View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5576_low_25 (Length: 237)
Name: NF5576_low_25
Description: NF5576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5576_low_25 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 27 - 222
Target Start/End: Original strand, 29219377 - 29219572
Alignment:
| Q |
27 |
atatagcttcctatcaagaaacaaatttgatagtaaactaaattaatcaaaatgcagaagatataacagtaccttaacacgaagttccttcattggatga |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
29219377 |
atatagcttcctatcaagaaacaaatttgatagtaaactaaattaatcaaaatgcagaagatataacagtaccttaacacaaagttccttcattggatga |
29219476 |
T |
|
| Q |
127 |
ggtatcaataaagctcgaattgtcgtaacaattggaccctaaattataaactttattagtcagaggcggaaagtaagtattaatagatgtagttag |
222 |
Q |
| |
|
||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29219477 |
ggtgtcaataaagctcgaattgtggtaacaattggaccctaaattataaactttattagtcagaggcggaaagtaagtattaatagatgtagttag |
29219572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 34 - 222
Target Start/End: Original strand, 590802 - 590990
Alignment:
| Q |
34 |
ttcctatcaagaaacaaatttgatagtaaact-aaattaatcaaaatgcagaagatataacagtaccttaacacgaagttccttcattggatgaggtatc |
132 |
Q |
| |
|
||||||| ||| |||||||||||||||||| | |||||||||||| |||| |||||||||||||||||||| || |||||||| ||||||||||||| || |
|
|
| T |
590802 |
ttcctataaagcaacaaatttgatagtaaaattaaattaatcaaa-tgcaaaagatataacagtaccttaatacaaagttcctccattggatgaggtgtc |
590900 |
T |
|
| Q |
133 |
aataaagctcgaattgtcgtaacaattggaccctaaattataaactttattagtcagaggcggaaagtaagtattaatagatgtagttag |
222 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||| ||||| |||||| || |||||||||||| |
|
|
| T |
590901 |
aataaagctcgaattgtagtaacaattggaccctgtattataaacttcattagtcagaggtagaaagcaagtatgaacagatgtagttag |
590990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 34 - 222
Target Start/End: Complemental strand, 183575 - 183388
Alignment:
| Q |
34 |
ttcctatcaagaaacaaatttgatagtaaactaaattaatcaaaatgcagaagatataacagtaccttaacacgaagttccttcattggatgaggtatca |
133 |
Q |
| |
|
||||||||||| |||||||||||| ||||| ||||||||||| | |||| |||| ||| ||||||||||||| |||||||||||| |||||||||| | | |
|
|
| T |
183575 |
ttcctatcaagcaacaaatttgatggtaaaataaattaatcata-tgcaaaagaaatagcagtaccttaacaagaagttccttcactggatgaggtctta |
183477 |
T |
|
| Q |
134 |
ataaagctcgaattgtcgtaacaattggaccctaaattataaactttattagtcagaggcggaaagtaagtattaatagatgtagttag |
222 |
Q |
| |
|
|||||||| | ||||| |||||||||| |||||| ||||||||||||||||||||||||| ||||| |||||| || |||||||||||| |
|
|
| T |
183476 |
ataaagcttggattgtggtaacaattgaaccctatattataaactttattagtcagaggcagaaagcaagtatgaacagatgtagttag |
183388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 34 - 221
Target Start/End: Complemental strand, 44606936 - 44606750
Alignment:
| Q |
34 |
ttcctatcaagaaacaaatttgatagtaaactaaattaatcaaaatgcagaagatataacagtaccttaacacgaagttccttcattggatgaggtatca |
133 |
Q |
| |
|
||||||||||| ||||||| |||||||| | ||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
44606936 |
ttcctatcaagcaacaaatgtgatagtataataaatcaatcaaa-tgcaaaagatataacagtaccttaacacgaagttccttcattggatgaggtgtca |
44606838 |
T |
|
| Q |
134 |
ataaagctcgaattgtcgtaacaattggaccctaaattataaactttattagtcagaggcggaaagtaagtattaatagatgtagtta |
221 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| || ||||| ||||||||||||||||||||| |
|
|
| T |
44606837 |
ataaagctcgaattgtggtaacaattggaccctatattataaactttattagtcagaagcagaaagcaagtattaatagatgtagtta |
44606750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 76 - 221
Target Start/End: Complemental strand, 44628379 - 44628234
Alignment:
| Q |
76 |
aaatgcagaagatataacagtaccttaacacgaagttccttcattggatgaggtatcaataaagctcgaattgtcgtaacaattggaccctaaattataa |
175 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
44628379 |
aaatgcaaaagatataatggtaccttaacacgaagttccttcattggatgaggtgtcaataaagctcgaattgtggtaacaattggaccctatattataa |
44628280 |
T |
|
| Q |
176 |
actttattagtcagaggcggaaagtaagtattaatagatgtagtta |
221 |
Q |
| |
|
|||||||| |||||| || ||||| ||||||||||| |||| |||| |
|
|
| T |
44628279 |
actttattggtcagaagcagaaagcaagtattaatacatgtggtta |
44628234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University