View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5576_low_13 (Length: 300)
Name: NF5576_low_13
Description: NF5576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5576_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 291
Target Start/End: Original strand, 28305475 - 28305748
Alignment:
| Q |
18 |
tatgtaaacttgcattccaaggtgttgatatcgacgatttgattgaattattgttgattccgacatgttgtgttgtctcatccaattcaccatttggata |
117 |
Q |
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| T |
28305475 |
tatgtaaacttgcattccaaggtgttgatattgatgatttgattgaattattgttgattcccacatgctctgttgtctcgctaaattcactatttgcgaa |
28305574 |
T |
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| Q |
118 |
cgaatcaaactccacatgaacaatatggttactagatgaaagcattgttgtggtgttaaatagtcccatcaagccaccagaggagtttggtgggatttca |
217 |
Q |
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| T |
28305575 |
agaatcaaactccacatgaacaatatggttactagatgaaagcattgttgtggtgttgaatagtcccatcaagccaccagaggagtttggtgggatttca |
28305674 |
T |
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| Q |
218 |
aatccataagcagctaagaaaaaggcaaggccatggccatataatgaaggtgatctacctcgagtgttgatgat |
291 |
Q |
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| T |
28305675 |
aatccataagcagctaagaaaaaggcaaggccatggccatagaatgaaggtgatctacctcgagtgttgatgat |
28305748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 119 - 290
Target Start/End: Original strand, 28295374 - 28295545
Alignment:
| Q |
119 |
gaatcaaactccacatgaacaatatggttactagatgaaagcattgttgtggtgttaaatagtcccatcaagccaccagaggagtttggtgggatttcaa |
218 |
Q |
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| T |
28295374 |
gaatcaaattctacatgaacaatttggttactagatgaaaccattgttgtggtgttaaatagacccataaagccaccatcagaattgagggggatttcaa |
28295473 |
T |
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| Q |
219 |
atccataagcagctaagaaaaaggcaaggccatggccatataatgaaggtgatctacctcgagtgttgatga |
290 |
Q |
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| T |
28295474 |
atccataaggaaccaagaaaaaggcaagaccatggccatataatgaaggtgatctaccttgagtgttgatga |
28295545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 28278421 - 28278218
Alignment:
| Q |
18 |
tatgtaaacttgcattccaaggtgttgatatcgacgatttgattgaattattgttgattccgacatgttgtgttgtctcatccaattcaccatttggata |
117 |
Q |
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||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||| | ||||||||| ||||||| ||||| | |
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| T |
28278421 |
tatgtaaacttgcattccaaggtgttgatattgatgatttgattgaattattgttgattcccacatgctctgttgtctcgctaaattcactatttgcgaa |
28278322 |
T |
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| Q |
118 |
cgaatcaaactccacatgaacaatatggttacta---gatgaaagcattgttgtggtgttaaatagtcccatcaagccaccagaggagtttggtgggatt |
214 |
Q |
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| T |
28278321 |
agaatcaaactcaacatgaacaattcggttactagatgatgaaaccattgttgtggtgttaaataggcccatcaagccaccagcagaattgggtggaatt |
28278222 |
T |
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| Q |
215 |
tcaa |
218 |
Q |
| |
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|||| |
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| T |
28278221 |
tcaa |
28278218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 57 - 257
Target Start/End: Original strand, 28265496 - 28265696
Alignment:
| Q |
57 |
tgattgaattattgttgattccgacatgttgtgttgtctcatccaattcaccatttggatacgaatcaaactccacatgaacaatatggttactagatga |
156 |
Q |
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||||||||||| ||||||||| ||||| | ||||||||| || |||||||||| ||| | ||||||||||||||| ||||||| |||||||||||||| |
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| T |
28265496 |
tgattgaattaacgttgattcccacatgctcggttgtctcaccccattcaccattgggaaaagaatcaaactccacaagaacaatttggttactagatga |
28265595 |
T |
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| Q |
157 |
aagcattgttgtggtgttaaatagtcccatcaagccaccagaggagtttggtgggatttcaaatccataagcagctaagaaaaaggcaaggccatggcca |
256 |
Q |
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|| ||| ||||| |||||||||| ||||| || || || || |||||||| || ||||||||| ||| ||| || ||||| ||||| ||||| ||| |
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| T |
28265596 |
aaccatggttgtcatgttaaataggcccataaaagcagtagctgaatttggtggaatatcaaatccaaaaggagccaaaaaaaatgcaagtccatgacca |
28265695 |
T |
|
| Q |
257 |
t |
257 |
Q |
| |
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| |
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| T |
28265696 |
t |
28265696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 28288275 - 28288037
Alignment:
| Q |
18 |
tatgtaaacttgcattccaaggtgttgatatcgacgatttgattgaattattgttgattccgacatgttgtgttgtctcatccaattcaccatttggata |
117 |
Q |
| |
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||||||||||||| |||||||||||||| | ||| || |||||||||| ||||||||||| ||||| | ||||||||| || | || ||||| || |
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| T |
28288275 |
tatgtaaacttgcgttccaaggtgttgacaccgatgaaatgattgaattgttgttgattcccacatgctccgttgtctcaccccagggacgatttgcgta |
28288176 |
T |
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| Q |
118 |
cgaatcaaactccacatgaacaatatggttactagatgaaagcattgttgtggtgttaaatagtcccatcaagccaccagaggagtttggtgggatttca |
217 |
Q |
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||||||||||||||||||| || ||||||| | |||| |||||| |||||||||||||| || | ||| |||||| || || |||||||||||| |
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| T |
28288175 |
agaatcaaactccacatgaagaa---ggttactggttgaattcattgtcgtggtgttaaatagaccaaaaaaggcaccagcagaattaggtgggatttca |
28288079 |
T |
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| Q |
218 |
aatccataagcagctaagaaaaaggcaaggccatggccatat |
259 |
Q |
| |
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|||||| ||| | | |||||||| |||| |||||||||||| |
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| T |
28288078 |
aatccaaaaggaaccaagaaaaatgcaattccatggccatat |
28288037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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