View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5576_low_19 (Length: 245)
Name: NF5576_low_19
Description: NF5576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5576_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 98 - 229
Target Start/End: Complemental strand, 37605659 - 37605528
Alignment:
| Q |
98 |
gttaaaattaatttgtactcgaagagttggaaatattgaatcgatactagcagaaaaataatgtttatgtttgcaaatatcagaggatggagtgcatgat |
197 |
Q |
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| T |
37605659 |
gttaaaattaatttgtactcgaagagttggaaatattgaatcgatactagcagaaaaataatgtttatgtttgcaaatatcagaggatggagtgcatgat |
37605560 |
T |
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| Q |
198 |
gaatttgtgtgtgtttgtgcagtgccattttg |
229 |
Q |
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| T |
37605559 |
gaatttgtgtgtgtttgtgcagtgccattttg |
37605528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 37605935 - 37605874
Alignment:
| Q |
27 |
tagatagatttgcgatgttggacctggatgggtgagaggatgaagtagcgccaatttataaa |
88 |
Q |
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| T |
37605935 |
tagatagatttgcgatgttggacctggatgggtgagatgatgaagtagcgccaatttataaa |
37605874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 37606213 - 37606283
Alignment:
| Q |
27 |
tagatagatttgcgatgttggacctggatgggtgagaggatgaagtagcgccaatttataaaatagtacta |
97 |
Q |
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| T |
37606213 |
tagatagatttgtgatgttggacctggatgggtgagaggatgaactagtgccaatttataaaatattacta |
37606283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 229
Target Start/End: Complemental strand, 37599965 - 37599900
Alignment:
| Q |
166 |
gtttgcaaatatcagaggatggagtgcatgatgaatttgtg--tgtgtttgtgcagtgccattttg |
229 |
Q |
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| T |
37599965 |
gtttgcaaatatcagaggatggagtacatgatgaatttgtgtttgtgtctatgcaatgccattttg |
37599900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 229
Target Start/End: Original strand, 34263793 - 34263858
Alignment:
| Q |
166 |
gtttgcaaatatcagaggatggagtgcatgatgaatttgtg--tgtgtttgtgcagtgccattttg |
229 |
Q |
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| T |
34263793 |
gtttgcaaatatcagaggacgaagtacatgatgaatttgtgtttgtgtttgtgcagtgccattttg |
34263858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 229
Target Start/End: Original strand, 35622711 - 35622776
Alignment:
| Q |
166 |
gtttgcaaatatcagaggatggagtgcatgatgaatttgtg--tgtgtttgtgcagtgccattttg |
229 |
Q |
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| T |
35622711 |
gtttgcaaatatcagaggatgaagaacatgatgaatttgtgtttgtgtttgtgcagtgccattttg |
35622776 |
T |
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