View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5576_low_11 (Length: 327)
Name: NF5576_low_11
Description: NF5576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5576_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 124 - 323
Target Start/End: Original strand, 33223153 - 33223352
Alignment:
| Q |
124 |
gttattttatttgatgtcattttaaatactacaattgagaaaaatataattttagactttccctttgttaaaatccatcccctccttcctgtctccttaa |
223 |
Q |
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| T |
33223153 |
gttattttatttgatgtcattttaaatactacaattgagaaaaatataattttagactttccctttgttaaaatccatcccctccttcctgtctccttaa |
33223252 |
T |
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| Q |
224 |
cttcctttccatccattccattaaaaaacctcccctctccttcgttgagccaaaccgaaagatatttaaggacttggtaaacacattaccattattattg |
323 |
Q |
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| T |
33223253 |
cttcctttccatccattccattaaaaaacctcccctctccttcgttgagccaaaccgaaagatatttaaggacttggtaaacacattaccattattattg |
33223352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 129 - 319
Target Start/End: Original strand, 33226128 - 33226323
Alignment:
| Q |
129 |
tttatttgatgtcattttaaatactacaattgagaaaaatataattttagactttccctttgttaaaatccatcccctccttcctgtctccttaac-ttc |
227 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||| || |
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| T |
33226128 |
tttatttgatatcattttaaatactacaattgagaaaaatataattttagactttccctttgttaaaatcaatcccctccttcctgt-ttcttaactttt |
33226226 |
T |
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| Q |
228 |
ctttccatcc----attccattaaaaaacct-cccctctccttcgttgagccaaaccgaaagatatttaaggacttggtaaacacattaccattatt |
319 |
Q |
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| T |
33226227 |
ttttccatccattaattccattaaaatacctccccctctccttcgttgacccaaaccgaaagatatttaaatacttggcaaacacattgcaattatt |
33226323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 33223033 - 33223116
Alignment:
| Q |
4 |
cgattccacttcgatgctaattctgctgctatcttttcttttgcttaaggtatattagtccatatataaagaatgtaaacaaat |
87 |
Q |
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| T |
33223033 |
cgattccacttcgatgctaattctgctgctatcttttcttttgcttaaggtatattagtccatatataaagaatgtaaacaaat |
33223116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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