |||||||||    
T  9404563 atcaaaccagaaatcgtaggacatgttgtgcaaagtttttccagaaaaagaatgttcgttcatca 9404627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 186
Target Start/End: Original strand, 16793101 - 16793173
Alignment:
Q  114 atcaaactagaaatcctaggacatgttatgcaaattttttctagaaaatggatgaacgttcatcatattcata 186  Q
    ||||||| |||||  |||||||| ||| |||||| |||||||||||| ||  | ||||||||||| |||||||    
T  16793101 atcaaacaagaaagtctaggacacgttgtgcaaagtttttctagaaattgagtaaacgttcatcaaattcata 16793173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 59 - 182
Target Start/End: Original strand, 1085484 - 1085601
Alignment:
Q  59 tgtttaccggtgttcttggtaaacaagaagactaattttaaaagttgcttgcatgatcaaactagaaatcctaggacatgttatgcaaattttttctaga 158  Q
    |||||||||||||| ||||||||||| || ||||||||||||      ||||| |||||||||||||||||||||||||||| |||||   |||||||||    
T  1085484 tgtttaccggtgtttttggtaaacaataaaactaattttaaa------ttgcaggatcaaactagaaatcctaggacatgttgtgcaatgattttctaga 1085577  T
Q  159 aaatggatgaacgttcatcatatt 182  Q
    ||||  ||||| ||||||||||||    
T  1085578 aaatatatgaatgttcatcatatt 1085601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 59 - 186
Target Start/End: Original strand, 17132460 - 17132591
Alignment:
Q  59 tgtttaccggtgttcttggtaaacaagaagactaattttaaaa-gttgcttgcatgatcaaactagaaatcctaggacatgttatgcaa---attttttc 154  Q
    |||||||  ||||| ||||||||||| ||||||| |||||||| |||||||| | |||||||||| ||||| |||  ||||||||||||    ||||||     
T  17132460 tgtttacttgtgtttttggtaaacaataagactagttttaaaatgttgcttgtaggatcaaactataaatcatagagcatgttatgcaatctttttttta 17132559  T
Q  155 tagaaaatggatgaacgttcatcatattcata 186  Q
    ||||||||  |||||  |||||||||||||||    
T  17132560 tagaaaatacatgaatattcatcatattcata 17132591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 186
Target Start/End: Original strand, 25466241 - 25466369
Alignment:
Q  58 ctgtttaccggtgttcttggtaaacaagaagactaattttaaaagttgcttgcatgatcaaactagaaatcctaggacatgttatgcaaattttttctag 157  Q
    ||||||||||||||| |||||||| || | ||||| |||| |   || |  ||| |||||||||  ||||||||||||||||| |||||  |||| ||||    
T  25466241 ctgtttaccggtgtttttggtaaataatatgactagttttgattattacaagcaggatcaaactgaaaatcctaggacatgttttgcaatcttttcctag 25466340  T
Q  158 aaaatggatgaacgttcatcatattcata 186  Q
    |||||  ||||| ||||||||||||||||    
T  25466341 aaaatatatgaatgttcatcatattcata 25466369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 186
Target Start/End: Original strand, 15987393 - 15987466
Alignment:
Q  113 gatcaaactagaaatcctaggacatgttatgcaaattttttctagaaaatggatgaacgttcatcatattcata 186  Q
    ||||||||||||||| |||||||||||| |||||  |||||| | |||||  ||||| ||||||||| ||||||    
T  15987393 gatcaaactagaaattctaggacatgttgtgcaatctttttccataaaatatatgaatgttcatcattttcata 15987466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 191
Target Start/End: Complemental strand, 14132375 - 14132297
Alignment:
Q  113 gatcaaactagaaatcctaggacatgttatgcaaattttttctagaaaatggatgaacgttcatcatattcataagttt 191  Q
    ||||||||||||||||| |||||||||| |||||  |||||| | ||| ||  |||| |||||||| ||||||| ||||    
T  14132375 gatcaaactagaaatccaaggacatgttgtgcaatgtttttccaaaaagtgagtgaatgttcatcaaattcataggttt 14132297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 186
Target Start/End: Complemental strand, 53589402 - 53589328
Alignment:
Q  113 gatcaaactagaaatcctaggacatgttatgcaa-attttttctagaaaatggatgaacgttcatcatattcata 186  Q
    |||||||| |||||||||||||||| || |||||  ||||||  |||||||  ||||| ||||||||||||||||    
T  53589402 gatcaaaccagaaatcctaggacattttgtgcaatctttttttcagaaaatacatgaatgttcatcatattcata 53589328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 186
Target Start/End: Complemental strand, 4023018 - 4022945
Alignment:
Q  113 gatcaaactagaaatcctaggacatgttatgcaaattttttctagaaaatggatgaacgttcatcatattcata 186  Q
    |||||||| |||| || || |||||||| |||||  |||||||| |||||  ||||| ||||||||||||||||    
T  4023018 gatcaaaccagaattcttatgacatgttgtgcaatctttttctaaaaaatacatgaatgttcatcatattcata 4022945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 153
Target Start/End: Original strand, 5495372 - 5495412
Alignment:
Q  113 gatcaaactagaaatcctaggacatgttatgcaaatttttt 153  Q
    |||||||| ||||||||||||||||||| |||||| |||||    
T  5495372 gatcaaaccagaaatcctaggacatgttgtgcaaagttttt 5495412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 169
Target Start/End: Complemental strand, 7536405 - 7536350
Alignment:
Q  113 gatcaaactagaaatcctaggacatgttatgcaaattttttctagaaaatggatgaa 169  Q
    |||||||||||||||| || |||||||| |||||  ||||||||||||||| |||||    
T  7536405 gatcaaactagaaatc-tatgacatgttctgcaatctttttctagaaaatgtatgaa 7536350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 145
Target Start/End: Complemental strand, 8737491 - 8737455
Alignment:
Q  109 gcatgatcaaactagaaatcctaggacatgttatgca 145  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  8737491 gcatgatcaaactagaaattctaggacatgttgtgca 8737455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 145
Target Start/End: Complemental strand, 9089729 - 9089693
Alignment:
Q  109 gcatgatcaaactagaaatcctaggacatgttatgca 145  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  9089729 gcatgatcaaactagaaattctaggacatgttgtgca 9089693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 137
Target Start/End: Complemental strand, 39584018 - 39583974
Alignment:
Q  94 ttttaaaa-gttgcttgcatgatcaaactagaaatcctaggacat 137  Q
    |||||||| ||| ||||||||||||||||||||||| ||||||||    
T  39584018 ttttaaaatgttacttgcatgatcaaactagaaatcttaggacat 39583974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 31483239 - 31483320
Alignment:
Q  59 tgtttaccggtgttcttggtaaacaagaagactaatttt-aaaagttgcttgcatgatcaaactagaaatcctaggacatgt 139  Q
    ||||| ||||| || ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||    
T  31483239 tgtttgccggtatttttggtaaacaagaagactagtttttaaaagttgcttgcatgatcaaactagaaatcctatgacatgt 31483320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 59 - 140
Target Start/End: Original strand, 31475529 - 31475611
Alignment:
Q  59 tgtttaccggtgttcttggtaaacaagaagactaatttt-aaaagttgcttgcatgatcaaactagaaatcctaggacatgtt 140  Q
    |||||||  ||||| ||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||| ||||||||    
T  31475529 tgtttactagtgtttttggtaaacaagaagactagtttttaaaagttgcttgcatgatcaaagtagaaatcctaagacatgtt 31475611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 59 - 160
Target Start/End: Complemental strand, 35406173 - 35406071
Alignment:
Q  59 tgtttaccggtgttcttggtaaacaagaagactaattttaaaa-gttgcttgcatgatcaaactagaaatcctaggacatgttatgcaaattttttctag 157  Q
    ||||||||||| || ||||||||||| ||||||| |||||||| |||||||||| ||||| | |||||||| ||||||||||| ||||||| ||||| ||    
T  35406173 tgtttaccggtttttttggtaaacaataagactagttttaaaacgttgcttgcaggatcagaatagaaatcgtaggacatgttgtgcaaatgttttccag 35406074  T
Q  158 aaa 160  Q
    |||    
T  35406073 aaa 35406071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 188
Target Start/End: Original strand, 25473213 - 25473344
Alignment:
Q  59 tgtttaccggtgttcttggtaaacaagaagactaattttaaaa-gttgcttgcatgatcaaactagaaatcctaggacatgttatgcaa--attttttct 155  Q
    |||| ||||||||| |||||||||||||  |||| |||||||| ||| ||||||||||||||||||||||||||||||||||| |||||   ||||||      
T  25473213 tgttaaccggtgtttttggtaaacaagac-actagttttaaaatgttacttgcatgatcaaactagaaatcctaggacatgttgtgcaatgttttttttc 25473311  T
Q  156 agaaaatggatgaacgttcatcatattcataag 188  Q
    ||||||||  |||| ||||||||| ||| ||||    
T  25473312 agaaaatgtttgaatgttcatcatgttcttaag 25473344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 186
Target Start/End: Complemental strand, 31000235 - 31000112
Alignment:
Q  59 tgtttaccggtgttcttggtaaacaagaagactaattttaaaa-gttgcttgcatgatcaaactagaaatcctaggacatgttatgcaaattttttctag 157  Q
    |||||||| ||||| ||||||||||| |||| || |||||||| ||| |||     |||||||||||||||||||| |||||| ||||   |||||| ||    
T  31000235 tgtttacctgtgtttttggtaaacaataagattagttttaaaatgttactt-----atcaaactagaaatcctagggcatgttgtgcagtatttttccag 31000141  T
Q  158 aaaatggatgaacgttcatcatattcata 186  Q
    ||||||| |||| ||||||||||||||||    
T  31000140 aaaatggttgaatgttcatcatattcata 31000112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 59 - 186
Target Start/End: Complemental strand, 20515886 - 20515759
Alignment:
Q  59 tgtttaccggtgttcttggtaaacaagaagactaattttaaaagttgcttgcatgatcaaactagaaatcctaggacatgttatgcaaattttttctaga 158  Q
    |||||||||||||| ||||||||||| ||||||| |||| |   || |  ||| |||||||| ||||||| ||||||||||| || ||  |||||| |||    
T  20515886 tgtttaccggtgtttttggtaaacaataagactagttttgattattacaagcaggatcaaaccagaaatcttaggacatgttgtgtaatctttttccaga 20515787  T
Q  159 aaatggatgaacgttcatcatattcata 186  Q
    || || ||||| ||||||||||||||||    
T  20515786 aagtgtatgaatgttcatcatattcata 20515759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 191
Target Start/End: Original strand, 19011828 - 19011957
Alignment:
Q  63 taccggtgttcttggtaaacaagaagactaattttaaaag-ttgcttgcatgatcaaactagaaatcctaggacatgttatgcaaattttttctagaaaa 161  Q
    |||| ||||| |||||||||||||   ||| || |||||| || |||||| ||||||| ||||||||||||||||| || |||||  |||||| |||||     
T  19011828 taccagtgtttttggtaaacaagattgctagttctaaaaggttacttgcaggatcaaattagaaatcctaggacatattgtgcaatatttttccagaaat 19011927  T
Q  162 tggatgaacgttcatcatattcataagttt 191  Q
    ||  |||| ||||||||||||  |||||||    
T  19011928 tgtttgaatgttcatcatattgttaagttt 19011957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 67 - 186
Target Start/End: Original strand, 21625152 - 21625272
Alignment:
Q  67 ggtgttcttggtaaacaagaagactaattttaaaa-gttgcttgcatgatcaaactagaaatcctaggacatgttatgcaaattttttctagaaaatgga 165  Q
    |||||| || |||||||| ||||||| |||||||| ||| |||| ||||||||||||||||| ||||| |||||   ||||  || |||  |||||||      
T  21625152 ggtgtttttagtaaacaataagactagttttaaaatgttacttgtatgatcaaactagaaattctagggcatgtcgcgcaatattgttcccgaaaatgtt 21625251  T
Q  166 tgaacgttcatcatattcata 186  Q
    |||| ||||||||||||||||    
T  21625252 tgaatgttcatcatattcata 21625272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 186
Target Start/End: Complemental strand, 17162286 - 17162213
Alignment:
Q  113 gatcaaactagaaatcctaggacatgttatgcaaattttttctagaaaatggatgaacgttcatcatattcata 186  Q
    |||||||| |||||||||| |||||||| |||||  |||||| | |||||  ||||| ||||||||||||||||    
T  17162286 gatcaaaccagaaatcctatgacatgttgtgcaatctttttccataaaatacatgaatgttcatcatattcata 17162213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 130
Target Start/End: Complemental strand, 20910562 - 20910493
Alignment:
Q  61 tttaccggtgttcttggtaaacaagaagactaattttaaaagttgcttgcatgatcaaactagaaatcct 130  Q
    |||| ||||||| ||||||||||| ||  |||||||||| |||||||| || ||||||||||| ||||||    
T  20910562 tttatcggtgtttttggtaaacaaaaaagctaattttaagagttgcttacaggatcaaactagtaatcct 20910493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 146
Target Start/End: Original strand, 23388945 - 23388982
Alignment:
Q  109 gcatgatcaaactagaaatcctaggacatgttatgcaa 146  Q
    |||||||||||| ||||||||||||||||||| |||||    
T  23388945 gcatgatcaaaccagaaatcctaggacatgttgtgcaa 23388982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 186
Target Start/End: Complemental strand, 29891594 - 29891521
Alignment:
Q  113 gatcaaactagaaatcctaggacatgttatgcaaattttttctagaaaatggatgaacgttcatcatattcata 186  Q
    |||||||| | ||||||||||||||||| || ||| ||| || |||||||   ||||||||||||| |||||||    
T  29891594 gatcaaaccataaatcctaggacatgttgtgaaaagtttctccagaaaattagtgaacgttcatcaaattcata 29891521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 58 - 194
Target Start/End: Complemental strand, 4521939 - 4521802
Alignment:
Q  58 ctgtttaccggtgttcttggtaaacaagaagactaattttaaaa-gttgcttgcatgatcaaactagaaatcctaggacatgttatgcaaattttttcta 156  Q
    ||||||| ||||| | ||||||||||| |||| || |||||||| ||| |||| |  ||||||||||||||| | ||||||||| ||||| |||||||||    
T  4521939 ctgtttatcggtgattttggtaaacaataagattagttttaaaatgttacttggaaaatcaaactagaaatcattggacatgttgtgcaatttttttcta 4521840  T
Q  157 gaaaatggatgaacgttcatcatattcataagtttgtt 194  Q
     |||||  ||||| ||||||||||||||| ||||||||    
T  4521839 taaaatatatgaaagttcatcatattcatgagtttgtt 4521802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 78 - 154
Target Start/End: Complemental strand, 14588814 - 14588738
Alignment:
Q  78 taaacaagaagactaattttaaaagttgcttgcatgatcaaactagaaatcctaggacatgttatgcaaattttttc 154  Q
    |||| ||||||||| ||||||||||||||||||| ||||||| ||||| || ||||| ||||| |||||| ||||||    
T  14588814 taaataagaagacttattttaaaagttgcttgcaggatcaaattagaagtcgtaggatatgttgtgcaaagtttttc 14588738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 191
Target Start/End: Complemental strand, 24634090 - 24633958
Alignment:
Q  59 tgtttaccggtgttcttggtaaacaagaagactaattttaaaagttgcttgcatgatcaaactagaaatcctaggacatgttatgcaaattttttctaga 158  Q
    ||||||||| |||| || |||||||| ||||||| |||| |   || |  ||| ||||| || | |||||||  |||||||||||||| |||||||||||    
T  24634090 tgtttaccgatgtttttcgtaaacaataagactagttttgattattacaagcaggatcacaccataaatcctttgacatgttatgcaatttttttctaga 24633991  T
Q  159 aaatggatgaacgttcatcatattcataagttt 191  Q
    || || ||||| |||||||||||||||| ||||    
T  24633990 aattgtatgaatgttcatcatattcataggttt 24633958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 162
Target Start/End: Original strand, 25018463 - 25018516
Alignment:
Q  109 gcatgatcaaactagaaatcctaggacatgttatgcaaattttttctagaaaat 162  Q
    |||||||||||| ||||||||||||||||||| |||||  ||||||||||||||    
T  25018463 gcatgatcaaaccagaaatcctaggacatgttgtgcaatctttttctagaaaat 25018516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 68 - 194
Target Start/End: Original strand, 44856001 - 44856126
Alignment:
Q  68 gtgttcttggtaaacaagaagactaattttaaaa-gttgcttgcatgatcaaactagaaatcctaggacatgttatgcaaattttttctagaaaatggat 166  Q
    ||||| |||||||||||||| |||| |||||||| ||| | || | ||||||| |||||||||||  | ||||| |||||   ||||| |||||||| ||    
T  44856001 gtgtttttggtaaacaagaatactagttttaaaatgttacctgtaggatcaaattagaaatccta--agatgttgtgcaaggattttcaagaaaatgcat 44856098  T
Q  167 gaacgttcatcatattcataagtttgtt 194  Q
    ||| |||||||| |||||||| ||||||    
T  44856099 gaatgttcatcacattcataaatttgtt 44856126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 186
Target Start/End: Original strand, 16083476 - 16083549
Alignment:
Q  113 gatcaaactagaaatcctaggacatgttatgcaaattttttctagaaaatggatgaacgttcatcatattcata 186  Q
    |||||||| ||||| |||||||||||||||||||  |||||| | ||||| ||| || |||||||| |||||||    
T  16083476 gatcaaaccagaaaccctaggacatgttatgcaatctttttccataaaatagattaatgttcatcaaattcata 16083549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 182
Target Start/End: Complemental strand, 24115553 - 24115428
Alignment:
Q  58 ctgtttaccggtgttcttggtaaacaagaagactaattttaaaa-gttgcttgcatgatcaaactagaaatcctaggacatgttatgcaaattttttcta 156  Q
    ||||||| ||||||| ||||||||||| || |||| |||||||| |||||||| | ||| | |||||||||  ||| ||||||| | |||   ||||||     
T  24115553 ctgtttatcggtgtttttggtaaacaataaaactagttttaaaatgttgcttgtaggataatactagaaattttagaacatgttgtacaataattttctg 24115454  T
Q  157 gaaaatggatgaacgttcatcatatt 182  Q
    |||||||  |||| ||||||||||||    
T  24115453 gaaaatgtttgaatgttcatcatatt 24115428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 146
Target Start/End: Original strand, 28623184 - 28623272
Alignment:
Q  59 tgtttaccggtgttcttggtaaacaagaagactaattttaa-aagttgcttgcatgatcaaactagaaatcctaggacatgttatgcaa 146  Q
    |||||||||||||| ||||||||||| ||  |||||||||| | ||| |||| | |||||||||| ||||||||  ||||||| |||||    
T  28623184 tgtttaccggtgtttttggtaaacaaaaatgctaattttaacatgttacttgaaagatcaaactaaaaatcctaaaacatgttgtgcaa 28623272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 66 - 190
Target Start/End: Complemental strand, 28619577 - 28619453
Alignment:
Q  66 cggtgttcttggtaaacaagaagactaattttaaaagttgcttgcatgatcaaactagaaatcctaggacatgttatgcaaattttttctagaaaatgga 165  Q
    ||||||| ||||| ||||||||||||| ||||||   || |  ||| |||||||| ||||||| ||||||||||| |||||   ||||| ||||||||      
T  28619577 cggtgtttttggtgaacaagaagactagttttaattattacaagcaggatcaaaccagaaatcataggacatgttgtgcaatccttttccagaaaatgtg 28619478  T
Q  166 tgaacgttcatcatattcataagtt 190  Q
    |||| ||||||||||||||||||||    
T  28619477 tgaatgttcatcatattcataagtt 28619453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 176
Target Start/End: Complemental strand, 39838850 - 39838751
Alignment:
Q  78 taaacaagaagactaattttaaaagttgcttgcatgatcaaactagaaatcctaggacatgttatgcaaa-ttttttctagaaaatggatgaacgttcat 176  Q
    |||||||||||| ||||||||||||||  ||| | ||||||| |||||||| | ||||||||| |||||| | ||||| |||||||| ||||| ||||||    
T  39838850 taaacaagaagattaattttaaaagttatttgtaggatcaaattagaaatctttggacatgttgtgcaaagtattttcaagaaaatgtatgaatgttcat 39838751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 113 - 183
Target Start/End: Complemental strand, 21166465 - 21166395
Alignment:
Q  113 gatcaaactagaaatcctaggacatgttatgcaaattttttctagaaaatggatgaacgttcatcatattc 183  Q
    ||||||||||||||| |||||||||||| |||||   ||||| |||||||| ||||| |||||||||||||    
T  21166465 gatcaaactagaaattctaggacatgttgtgcaatgattttccagaaaatgtatgaatgttcatcatattc 21166395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 154
Target Start/End: Original strand, 22847841 - 22847886
Alignment:
Q  109 gcatgatcaaactagaaatcctaggacatgttatgcaaattttttc 154  Q
    ||||||||||||||||||||||||||||| || |||||| ||||||    
T  22847841 gcatgatcaaactagaaatcctaggacattttgtgcaaagtttttc 22847886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 186
Target Start/End: Original strand, 22987549 - 22987622
Alignment:
Q  113 gatcaaactagaaatcctaggacatgttatgcaaattttttctagaaaatggatgaacgttcatcatattcata 186  Q
    |||||||||||||||| || |||||||| |||||  |||||| ||||| ||  |||| ||||||||||||||||    
T  22987549 gatcaaactagaaatcatatgacatgttgtgcaatctttttccagaaagtgtgtgaatgttcatcatattcata 22987622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 179
Target Start/End: Original strand, 10235814 - 10235934
Alignment:
Q  59 tgtttaccggtgttcttggtaaacaagaagactaattttaaaagttgcttgcatgatcaaactagaaatcctaggacatgttatgcaaattttttctaga 158  Q
    |||||||  ||||| ||||||||||| ||||||| |||| |   || |  |||||||||||| |||||| |||||||||||| |||||  |||||| | |    
T  10235814 tgtttactagtgtttttggtaaacaataagactagttttgattattacaagcatgatcaaaccagaaattctaggacatgttgtgcaatctttttccaaa 10235913  T
Q  159 aaatggatgaacgttcatcat 179  Q
    ||||  ||||| |||||||||    
T  10235914 aaatacatgaatgttcatcat 10235934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 183
Target Start/End: Complemental strand, 21171095 - 21171016
Alignment:
Q  101 agttgcttgcatgatcaaactagaaatcctaggacatgttatgcaaattttttctagaaaatggatgaacgttcatcatattc 183  Q
    |||| |||||| ||||||||||||||| |||||||||||   ||||   ||||| |||||||| ||||| |||||||||||||    
T  21171095 agttacttgcaggatcaaactagaaattctaggacatgt---gcaatgattttccagaaaatgtatgaatgttcatcatattc 21171016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 185
Target Start/End: Original strand, 16809342 - 16809469
Alignment:
Q  59 tgtttaccggtgttcttggtaaacaagaagactaattttaaaa-gttgcttgcatgatcaaactagaaatcctaggacatgttatgcaaattttttctag 157  Q
    |||||||| ||||  |||||||| |||||||||| |||||||| |||  ||||| |||||||||||||||  || ||||||||    ||   ||| | ||    
T  16809342 tgtttacccgtgtgtttggtaaataagaagactagttttaaaatgttatttgcaggatcaaactagaaattttaagacatgttgcataatgatttccaag 16809441  T
Q  158 aaaatggatgaacgttcatcatattcat 185  Q
    |||||| |||||| ||||||||||||||    
T  16809442 aaaatgtatgaacattcatcatattcat 16809469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 140
Target Start/End: Original strand, 23355477 - 23355506
Alignment:
Q  111 atgatcaaactagaaatcctaggacatgtt 140  Q
    ||||||||||||||||||||||||||||||    
T  23355477 atgatcaaactagaaatcctaggacatgtt 23355506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 176
Target Start/End: Complemental strand, 41635729 - 41635611
Alignment:
Q  59 tgtttaccggtgttcttggtaaacaagaagactaattttaaaa-gttgcttgcatgatcaaactagaaatcctaggacatgttatgcaaattttttctag 157  Q
    |||||||||||||| |||| |||| | ||||||| |||||||  ||| |||| | |||| |||||||||||||||| |||||| |||||   ||||||||    
T  41635729 tgtttaccggtgtttttggaaaaccataagactagttttaaattgttacttgaaagatcgaactagaaatcctagggcatgttgtgcaatgattttctag 41635630  T
Q  158 aaaatggatgaacgttcat 176  Q
    |||||| ||||| ||||||    
T  41635629 aaaatgtatgaatgttcat 41635611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 61 - 182
Target Start/End: Complemental strand, 6244264 - 6244143
Alignment:
Q  61 tttaccggtgttcttggtaaacaagaagactaattttaaaagttgcttgcatgatcaaactagaaatcctaggacatgttatgcaaattttttctagaaa 160  Q
    |||| ||||||| ||||||||||| || |||| |||||||  ||    ||||||||||||||||||||||| | |||||| |||||  |||||| |||||    
T  6244264 tttaacggtgtttttggtaaacaataaaactacttttaaattttaggcgcatgatcaaactagaaatcctatgccatgttgtgcaatctttttccagaaa 6244165  T
Q  161 atggatgaacgttcatcatatt 182  Q
    |||  |||| ||||||||||||    
T  6244164 atgtttgaatgttcatcatatt 6244143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 188
Target Start/End: Complemental strand, 5628156 - 5628027
Alignment:
Q  59 tgtttaccggtgttcttggtaaacaagaagactaattttaaaa-gttgcttgcatgatcaaactagaaatcctaggacatgttatgcaa-attttttcta 156  Q
    |||||||||||||| ||||||||||||| | ||||||||||||  || |||||| |||||||||| ||||  ||||| ||||| ||||| || |||||||    
T  5628156 tgtttaccggtgtttttggtaaacaagacg-ctaattttaaaatattacttgcaggatcaaactaaaaattttaggatatgtt-tgcaatatattttcta 5628059  T
Q  157 gaaaatggatgaacgttcatcatattcataag 188  Q
    |||||||  |||| ||||||||| ||| ||||    
T  5628058 gaaaatgtttgaatgttcatcatgttcttaag 5628027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 161
Target Start/End: Complemental strand, 24332847 - 24332752
Alignment:
Q  66 cggtgttcttggtaaacaagaagactaattttaaaagttgcttgcatgatcaaactagaaatcctaggacatgttatgcaaattttttctagaaaa 161  Q
    ||||||| ||||||||||||||   || ||||||||||| ||||||| ||||||||||||||  || |||||||| |||||  ||||| |||||||    
T  24332847 cggtgtttttggtaaacaagaatgttagttttaaaagttacttgcataatcaaactagaaattttatgacatgttgtgcaatgtttttttagaaaa 24332752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 175
Target Start/End: Complemental strand, 26654399 - 26654333
Alignment:
Q  109 gcatgatcaaactagaaatcctaggacatgttatgcaaattttttctagaaaatggatgaacgttca 175  Q
    ||||||||||||||||||||| | |||||||| |||||| |||||| |||||||| ||||| |||||    
T  26654399 gcatgatcaaactagaaatcccatgacatgttgtgcaaagtttttccagaaaatgtatgaatgttca 26654333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 146
Target Start/End: Original strand, 16711228 - 16711311
Alignment:
Q  63 taccggtgttcttggtaaacaagaagactaattttaaaagttgcttgcatgatcaaactagaaatcctaggacatgttatgcaa 146  Q
    |||||||||| ||||| ||||||||  ||| |||||| ||||||||| | ||||||||||| |||  ||||||||||| |||||    
T  16711228 taccggtgtttttggtgaacaagaatgctagttttaagagttgcttgtaggatcaaactagcaattataggacatgttgtgcaa 16711311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 186
Target Start/End: Complemental strand, 9354754 - 9354678
Alignment:
Q  110 catgatcaaactagaaatcctaggacatgttatgcaaattttttctagaaaatggatgaacgttcatcatattcata 186  Q
    ||||||||||| ||||||  ||||||||||| |||||  |||||| |||||| |  ||||||||||||| |||||||    
T  9354754 catgatcaaaccagaaattataggacatgttgtgcaatgtttttccagaaaaagagtgaacgttcatcaaattcata 9354678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 10398657 - 10398707
Alignment:
Q  103 ttgcttgcatgatcaaactagaaatcctaggacatgttatgcaaatttttt 153  Q
    ||||||||| |||||||||||||| |||||||||| || ||||||| ||||    
T  10398657 ttgcttgcaggatcaaactagaaaccctaggacatattgtgcaaatgtttt 10398707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 127
Target Start/End: Original strand, 42454556 - 42454625
Alignment:
Q  59 tgtttaccggtgttcttggtaaacaagaagactaattttaaa-agttgcttgcatgatcaaactagaaat 127  Q
    ||||||||||||||  |||||||||| |||| || |||||||  ||| |||||| |||||||||||||||    
T  42454556 tgtttaccggtgtttgtggtaaacaataagattagttttaaattgttacttgcaggatcaaactagaaat 42454625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 186
Target Start/End: Original strand, 14540324 - 14540452
Alignment:
Q  59 tgtttaccggtgttcttggtaaacaagaagactaattttaaaa-gttgcttgcatgatcaaactagaaatcctaggacatgttatgcaaattttttctag 157  Q
    |||||||  ||||| ||||||||||| ||| ||| |||||||| | | ||| ||  |||||||||||| ||||| | |||||| |||||  |||||| ||    
T  14540324 tgtttacttgtgtttttggtaaacaacaagtctagttttaaaatgatacttacaaaatcaaactagaattcctaaggcatgttgtgcaatctttttccag 14540423  T
Q  158 aaaatggatgaacgttcatcatattcata 186  Q
    || | |  |||| ||||||||||||||||    
T  14540424 aagaggtttgaatgttcatcatattcata 14540452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 16674917 - 16674965
Alignment:
Q  113 gatcaaactagaaatcctaggacatgttatgcaaattttttctagaaaa 161  Q
    |||||||| |||||| |||||||||||| |||||| |||||| ||||||    
T  16674917 gatcaaacaagaaattctaggacatgttgtgcaaagtttttccagaaaa 16674965  T

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Target: scaffold0014 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 192013 - 191961
Alignment:
Q  109 gcatgatcaaactagaaatcctaggacatgttatgcaaattttttctagaaaa 161  Q
    |||||||||||||||||||| || |||||||| || ||| |||||||||||||    
T  192013 gcatgatcaaactagaaatcttacgacatgttgtggaaagtttttctagaaaa 191961  T

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Target: scaffold0167 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 169
Target Start/End: Complemental strand, 789 - 735
Alignment:
Q  115 tcaaactagaaatcctaggacatgttatgcaaattttttctagaaaatggatgaa 169  Q
    |||||||||||||||||||||||||| |||||  |||||| | |||||| |||||    
T  789 tcaaactagaaatcctaggacatgttgtgcaatctttttccataaaatgtatgaa 735  T

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