View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5576_low_17 (Length: 254)
Name: NF5576_low_17
Description: NF5576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5576_low_17 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 10 - 254
Target Start/End: Original strand, 29219096 - 29219340
Alignment:
| Q |
10 |
tagattattctcatagtgatatagttccaaattccttccagcatagtaatatgaactatgaacaaatttacttgctatatctcagtttcttcatgttaag |
109 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
29219096 |
tagatcatactcatagtgatatagttccaaattccttccagcatagtaatatgaactatgaacaaatttacttgctatatctcagtttcatcatgttaag |
29219195 |
T |
|
| Q |
110 |
aacattgtaatcatttcctaagtttccaacacttatcatatttgcaccgattctagtttctaaatgcctttttcctacccaaaccatacttaagcaccag |
209 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
29219196 |
aacattgtaatcatttgcttagtttccaacacttatcatatttgcaccgattctagtttctaaatgcctctttcctacccaaaccatacttaagcaccag |
29219295 |
T |
|
| Q |
210 |
attaataaaaataatatcaacctagtgcagaagaatctctggtcc |
254 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
29219296 |
attaataaaaataatatcaacctagtgcaaaagaatctctggtcc |
29219340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 27 - 193
Target Start/End: Original strand, 590494 - 590672
Alignment:
| Q |
27 |
gatatagttccaaattccttccagcatagtaatatgaactatgaa--------------caaatttacttgctatatctcagtttcttcatgttaagaac |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| ||| | |||||||||||||||||| |||||||||||||| |
|
|
| T |
590494 |
gatatagttccaaattccttccagcatagtaatatgaattatgaagtatgaaacatgaacaactacacttgctatatctcagttccttcatgttaagaat |
590593 |
T |
|
| Q |
113 |
attgtaatcatttcctaagtttccaacacttatcatatttgcaccgattctagtttctaaatgcctttttcctacccaaac |
193 |
Q |
| |
|
|| |||||||||||||||||||||||||||| |||||||||| |||| | |||||||||||||||||||||||||||| |
|
|
| T |
590594 |
ataataatcatttcctaagtttccaacactta--gtatttgcacccattcaaatttctaaatgcctttttcctacccaaac |
590672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 219
Target Start/End: Complemental strand, 183780 - 183683
Alignment:
| Q |
120 |
tcatttcctaagtttccaacacttatcatatttgcaccgattctagtttctaaatgcctttttcctacccaaaccatacttaagcaccagattaataaaa |
219 |
Q |
| |
|
|||| ||||| ||||||||||||||| ||||||| | ||| | ||||| || ||| |||||||||||||||||||||| || |||| || ||||||| |
|
|
| T |
183780 |
tcatgtcctatgtttccaacacttat--tatttgcgctcgttcaaatttcttaaagccattttcctacccaaaccatactttagtaccaaatcaataaaa |
183683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 141
Target Start/End: Complemental strand, 44628539 - 44628455
Alignment:
| Q |
57 |
aatatgaactatgaacaaatttacttgctatatctcagtttcttcatgttaagaacattgtaatcatttcctaagtttccaacac |
141 |
Q |
| |
|
||||||| |||||||||| | ||||||||||| ||| ||| |||||||||||||| | ||||||||||| ||| ||| ||||| |
|
|
| T |
44628539 |
aatatgagctatgaacaactatacttgctataactcggttccttcatgttaagaatctcataatcatttcccaagcttctaacac |
44628455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University