View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5576_low_26 (Length: 236)

Name: NF5576_low_26
Description: NF5576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5576_low_26
NF5576_low_26
[»] chr5 (23 HSPs)
chr5 (1-220)||(32891166-32891385)
chr5 (8-211)||(4391842-4392045)
chr5 (13-207)||(37093912-37094106)
chr5 (12-211)||(8692511-8692710)
chr5 (9-209)||(228023-228223)
chr5 (9-209)||(34286594-34286793)
chr5 (30-211)||(3456773-3456951)
chr5 (10-149)||(11739278-11739417)
chr5 (9-209)||(5481358-5481552)
chr5 (13-173)||(35672345-35672504)
chr5 (8-149)||(38614239-38614384)
chr5 (9-170)||(41326486-41326647)
chr5 (9-156)||(29223465-29223610)
chr5 (86-189)||(40925912-40926015)
chr5 (18-182)||(28434210-28434374)
chr5 (88-165)||(6614289-6614366)
chr5 (29-193)||(31644658-31644812)
chr5 (136-209)||(42148957-42149030)
chr5 (46-149)||(16516975-16517078)
chr5 (9-46)||(42148869-42148906)
chr5 (50-107)||(42148899-42148956)
chr5 (13-53)||(43141523-43141563)
chr5 (165-211)||(43141517-43141563)
[»] chr2 (20 HSPs)
chr2 (8-211)||(13685992-13686195)
chr2 (18-205)||(41464902-41465089)
chr2 (30-211)||(25414934-25415115)
chr2 (9-211)||(28429281-28429480)
chr2 (12-208)||(42263834-42264030)
chr2 (9-210)||(45093147-45093344)
chr2 (27-210)||(14940985-14941169)
chr2 (24-192)||(3810285-3810453)
chr2 (33-208)||(19898943-19899118)
chr2 (9-209)||(35323474-35323674)
chr2 (15-211)||(35676268-35676470)
chr2 (8-210)||(36690817-36691020)
chr2 (9-209)||(28716316-28716538)
chr2 (9-151)||(2752690-2752832)
chr2 (17-149)||(29689279-29689408)
chr2 (9-189)||(16058394-16058572)
chr2 (13-118)||(23454350-23454456)
chr2 (50-188)||(40126520-40126658)
chr2 (12-55)||(41464901-41464944)
chr2 (168-209)||(24413862-24413903)
[»] chr4 (21 HSPs)
chr4 (8-209)||(41633216-41633416)
chr4 (9-211)||(18375388-18375589)
chr4 (9-208)||(24683076-24683275)
chr4 (23-208)||(37674000-37674185)
chr4 (9-177)||(26179241-26179409)
chr4 (9-211)||(17847539-17847736)
chr4 (67-209)||(54358170-54358312)
chr4 (9-209)||(23348112-23348316)
chr4 (9-149)||(47281591-47281735)
chr4 (85-208)||(41878592-41878715)
chr4 (68-211)||(4512159-4512303)
chr4 (48-209)||(47838942-47839102)
chr4 (13-209)||(54021241-54021432)
chr4 (9-94)||(41878321-41878406)
chr4 (9-57)||(4098532-4098580)
chr4 (124-209)||(41497890-41497977)
chr4 (8-144)||(30508941-30509076)
chr4 (167-210)||(52726030-52726073)
chr4 (13-55)||(18375394-18375436)
chr4 (13-55)||(54358266-54358308)
chr4 (9-37)||(54358102-54358130)
[»] chr3 (22 HSPs)
chr3 (7-216)||(23642971-23643180)
chr3 (9-209)||(521763-521963)
chr3 (8-207)||(45166225-45166424)
chr3 (8-207)||(38176390-38176589)
chr3 (9-211)||(36517514-36517716)
chr3 (8-177)||(1561286-1561455)
chr3 (10-211)||(50612871-50613072)
chr3 (9-211)||(31788305-31788507)
chr3 (12-212)||(39145254-39145454)
chr3 (13-209)||(52546746-52546942)
chr3 (9-209)||(34624486-34624674)
chr3 (19-192)||(20912177-20912350)
chr3 (13-211)||(51297020-51297219)
chr3 (46-148)||(9496567-9496669)
chr3 (9-79)||(43203248-43203318)
chr3 (9-149)||(22650454-22650594)
chr3 (9-62)||(544634-544687)
chr3 (47-130)||(38169329-38169410)
chr3 (9-66)||(11358880-11358938)
chr3 (46-148)||(15461578-15461680)
chr3 (13-55)||(45166380-45166422)
chr3 (68-104)||(29011343-29011379)
[»] chr1 (25 HSPs)
chr1 (10-210)||(31032695-31032895)
chr1 (13-211)||(1270175-1270373)
chr1 (9-210)||(34475899-34476100)
chr1 (8-200)||(29095530-29095722)
chr1 (9-211)||(16254855-16255056)
chr1 (8-211)||(20808946-20809149)
chr1 (8-206)||(9098571-9098766)
chr1 (9-208)||(47550791-47550990)
chr1 (13-211)||(45010204-45010401)
chr1 (9-149)||(24135755-24135893)
chr1 (9-211)||(42480121-42480325)
chr1 (9-207)||(34807936-34808134)
chr1 (65-194)||(2958710-2958834)
chr1 (22-209)||(44714807-44714985)
chr1 (10-134)||(4194767-4194891)
chr1 (9-94)||(41646576-41646660)
chr1 (102-211)||(4624438-4624540)
chr1 (138-206)||(41647356-41647424)
chr1 (9-117)||(50663730-50663839)
chr1 (9-77)||(7167455-7167523)
chr1 (20-163)||(27143603-27143746)
chr1 (15-144)||(48148796-48148920)
chr1 (9-45)||(2958833-2958869)
chr1 (13-56)||(47550944-47550987)
chr1 (13-55)||(42480277-42480319)
[»] chr7 (11 HSPs)
chr7 (9-210)||(23991948-23992149)
chr7 (12-188)||(27425773-27425949)
chr7 (9-172)||(17611842-17612005)
chr7 (9-217)||(8307525-8307731)
chr7 (9-149)||(22326858-22326998)
chr7 (69-211)||(42195437-42195579)
chr7 (50-209)||(25686406-25686563)
chr7 (9-76)||(19479441-19479508)
chr7 (18-125)||(41405797-41405904)
chr7 (13-47)||(42195539-42195573)
chr7 (11-43)||(42195390-42195422)
[»] chr8 (23 HSPs)
chr8 (19-209)||(39112658-39112848)
chr8 (8-209)||(41322528-41322729)
chr8 (18-212)||(29314008-29314202)
chr8 (31-209)||(36473048-36473226)
chr8 (8-209)||(15561913-15562114)
chr8 (28-207)||(11653712-11653894)
chr8 (9-161)||(4851733-4851885)
chr8 (8-211)||(34392107-34392301)
chr8 (9-145)||(8551489-8551625)
chr8 (40-211)||(2001679-2001849)
chr8 (16-211)||(1005596-1005794)
chr8 (107-210)||(33888946-33889049)
chr8 (50-177)||(11643324-11643452)
chr8 (47-164)||(4794159-4794275)
chr8 (38-144)||(37919603-37919709)
chr8 (129-209)||(37919508-37919588)
chr8 (163-211)||(4824296-4824344)
chr8 (46-163)||(5548972-5549089)
chr8 (8-55)||(1196506-1196553)
chr8 (172-210)||(13357628-13357666)
chr8 (10-86)||(33888865-33888942)
chr8 (9-60)||(3607036-3607087)
chr8 (13-55)||(36473052-36473094)
[»] chr6 (10 HSPs)
chr6 (18-209)||(7646773-7646964)
chr6 (13-194)||(25935512-25935693)
chr6 (29-145)||(12607123-12607239)
chr6 (18-182)||(29487541-29487705)
chr6 (9-88)||(17366850-17366929)
chr6 (117-209)||(17366930-17367016)
chr6 (48-135)||(29636994-29637081)
chr6 (113-164)||(28898426-28898477)
chr6 (133-190)||(12607050-12607107)
chr6 (18-65)||(28898505-28898552)
[»] scaffold0002 (1 HSPs)
scaffold0002 (12-208)||(492669-492865)
[»] scaffold0132 (2 HSPs)
scaffold0132 (18-116)||(545-642)
scaffold0132 (18-116)||(8505-8602)
[»] scaffold0071 (1 HSPs)
scaffold0071 (46-148)||(512-614)
[»] scaffold0339 (1 HSPs)
scaffold0339 (158-211)||(13392-13444)
[»] scaffold0188 (1 HSPs)
scaffold0188 (9-46)||(15977-16014)


Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 32891166 - 32891385
Alignment:
Q  1 ttcttgctgagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaagg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  32891166 ttcttgctgagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaaaagcagccaatcacaatgcactatttgccacaattcaagg 32891265  T
Q  101 aggtgtggctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaata 200  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  32891266 aggtgtggctaaaagataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattgttgatgctatttttctagataaata 32891365  T
Q  201 gcattttccttgctatatat 220  Q
    ||||||||||||||||||||    
T  32891366 gcattttccttgctatatat 32891385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 8 - 211
Target Start/End: Complemental strand, 4392045 - 4391842
Alignment:
Q  8 tgagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtg 107  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||| ||||    
T  4392045 tgagaaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcagccaattacaatgcactgtttgccacaattcaaggagctgtg 4391946  T
Q  108 gctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcatttt 207  Q
    ||| ||||||||||||||||||||||||| |||||||||||| ||| || |||||||||||||||||||| |||||||||||||||| |||| |||||||    
T  4391945 gctgaaaaataggaagtgaacaaataaattatgcaattaaaacttgccagctgtgtcttgaaaaattcttgatgctatttttctagagaaattgcatttt 4391846  T
Q  208 cctt 211  Q
    ||||    
T  4391845 cctt 4391842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 13 - 207
Target Start/End: Complemental strand, 37094106 - 37093912
Alignment:
Q  13 aatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggctaa 112  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||| || ||||||||| |||||||||||||||||| || |    
T  37094106 aatgttatatctctagaaaaataacatcaacaattcttcaagaataaagagcagtcaatcacattgtactatttgcaacaattcaaggaggtgtgactga 37094007  T
Q  113 aaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcatttt 207  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||    
T  37094006 aaaataggaagtgaacaaataaattatgcaattaaaacttgtcaactgtgtcttgaaaaattcttgatgctatttttctagaaaaataacatttt 37093912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 12 - 211
Target Start/End: Original strand, 8692511 - 8692710
Alignment:
Q  12 caatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggcta 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||| |||||||||||||||||||||| |||||||      
T  8692511 caatgttatatctctagaaaaataacatcaagaattcttcaagaataaatagcatccaatcataatgtactatttgccacaattcaaggaagtgtggcag 8692610  T
Q  112 aaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcattttcctt 211  Q
    |||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||| |||| ||||| ||||||||||    
T  8692611 aaaaatagaaagtgaataaataaatcatgcaattaaaatttgtcagctgtgtcttgaaagattcttgatgctatttttttagagaaataacattttcctt 8692710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 9 - 209
Target Start/End: Original strand, 228023 - 228223
Alignment:
Q  9 gagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtgg 108  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||     
T  228023 gagcaatgatatatctctagaaaaataacatcaagaatttttcaagaataaagaacaatcaatcacaatgcactatttaccacaattcaaggaggtgtga 228122  T
Q  109 ctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcattttc 208  Q
    || |||| ||| ||||||||||||| ||||||||||||||| |||| |  |||||||||||||| | |||||| |||||||||||| |||||||||||||    
T  228123 ctgaaaagtagaaagtgaacaaatatatcatgcaattaaaacttgtaagttgtgtcttgaaaaaattttaatgttatttttctagaaaaatagcattttc 228222  T
Q  209 c 209  Q
    |    
T  228223 c 228223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 9 - 209
Target Start/End: Original strand, 34286594 - 34286793
Alignment:
Q  9 gagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtgg 108  Q
    ||||||| ||||||||||| |||||||||||||| |||| |||||||||||| |||| |||||||| |||||||||||||||||||| | | ||||||||    
T  34286594 gagcaatattatatctctaaaaaaataacatcaataattattcaagaataaa-agcagccaatcacgatgcactatttgccacaattaatgaaggtgtgg 34286692  T
Q  109 ctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcattttc 208  Q
    || ||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||| | || |||||||||||||||| ||||| |||||||    
T  34286693 ctgaaaaataggaaatgaacaaataaatcatgcaattaaaatttgtcagttgtgtcttgaaaaaattttgatgctatttttctagagaaataacattttc 34286792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 30 - 211
Target Start/End: Original strand, 3456773 - 3456951
Alignment:
Q  30 aaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggctaaaaaataggaagtgaaca 129  Q
    |||||||||| | |||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  3456773 aaaataacattacgaattcttcaagaataaagagcagtcactcacaatgcactatttgccacaattcaaggaggtgtgactgaaaaataggaagtgaaca 3456872  T
Q  130 aataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcattttcctt 211  Q
    |||||||||||||||||||| |||||   ||||||   |||||||||| |||||||||||||||| ||||||||||||||||    
T  3456873 aataaatcatgcaattaaaacttgtcggttgtgtc---aaaaattcttgatgctatttttctagaaaaatagcattttcctt 3456951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 11739417 - 11739278
Alignment:
Q  10 agcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggc 109  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||   ||||| |||||||| ||||||||||||||||||||||||||    
T  11739417 agcaatgttatatctttagaaaaataacatcaagaattcttcaagaataaaaagcaggtaatcataatgcactgtttgccacaattcaaggaggtgtggc 11739318  T
Q  110 taaaaaataggaagtgaacaaataaatcatgcaattaaaa 149  Q
    | |||||||||| |||||||||||||| ||||||||||||    
T  11739317 tgaaaaataggaggtgaacaaataaattatgcaattaaaa 11739278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 9 - 209
Target Start/End: Original strand, 5481358 - 5481552
Alignment:
Q  9 gagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtgg 108  Q
    |||||||| |||||| |||||||||||| ||||| ||||||| |||||||||      ||| |||||||||| ||||||||||||||||  ||| |||||    
T  5481358 gagcaatgctatatcactagaaaaataatatcaaaaattctttaagaataaa------ccattcacaatgcattatttgccacaattcatagagatgtgg 5481451  T
Q  109 ctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcattttc 208  Q
    || |||||||  |||||||||||||||||||||| |||||||||  |||||||||||| |||||||||| |||||||||||||||| |||||  ||||||    
T  5481452 ctgaaaaataaaaagtgaacaaataaatcatgcagttaaaatttaccaactgtgtcttaaaaaattcttgatgctatttttctagagaaataatattttc 5481551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 13 - 173
Target Start/End: Complemental strand, 35672504 - 35672345
Alignment:
Q  13 aatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggctaa 112  Q
    |||||||||| |||||||||||||||| ||||||| |||||||||||||||||  |||||||||||||||||||  | ||||| |||||  ||| | |||    
T  35672504 aatgttatatttctagaaaaataacattaagaatttttcaagaataaagagcagtcaatcacaatgcactatttatcgcaatttaaggaaatgttg-taa 35672406  T
Q  113 aaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaat 173  Q
    | |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  35672405 acaataggaagtgaacaaataaatcatgcaattaaaatttatcaactgtgtcttcaaaaat 35672345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 8 - 149
Target Start/End: Complemental strand, 38614384 - 38614239
Alignment:
Q  8 tgagcaatgttatatctc-tagaaaaataacatcaagaattcttc---aagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggagg 103  Q
    |||||||||||||||||  ||||||||||||||||||||||||||   |||||||||||||  ||||||||||||||||| ||||||||||||||| ||     
T  38614384 tgagcaatgttatatctaatagaaaaataacatcaagaattcttcttcaagaataaagagcgcccaatcacaatgcactaattgccacaattcaagaaga 38614285  T
Q  104 tgtggctaaaaaataggaagtgaacaaataaatcatgcaattaaaa 149  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||    
T  38614284 tgtggctgaaaaataggaagtaaacaaataaatcatgcaattaaaa 38614239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 9 - 170
Target Start/End: Complemental strand, 41326647 - 41326486
Alignment:
Q  9 gagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtgg 108  Q
    |||||||| |||||||||||||||||||||||| ||  ||||||||||||||||||| ||||||||||||  ||||||| ||||||||||||||||||||    
T  41326647 gagcaatgctatatctctagaaaaataacatcacgatctcttcaagaataaagagcagccaatcacaatgtgctatttgacacaattcaaggaggtgtgg 41326548  T
Q  109 ctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaa 170  Q
    || ||||||||||||| |||||||| |  ||||||| || | ||| ||||||| ||| ||||    
T  41326547 ctgaaaaataggaagtaaacaaatacacgatgcaataaacacttgccaactgtatctagaaa 41326486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 9 - 156
Target Start/End: Original strand, 29223465 - 29223610
Alignment:
Q  9 gagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtgg 108  Q
    ||||| || ||||||| ||||||||||| |||||||||||||||| ||||| |||||  ||| ||||||||||||||||||||||||||||||||||||     
T  29223465 gagcagtgctatatctttagaaaaataatatcaagaattcttcaa-aataa-gagcagtcaaccacaatgcactatttgccacaattcaaggaggtgtga 29223562  T
Q  109 ctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtca 156  Q
    || ||||||| |||||| ||||||||||||||||||||||| ||||||    
T  29223563 ctgaaaaataagaagtgtacaaataaatcatgcaattaaaacttgtca 29223610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 86 - 189
Target Start/End: Original strand, 40925912 - 40926015
Alignment:
Q  86 tgccacaattcaaggaggtgtggctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctat 185  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||  ||||||||||||||||||| ||||||     
T  40925912 tgccacaattcaaagaggtgtggctgaaaaataggaagtgaacaaataaatcatacaattaaaacttgtcagatgtgtcttgaaaaattcttgatgctac 40926011  T
Q  186 tttt 189  Q
    ||||    
T  40926012 tttt 40926015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 28434210 - 28434374
Alignment:
Q  18 tatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggctaaaaaat 117  Q
    ||||||||||||||||||||||  ||||||||| || ||||||||||| ||||| |||||||||||||| |||||||| ||| || |||| ||  |||||    
T  28434210 tatatctctagaaaaataacattgagaattctttaaaaataaagagcagccaattacaatgcactatttaccacaatttaagaagatgtgactgtaaaat 28434309  T
Q  118 aggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgc 182  Q
    || || |||| ||||||||||||||||||||| | |  |||||| |||  |||||||||| ||||    
T  28434310 agaaaatgaataaataaatcatgcaattaaaactcgctaactgtatctaaaaaaattcttgatgc 28434374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 88 - 165
Target Start/End: Complemental strand, 6614366 - 6614289
Alignment:
Q  88 ccacaattcaaggaggtgtggctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtct 165  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  6614366 ccacaattcaaggaggtgtgcctgaaaaataggaagtgaacaaataaatcatgcaattaaaacttgtcgactgtgtct 6614289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 29 - 193
Target Start/End: Original strand, 31644658 - 31644812
Alignment:
Q  29 aaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggctaaaaaataggaagtgaac 128  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||            | ||||| | |||||||||||||||||    
T  31644658 aaaaataacatcaataattcttcaagaataaagagcagccaatcacaatgcactatttacc------------gatgtggttgaaaaataggaagtgaac 31644745  T
Q  129 aaataaatcatgcaattaaaatttgtcaa--ctgtgtcttgaaaaattcttaatgctatttttctag 193  Q
    ||||||| ||||||||||||| ||  |||   ||||||||| ||||||||| || ||||||||||||    
T  31644746 aaataaaccatgcaattaaaacttaccaattgtgtgtcttgcaaaattcttgatactatttttctag 31644812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 136 - 209
Target Start/End: Original strand, 42148957 - 42149030
Alignment:
Q  136 tcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcattttcc 209  Q
    ||||||||||||||||| |||  ||||||||||||||||||| || ||||||||||||| ||||||| ||||||    
T  42148957 tcatgcaattaaaatttatcagttgtgtcttgaaaaattcttgatactatttttctagagaaatagcgttttcc 42149030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 149
Target Start/End: Complemental strand, 16517078 - 16516975
Alignment:
Q  46 ttcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggctaaaaaataggaagtgaacaaataaatcatgcaatt 145  Q
    ||||| ||||||||||||||  |||||| ||| ||||  |||| ||||| || |||| ||| ||| || |||||  ||||||||||||||||||| ||||    
T  16517078 ttctttaagaataaagagcagtcaatcataattcactgcttgcaacaatacacggagatgttgctgaataatagagagtgaacaaataaatcatgaaatt 16516979  T
Q  146 aaaa 149  Q
    ||||    
T  16516978 aaaa 16516975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 42148869 - 42148906
Alignment:
Q  9 gagcaatgttatatctctagaaaaataacatcaagaat 46  Q
    |||||||||||||||||||||||||||| |||||||||    
T  42148869 gagcaatgttatatctctagaaaaataatatcaagaat 42148906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 42148899 - 42148956
Alignment:
Q  50 tcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtg 107  Q
    ||||||||||| ||||  ||||||||||| |||||||| || ||||||||||||||||    
T  42148899 tcaagaataaatagcactcaatcacaatgtactatttgacataattcaaggaggtgtg 42148956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 43141523 - 43141563
Alignment:
Q  13 aatgttatatctctagaaaaataacatcaagaattcttcaa 53  Q
    |||||||| |||||||||||||| |||||||||||||||||    
T  43141523 aatgttatttctctagaaaaatagcatcaagaattcttcaa 43141563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 211
Target Start/End: Complemental strand, 43141563 - 43141517
Alignment:
Q  165 ttgaaaaattcttaatgctatttttctagataaatagcattttcctt 211  Q
    ||||| ||||||| |||||||||||||||| ||||| ||||||||||    
T  43141563 ttgaagaattcttgatgctatttttctagagaaataacattttcctt 43141517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 8 - 211
Target Start/End: Original strand, 13685992 - 13686195
Alignment:
Q  8 tgagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtg 107  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  13685992 tgagcaatgctatatctctagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgcactacttgccacaattcaaggaggtgtg 13686091  T
Q  108 gctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcatttt 207  Q
    ||| |||||||||||||||||||||||||||||||||||||| ||| ||| |||||||| |||||||||| |||||||||||||||| ||||||||||||    
T  13686092 gctgaaaaataggaagtgaacaaataaatcatgcaattaaaacttgccaattgtgtcttaaaaaattcttgatgctatttttctagagaaatagcatttt 13686191  T
Q  208 cctt 211  Q
    ||||    
T  13686192 cctt 13686195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 41465089 - 41464902
Alignment:
Q  18 tatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggctaaaaaat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| |  |||||||||||||||||||| |||||||||||||||||| | ||||||    
T  41465089 tatatctctagaaaaataacatcaagaattcttcaagaataaagtgcagcggatcacaatgcactatttgccgcaattcaaggaggtgtggttgaaaaat 41464990  T
Q  118 aggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcatt 205  Q
    || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||| ||||| ||||    
T  41464989 agaaagtgaacaaataaatcatgcaattaaaacttgtcaactgtgtcttgaaaaattcttgatgttatttttctagagaaataacatt 41464902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 30 - 211
Target Start/End: Original strand, 25414934 - 25415115
Alignment:
Q  30 aaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggctaaaaaataggaagtgaaca 129  Q
    ||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||| ||||| ||||| || |||||||||    
T  25414934 aaaataacatcaagaattcttcaagaataaagaacagtcaatcacaatgcactatttgccacaattcaaggaggtatggctgaaaaaaagaaagtgaaca 25415033  T
Q  130 aataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcattttcctt 211  Q
    |||||||||||||||||||| || ||| |||||||||||||||||||| || ||||||||||||| | ||||||||||||||    
T  25415034 aataaatcatgcaattaaaacttatcagctgtgtcttgaaaaattctttatactatttttctagagatatagcattttcctt 25415115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 9 - 211
Target Start/End: Original strand, 28429281 - 28429480
Alignment:
Q  9 gagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtgg 108  Q
    |||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||| |||| ||||||||| ||||||||| |||| |||||||||||     
T  28429281 gagcaatgctatatctttagaaaaataatatcaagaattcttcaagaataaagagcagccaaacacaatgcattatttgccataatttaaggaggtgtga 28429380  T
Q  109 ctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcattttc 208  Q
    || ||||||| |||||||||||||||||||||||||||||| ||||||   ||||| |||||||||||| |||||||||||||| | |||||||||||||    
T  28429381 ctgaaaaataagaagtgaacaaataaatcatgcaattaaaacttgtca---gtgtcatgaaaaattcttgatgctatttttctaaagaaatagcattttc 28429477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 12 - 208
Target Start/End: Original strand, 42263834 - 42264030
Alignment:
Q  12 caatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggcta 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||     
T  42263834 caatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcagccaatcacaatgcacaatttgtcacaattcaaggaggtgtggctg 42263933  T
Q  112 aaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcattttc 208  Q
    ||||||||||| ||||||||||||| |||||||||||| ||| |    ||||||||||||| | || ||||||||||| |||| ||||| |||||||    
T  42263934 aaaaataggaaatgaacaaataaattatgcaattaaaacttgactgtcgtgtcttgaaaaaattttgatgctatttttttagagaaataacattttc 42264030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 9 - 210
Target Start/End: Complemental strand, 45093344 - 45093147
Alignment:
Q  9 gagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtgg 108  Q
    ||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||    |||||||||||||||||||||||||||||||||| ||     
T  45093344 gagcagtgctatatctctagaaaaataacatcaataattcttcaagaataaagagcaa----tcacaatgcactatttgccacaattcaaggaggtatga 45093249  T
Q  109 ctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcattttc 208  Q
    || ||||||||||||| ||||| |||||||||||||||||||||  ||||||| |||| |||||||||| |||||||||||||||| ||||| |||||||    
T  45093248 ctgaaaaataggaagtaaacaattaaatcatgcaattaaaatttcccaactgtatcttaaaaaattcttgatgctatttttctagagaaataacattttc 45093149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 27 - 210
Target Start/End: Complemental strand, 14941169 - 14940985
Alignment:
Q  27 agaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggcta-aaaaataggaagtg 125  Q
    |||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||| ||  ||||||| ||||||    
T  14941169 agaaaaataacatcaataattcttcaagaataaagagcagtcaatcacaatgcactatttgccacaattcaaagaggtgtgactcgaaaaataagaagtg 14941070  T
Q  126 aacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcattttcct 210  Q
    ||||||||||||||| |||||||| ||| ||  ||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  14941069 aacaaataaatcatgaaattaaaacttgccagttgtgtcttgaaaaattcttgatgctatttttctagagaaatagcattttcct 14940985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 24 - 192
Target Start/End: Complemental strand, 3810453 - 3810285
Alignment:
Q  24 tctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggctaaaaaataggaag 123  Q
    |||||||||||||||| || |||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||| || ||||||| ||||    
T  3810453 tctagaaaaataacattaataattcttcaagaataaagagtagccaattacaatgcactatttgccacaattcaaggaggtgtgactgaaaaataagaag 3810354  T
Q  124 tgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttcta 192  Q
    |||||||||||||||||||||||||| ||| || |||||||||||||| ||||| ||||||||||||||    
T  3810353 tgaacaaataaatcatgcaattaaaacttgccagctgtgtcttgaaaatttcttgatgctatttttcta 3810285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 33 - 208
Target Start/End: Original strand, 19898943 - 19899118
Alignment:
Q  33 ataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggctaaaaaataggaagtgaacaaat 132  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||| | ||| |||| ||||||||||||||||    
T  19898943 ataacattaagaattcttcaagaataaagagcagccaatcacaatgcattatttgtcacaattcaaggaggtattgctgaaaattaggaagtgaacaaat 19899042  T
Q  133 aaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcattttc 208  Q
    ||||||||||||||||| ||| ||  ||||||||||||||||| | |||||||||||||||| |||||||||||||    
T  19899043 aaatcatgcaattaaaacttgccagttgtgtcttgaaaaattcgtgatgctatttttctagagaaatagcattttc 19899118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 9 - 209
Target Start/End: Complemental strand, 35323674 - 35323474
Alignment:
Q  9 gagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtgg 108  Q
    ||||| || ||||| | ||||||||||||||||| ||||||||||||||||||| ||  |||||||||| |||||||||||||||||||| |||||||||    
T  35323674 gagcagtgctatatttatagaaaaataacatcaaaaattcttcaagaataaagaacagtcaatcacaatacactatttgccacaattcaatgaggtgtgg 35323575  T
Q  109 ctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcattttc 208  Q
    || |||||||  || |||||| |||||||||| |||||||| |||||||||||||||  ||||||||||||| ||||||||||||| ||||| |||||||    
T  35323574 ctgaaaaataaaaactgaacatataaatcatgtaattaaaacttgtcaactgtgtctgaaaaaattcttaatactatttttctagagaaataacattttc 35323475  T
Q  209 c 209  Q
    |    
T  35323474 c 35323474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 15 - 211
Target Start/End: Complemental strand, 35676470 - 35676268
Alignment:
Q  15 tgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggctaaaa 114  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||||  ||| |||||||||||||||||||||||||||||||||||| || |||    
T  35676470 tgttatatctctaaaaaaataacatcaagaattctttaagaataaagagcagtcaaccacaatgcactatttgccacaattcaaggaggtgtgactgaaa 35676371  T
Q  115 aataggaagtgaacaaataaatcatg-------caattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcatttt 207  Q
    |||| ||||||||||||||||| |||       ||||||||| ||| ||  |||||||  ||||| |||| |||||||||||||||| ||||||||||||    
T  35676370 aatatgaagtgaacaaataaat-atgaagtgaacaattaaaacttgccagttgtgtctaaaaaaaatcttgatgctatttttctagagaaatagcatttt 35676272  T
Q  208 cctt 211  Q
    ||||    
T  35676271 cctt 35676268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 8 - 210
Target Start/End: Complemental strand, 36691020 - 36690817
Alignment:
Q  8 tgagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtg 107  Q
    |||||||||||||||||||| ||| |||||||||| |||||||||| |||||| | || ||||| | ||| || |||||||||||||||||||| | |||    
T  36691020 tgagcaatgttatatctctaaaaatataacatcaaaaattcttcaaaaataaaaaacatccaattataatacagtatttgccacaattcaaggaagcgtg 36690921  T
Q  108 gctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaa--attcttaatgctatttttctagataaatagcatt 205  Q
    |||  ||| |||||||||||||||||||||| | ||||||||||||||| ||||||||||||||  |||||||||| |||||||||| | ||||||||||    
T  36690920 gct-gaaagtaggaagtgaacaaataaatcaagtaattaaaatttgtcagctgtgtcttgaaaaatattcttaatgttatttttctaaagaaatagcatt 36690822  T
Q  206 ttcct 210  Q
    |||||    
T  36690821 ttcct 36690817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 9 - 209
Target Start/End: Complemental strand, 28716538 - 28716316
Alignment:
Q  9 gagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattc------------ 96  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| || | || |||||||||||||||||||||||||||                
T  28716538 gagcaatgttatatctctagaaaaatgacatcaagaattcttcaagaataaatagtagccgatcacaatgcactatttgccacaattcaaagaggtgtgg 28716439  T
Q  97 ----------aaggaggtgtggctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatt 186  Q
              || ||||||||||| ||||||||||||||||||||||||| |||||||||||| ||| ||  ||||||||||||||||||| ||||||||    
T  28716438 ctgacaattcaaagaggtgtggctgaaaaataggaagtgaacaaataaataatgcaattaaaacttgccagttgtgtcttgaaaaattcttgatgctatt 28716339  T
Q  187 tttctagataaatagcattttcc 209  Q
    |||||||| ||||| ||||||||    
T  28716338 tttctagaaaaataacattttcc 28716316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 9 - 151
Target Start/End: Complemental strand, 2752832 - 2752690
Alignment:
Q  9 gagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtgg 108  Q
    |||||||| ||||| |||||||||||||||| |||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||| | ||     
T  2752832 gagcaatgatatatttctagaaaaataacattaagaattcttcaagaaaaaatagcagccaatcacaatgcactatttgccacaattcaaggagatctga 2752733  T
Q  109 ctaaaaaataggaagtgaacaaataaatcatgcaattaaaatt 151  Q
    || ||||||| |||||||| ||||||||||| |||||||||||    
T  2752732 ctgaaaaataagaagtgaataaataaatcatacaattaaaatt 2752690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 17 - 149
Target Start/End: Complemental strand, 29689408 - 29689279
Alignment:
Q  17 ttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggctaaaaaa 116  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||   ||||||||||||||||||| | ||||||||||||| || || |||||    
T  29689408 ttatatctctagaaaaataacatcaagaattttttaagaataaagagcaa---atcacaatgcactatttgctataattcaaggaggtttgactgaaaaa 29689312  T
Q  117 taggaagtgaacaaataaatcatgcaattaaaa 149  Q
    |||||||||||| ||||||||||||||||||||    
T  29689311 taggaagtgaactaataaatcatgcaattaaaa 29689279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 9 - 189
Target Start/End: Complemental strand, 16058572 - 16058394
Alignment:
Q  9 gagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggag--gtgt 106  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |  | || | |||| || ||||| ||||||||||||||  ||||    
T  16058572 gagcaatgctatatctctagaaaaataacattaagaattcttcaagaataaagagtagtctataataatgaac-atttgtcacaattcaaggagttgtgt 16058474  T
Q  107 ggctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtctt-gaaaaattcttaatgctattttt 189  Q
    |||| ||||||| |||||||| ||||||||||||||| ||||| ||||    ||||||||  |||||||||| |||||||||||    
T  16058473 ggctgaaaaatatgaagtgaataaataaatcatgcaaataaaacttgt----tgtgtcttaaaaaaattcttgatgctattttt 16058394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 118
Target Start/End: Complemental strand, 23454456 - 23454350
Alignment:
Q  13 aatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcact-atttgccacaattcaaggaggtgtggcta 111  Q
    |||| |||||||||||||||||||||| || ||||||||||||||||||||||  ||||||||||||||| ||||| ||||||||||||||||| | ||     
T  23454456 aatgctatatctctagaaaaataacataaaaaattcttcaagaataaagagcagtcaatcacaatgcactaatttgacacaattcaaggaggtgcgactg 23454357  T
Q  112 aaaaata 118  Q
    |||||||    
T  23454356 aaaaata 23454350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 50 - 188
Target Start/End: Complemental strand, 40126658 - 40126520
Alignment:
Q  50 tcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggctaaaaaataggaagtgaacaaataaatcatgcaattaaaa 149  Q
    ||||||||||||||||  || ||| ||||||||||||  ||||||| ||| || | | | | |||||||||||||||||||||||||||| |||||||||    
T  40126658 tcaagaataaagagcagtcattcataatgcactatttatcacaatttaagaagatatagttgaaaaataggaagtgaacaaataaatcatacaattaaaa 40126559  T
Q  150 tttgtcaactgtgtcttgaaaaattcttaatgctatttt 188  Q
    ||||| | |||| |||| |||||||||  ||||||||||    
T  40126558 tttgtgagctgtatcttaaaaaattctcgatgctatttt 40126520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 41464901 - 41464944
Alignment:
Q  12 caatgttatatctctagaaaaataacatcaagaattcttcaaga 55  Q
    ||||||||| |||||||||||||||||||||||||| |||||||    
T  41464901 caatgttatttctctagaaaaataacatcaagaatttttcaaga 41464944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 209
Target Start/End: Original strand, 24413862 - 24413903
Alignment:
Q  168 aaaaattcttaatgctatttttctagataaatagcattttcc 209  Q
    ||||||| || |||||||||||||||| ||||||||||||||    
T  24413862 aaaaattattgatgctatttttctagagaaatagcattttcc 24413903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 8 - 209
Target Start/End: Original strand, 41633216 - 41633416
Alignment:
Q  8 tgagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtg 107  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  41633216 tgagcaatgttatatctctagaaaaataacattaagaattcttcaagaataaagagcagccaatcacaatgcactacttgccacaattcaaggaggtgtg 41633315  T
Q  108 gctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcatttt 207  Q
    ||| ||||||||||||||||||||||||| ||| ||||||||||||||| || ||||||||||||||||| |||||||||||||||| ||||||||||||    
T  41633316 gctgaaaaataggaagtgaacaaataaat-atgtaattaaaatttgtcagctttgtcttgaaaaattcttgatgctatttttctagagaaatagcatttt 41633414  T
Q  208 cc 209  Q
    ||    
T  41633415 cc 41633416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 9 - 211
Target Start/End: Complemental strand, 18375589 - 18375388
Alignment:
Q  9 gagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtgg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||   |||||||||||||||||||||||||||||||||||||||||    
T  18375589 gagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagtgcggtcaatcacaatgcactatttgccacaattcaaggaggtgtgg 18375490  T
Q  109 ctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcattttc 208  Q
    ||  ||||||||||||||||||||||||||||||||||||| ||| ||  ||||||||||||||||||| |||||||||||||||| ||||| |||||||    
T  18375489 ct-gaaaataggaagtgaacaaataaatcatgcaattaaaacttgccagttgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttc 18375391  T
Q  209 ctt 211  Q
    |||    
T  18375390 ctt 18375388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 9 - 208
Target Start/End: Original strand, 24683076 - 24683275
Alignment:
Q  9 gagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtgg 108  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||     
T  24683076 gagcaatgctatatctctagaaaaataacatcaagaattcttcaagaataaagagcagccaatcacaatgcactatttgccacaattcaggaaggtgtga 24683175  T
Q  109 ctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcattttc 208  Q
    || |||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||| || ||||||||||| | ||||| |||||||    
T  24683176 ctgaaaaataggaagtgaacaaataaatcatgcaattaaaacttatcaagtgtgtcttgaaaaattcttgatactatttttctaaagaaataacattttc 24683275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 23 - 208
Target Start/End: Complemental strand, 37674185 - 37674000
Alignment:
Q  23 ctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggctaaaaaataggaa 122  Q
    ||||||||||||||||||||||||||||||||| |||||||||  ||||||||||| ||||||| | ||||||||| ||||||||||| |||||||  ||    
T  37674185 ctctagaaaaataacatcaagaattcttcaagactaaagagcagtcaatcacaatgtactatttactacaattcaaagaggtgtggctgaaaaataaaaa 37674086  T
Q  123 gtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcattttc 208  Q
    || |||||||||||||||||||||||| ||||||   |||||||||||||||||| |||||||||||||||| ||||| |||||||    
T  37674085 gttaacaaataaatcatgcaattaaaacttgtcacacgtgtcttgaaaaattcttgatgctatttttctagagaaatatcattttc 37674000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 9 - 177
Target Start/End: Complemental strand, 26179409 - 26179241
Alignment:
Q  9 gagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtgg 108  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||  ||||||||||||||||||||    
T  26179409 gagcaatgttatatctctagaaaaataacattaagaattcttcaagaataaagagcagccaatcacagtgcactatttaacacaattcaaggaggtgtgg 26179310  T
Q  109 ctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattctt 177  Q
    || ||||||||||||||||||||||||||||  |||| ||| ||| || |||||| || ||||||||||    
T  26179309 ctgaaaaataggaagtgaacaaataaatcatcaaattgaaacttgacagctgtgttttaaaaaattctt 26179241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 9 - 211
Target Start/End: Complemental strand, 17847736 - 17847539
Alignment:
Q  9 gagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtgg 108  Q
    |||||||| |||||||||||||||||||||| || |||||||||||| |||| ||||  |||||| |||||||     |||||||||||||||||||||     
T  17847736 gagcaatgctatatctctagaaaaataacataaaaaattcttcaagattaaaaagcagtcaatcataatgcac-----gccacaattcaaggaggtgtga 17847642  T
Q  109 ctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcattttc 208  Q
    |  |||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||| ||| ||||| |||||||    
T  17847641 cagaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttcgagagaaataacattttc 17847542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 67 - 209
Target Start/End: Original strand, 54358170 - 54358312
Alignment:
Q  67 ccaatcacaatgcactatttgccacaattcaaggaggtgtggctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtctt 166  Q
    ||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||    
T  54358170 ccaatcacaatgcactatttgccacaatttaagggggtgtggctgaaaaataggaagtgaacaaataaatcatgcaattaaaacttgccaactatgtctt 54358269  T
Q  167 gaaaaattcttaatgctatttttctagataaatagcattttcc 209  Q
    ||||||||||| |||||||||||||||| ||||| ||||||||    
T  54358270 gaaaaattcttgatgctatttttctagagaaataacattttcc 54358312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 9 - 209
Target Start/End: Complemental strand, 23348316 - 23348112
Alignment:
Q  9 gagcaatgttatatctctagaaaaa-taacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtg 107  Q
    |||||||| ||||||| || ||||| ||||||||| ||||||| ||||||||||| ||  |||||||||| |||||||| ||| ||||||||||||||||    
T  23348316 gagcaatgctatatctttaaaaaaaataacatcaataattctttaagaataaagaacactcaatcacaatacactatttaccataattcaaggaggtgtg 23348217  T
Q  108 gctaaaaaatagga---agtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcat 204  Q
    ||| ||||||||||   |||||||||||||||||||||||||||| |||||   ||| |||||||||||| || |||||||||||||||| |||||||||    
T  23348216 gctgaaaaataggaggaagtgaacaaataaatcatgcaattaaaacttgtcggttgtttcttgaaaaattattgatgctatttttctagagaaatagcat 23348117  T
Q  205 tttcc 209  Q
    |||||    
T  23348116 tttcc 23348112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 9 - 149
Target Start/End: Complemental strand, 47281735 - 47281591
Alignment:
Q  9 gagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccac----aattcaaggaggt 104  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||    | |||||||||||    
T  47281735 gagcaatgttatatgtctagaaaaataacatcaagaattcttcaagaataaagaacgacaaatcacaatgcactatttgccacattaatttcaaggaggt 47281636  T
Q  105 gtggctaaaaaataggaagtgaacaaataaatcatgcaattaaaa 149  Q
    |||| | ||||||||||||||||||||||||||||||||||||||    
T  47281635 gtggttgaaaaataggaagtgaacaaataaatcatgcaattaaaa 47281591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 85 - 208
Target Start/End: Original strand, 41878592 - 41878715
Alignment:
Q  85 ttgccacaattcaaggaggtgtggctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgcta 184  Q
    ||||||||||||||  |||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||  | ||||||||||||||||| ||||||    
T  41878592 ttgccacaattcaataaggtgtggctgaaaaataggaagtaaacaaataaatcatgcaattaaaacttgtcagttatgtcttgaaaaattcttgatgcta 41878691  T
Q  185 tttttctagataaatagcattttc 208  Q
    |||||||| |||||||||||||||    
T  41878692 tttttctaaataaatagcattttc 41878715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 68 - 211
Target Start/End: Complemental strand, 4512303 - 4512159
Alignment:
Q  68 caatcacaatgcactatttgccacaattcaaggaggtgtggctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttg 167  Q
    ||||||||||  ||||||||||||||||||||||| |||| || ||||||||||||| ||||||||||| |||||||||||| ||| || ||| || |||    
T  4512303 caatcacaatatactatttgccacaattcaaggagatgtgactgaaaaataggaagtaaacaaataaatgatgcaattaaaacttgccacctgagtattg 4512204  T
Q  168 aaaaattcttaatgctat-ttttctagataaatagcattttcctt 211  Q
    |||||||||| ||||||| ||||||||| ||||| ||||||||||    
T  4512203 aaaaattcttgatgctattttttctagagaaataacattttcctt 4512159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 48 - 209
Target Start/End: Complemental strand, 47839102 - 47838942
Alignment:
Q  48 cttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggctaaaaaataggaagtgaacaaataaatcatgcaattaa 147  Q
    ||||||||||||||||||  ||| ||||||| |||||||||||||||| |||||||||||||  |||||||| || |||||||| | |||||||||||||    
T  47839102 cttcaagaataaagagcagtcaaccacaatgtactatttgccacaatttaaggaggtgtggccgaaaaatagaaaatgaacaaaaacatcatgcaattaa 47839003  T
Q  148 aatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcattttcc 209  Q
    |  |   || |||||||||| ||||||||| ||||||||||| |||| ||||||||| ||||    
T  47839002 atctcaccagctgtgtcttg-aaaattcttgatgctatttttatagagaaatagcatgttcc 47838942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 13 - 209
Target Start/End: Complemental strand, 54021432 - 54021241
Alignment:
Q  13 aatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggctaa 112  Q
    |||||||||||| |||||||||||||| || ||||||||||        |||| |||||||||||||||||| |||||||||| |||||||||||| | |    
T  54021432 aatgttatatctttagaaaaataacattaaaaattcttcaa--------agcagccaatcacaatgcactatgtgccacaatttaaggaggtgtggttga 54021341  T
Q  113 aaaataggaagtgaacaaataaatca---tgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcattttcc 209  Q
    ||||||| |||| |||||||||| ||      |||||||| |||||| || | |||| |||||||||| |||||||||||||||| ||||| ||||||||    
T  54021340 aaaatagaaagtaaacaaataaagcaattaaaaattaaaacttgtcagctttatcttaaaaaattcttgatgctatttttctagagaaataacattttcc 54021241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 41878321 - 41878406
Alignment:
Q  9 gagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaat 94  Q
    |||||||||| ||||| |||||||||||||||| |||||||||| ||||||||| || |||||||||||||||||||||| |||||    
T  41878321 gagcaatgttgtatctatagaaaaataacatcatgaattcttcatgaataaagatcagccaatcacaatgcactatttgctacaat 41878406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 4098580 - 4098532
Alignment:
Q  9 gagcaatgttatatctctagaaaaataacatcaagaattcttcaagaat 57  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4098580 gagcaatgttatatctctagaaaaataacatcaagaattcttcaagaat 4098532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 124 - 209
Target Start/End: Complemental strand, 41497977 - 41497890
Alignment:
Q  124 tgaacaaataaatcatgcaattaaaatttgtcaac--tgtgtcttgaaaaattcttaatgctatttttctagataaatagcattttcc 209  Q
    |||||||||||||||||||||||||| || |||||  ||||||||||| |||| || ||||||||||| |||| ||||||||||||||    
T  41497977 tgaacaaataaatcatgcaattaaaacttatcaactgtgtgtcttgaataatttttgatgctatttttttagagaaatagcattttcc 41497890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 30508941 - 30509076
Alignment:
Q  8 tgagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtg 107  Q
    |||||| |||||||||||||||||   | ||||| ||  |||||||||||||||||||  |||| ||||| ||||||||||| |||| ||  ||| |||     
T  30508941 tgagcagtgttatatctctagaaagggagcatcatgatctcttcaagaataaagagcagtcaattacaatacactatttgccgcaatacacagagatgta 30509040  T
Q  108 gctaaaaaataggaagtgaacaaataaatcatgcaat 144  Q
     || ||||||||||| ||||| ||||| |||||||||    
T  30509041 actgaaaaataggaaatgaac-aataagtcatgcaat 30509076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 210
Target Start/End: Original strand, 52726030 - 52726073
Alignment:
Q  167 gaaaaattcttaatgctatttttctagataaatagcattttcct 210  Q
    ||||||||||| |||||||||||||||| |||||||||||||||    
T  52726030 gaaaaattcttgatgctatttttctagagaaatagcattttcct 52726073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 18375394 - 18375436
Alignment:
Q  13 aatgttatatctctagaaaaataacatcaagaattcttcaaga 55  Q
    |||||||| |||||||||||||| ||||||||||| |||||||    
T  18375394 aatgttatttctctagaaaaatagcatcaagaatttttcaaga 18375436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 54358308 - 54358266
Alignment:
Q  13 aatgttatatctctagaaaaataacatcaagaattcttcaaga 55  Q
    |||||||| |||||||||||||| ||||||||||| |||||||    
T  54358308 aatgttatttctctagaaaaatagcatcaagaatttttcaaga 54358266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 37
Target Start/End: Original strand, 54358102 - 54358130
Alignment:
Q  9 gagcaatgttatatctctagaaaaataac 37  Q
    |||||||||||||||||||||||||||||    
T  54358102 gagcaatgttatatctctagaaaaataac 54358130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 7 - 216
Target Start/End: Complemental strand, 23643180 - 23642971
Alignment:
Q  7 ctgagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgt 106  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |  |  |||||||||||||||||||||||||||||||||||||||    
T  23643180 ctgagcaatgttgtatctctagaaaaataacatcaagaattcttcaagaataaatattagtcaatcacaatgcactatttgccacaattcaaggaggtgt 23643081  T
Q  107 ggctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcattt 206  Q
    | |||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||    
T  23643080 gactaaaaaataggaagtgaacaaataaattatggaattaaaatttgtcagctgtgtcttgaaaaattcttgatgctatttttctagagaaatagcattt 23642981  T
Q  207 tccttgctat 216  Q
    ||||| ||||    
T  23642980 tcctttctat 23642971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 9 - 209
Target Start/End: Complemental strand, 521963 - 521763
Alignment:
Q  9 gagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtgg 108  Q
    |||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  521963 gagcaatgctatatatctagataaataacatcaagaattcttcaagaataaagagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 521864  T
Q  109 ctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcattttc 208  Q
    || |||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||| ||| ||||| ||||||||||||||||||||    
T  521863 ctgaaaaataggaagtgaacaaataaatcatgcaattaaaacttgacaactgtgtcttaaaaaattcttgatgatatttgtctagataaatagcattttc 521764  T
Q  209 c 209  Q
    |    
T  521763 c 521763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 8 - 207
Target Start/End: Original strand, 45166225 - 45166424
Alignment:
Q  8 tgagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  45166225 tgagcaatgttatatctctagaaaaataacatcaagaattcttcaataataaagagcagccaatcacaatgcactatttgccacaattcaaggaggcgtg 45166324  T
Q  108 gctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcatttt 207  Q
    ||| ||||||||| |||| ||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||| ||||| ||||||    
T  45166325 gctgaaaaatagggagtggacaaataaatcatgcaattaaaatttgccaactgcgtcttgaaaaattcttgatgctatttttctagagaaataacatttt 45166424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 8 - 207
Target Start/End: Complemental strand, 38176589 - 38176390
Alignment:
Q  8 tgagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtg 107  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||    
T  38176589 tgagcaatgttatatctctagaaaaatatcatcaagaattcttcaagaataaagagcagccaatcgcaatgcactatttgcctcaattcaaggaggtgtg 38176490  T
Q  108 gctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcatttt 207  Q
    ||| ||||||| |||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| | ||||| ||||||    
T  38176489 gctgaaaaatatgaagtgaacaaataaaacatgcaattaaaacttgccaactgtgtcttgaaaaattcttaatgctatttttctaaagaaatatcatttt 38176390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 9 - 211
Target Start/End: Original strand, 36517514 - 36517716
Alignment:
Q  9 gagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtgg 108  Q
    |||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||     
T  36517514 gagcaatgctatatatctagacaaataacatcaagaattcttcaagaataaagagcagtcaatcacaatgcactatttgccacaattcaaggaggtgtga 36517613  T
Q  109 ctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcattttc 208  Q
     |||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||| | | ||||| ||||||||||||||||||||    
T  36517614 ataaaaaataggaagtgaacaaataaatcatgcaattaaaacttgccaactgtgttttgaaaaattcttgaagttatttatctagataaatagcattttc 36517713  T
Q  209 ctt 211  Q
    |||    
T  36517714 ctt 36517716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 8 - 177
Target Start/End: Complemental strand, 1561455 - 1561286
Alignment:
Q  8 tgagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtg 107  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1561455 tgagcagtgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtg 1561356  T
Q  108 gctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattctt 177  Q
    ||| |||||||||||||||||||||||||||||||||| ||| |||||| ||||||||  ||||||||||    
T  1561355 gctgaaaaataggaagtgaacaaataaatcatgcaattgaaacttgtcagctgtgtctgaaaaaattctt 1561286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 50613072 - 50612871
Alignment:
Q  10 agcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggc 109  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |    
T  50613072 agcaatgctatatctctagaaaaataacatcaagaattcttcaagaataaagagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgac 50612973  T
Q  110 taaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcattttcc 209  Q
    | |||||||  |||||||||||||||| |||||||||||| |||||| |||||| ||||||||||||| ||||| ||||| |||| ||||| ||||||||    
T  50612972 tgaaaaatataaagtgaacaaataaattatgcaattaaaacttgtcagctgtgtattgaaaaattcttgatgctgtttttatagagaaataacattttcc 50612873  T
Q  210 tt 211  Q
    ||    
T  50612872 tt 50612871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 9 - 211
Target Start/End: Original strand, 31788305 - 31788507
Alignment:
Q  9 gagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtgg 108  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||     
T  31788305 gagcaatgatatatctctagaaaaataacatcaagaattcttcaagaataaagagcagccaatcacaatgcactatttaccacaattcaaggaggtgtga 31788404  T
Q  109 ctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcattttc 208  Q
     | |||||||||||||||||||||||||| |||| |||||| ||||||| ||||||||||||||||||| | | ||||||| |||| ||||| |||||||    
T  31788405 ttgaaaaataggaagtgaacaaataaatcttgcagttaaaacttgtcaattgtgtcttgaaaaattcttgaagttatttttatagagaaataacattttc 31788504  T
Q  209 ctt 211  Q
    |||    
T  31788505 ctt 31788507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 12 - 212
Target Start/End: Original strand, 39145254 - 39145454
Alignment:
Q  12 caatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggcta 111  Q
    ||||| ||||||||||||||||||| ||||||||||||| ||||||||| |||| ||||| |||||||||||||||| ||||||||| ||||| || ||     
T  39145254 caatgctatatctctagaaaaataatatcaagaattctttaagaataaaaagcagccaattacaatgcactatttgctacaattcaatgaggtatgactg 39145353  T
Q  112 aaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcattttcctt 211  Q
    ||||||||||| |||||||| ||||||| ||||||||| ||| |||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||    
T  39145354 aaaaataggaaatgaacaaagaaatcatacaattaaaacttgacaactgtgtcttgacaaattcttgatgctatttttctagagaaatagcattttcctt 39145453  T
Q  212 g 212  Q
    |    
T  39145454 g 39145454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 13 - 209
Target Start/End: Original strand, 52546746 - 52546942
Alignment:
Q  13 aatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggctaa 112  Q
    |||| ||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||  ||||||| |||||||||| ||||||||  | |    
T  52546746 aatgatatatctttagaaaaataacatcaaaaattcttcaagaataaagagcagccaatcacaatgtgctatttgtcacaattcaatgaggtgtgagtga 52546845  T
Q  113 aaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcattttcc 209  Q
    |||||||||| ||||||||||||| |||||||||||| |||| |  ||||||||| ||||||||| |||| ||||||||||| ||||||||||||||    
T  52546846 aaaataggaaatgaacaaataaattatgcaattaaaacttgtaaggtgtgtcttggaaaattcttgatgcaatttttctagagaaatagcattttcc 52546942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 9 - 209
Target Start/End: Complemental strand, 34624674 - 34624486
Alignment:
Q  9 gagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtgg 108  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||  |||| ||||||    
T  34624674 gagcaatgctatatctctagaaaaataacat-aagaattcttcaagaataaagagcagccaatcacaatgcactatttaccacaatttgaggaagtgtgg 34624576  T
Q  109 ctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcattttc 208  Q
    || ||||||||||||||||||||||||||||||||||||||||           |||| |||||||||| |||||||||||||||| ||||| |||||||    
T  34624575 ctgaaaaataggaagtgaacaaataaatcatgcaattaaaatt-----------tcttaaaaaattcttgatgctatttttctagagaaataacattttc 34624487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 20912177 - 20912350
Alignment:
Q  19 atatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggctaaaaaata 118  Q
    |||||| || |||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||| || |||| ||||||||||| || |||||||    
T  20912177 atatctttaaaaaaataacatcaagaattcttcaagaataaagagcagtcaataacaatgcactatttgtcataatttaaggaggtgtgactgaaaaata 20912276  T
Q  119 ggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttcta 192  Q
    ||||||||||||||||||||||||||||||| || ||| || |||||| |||||||||| ||||||||||||||    
T  20912277 ggaagtgaacaaataaatcatgcaattaaaacttatcagctatgtctttaaaaattcttgatgctatttttcta 20912350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 13 - 211
Target Start/End: Complemental strand, 51297219 - 51297020
Alignment:
Q  13 aatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggctaa 112  Q
    |||||||||||||||||||||||||||||||| | ||||||| ||||||| || |||| |||||||||||||||||||||||||||  |||| || || |    
T  51297219 aatgttatatctctagaaaaataacatcaagagt-cttcaagcataaagaacagccaaccacaatgcactatttgccacaattcaaaaaggtatgactga 51297121  T
Q  113 aaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaac-tgtgtcttgaaaaattcttaatgcta-tttttctagataaatagcattttcct 210  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||| || ||||||||||| | || |||||| ||||| |||| ||||| |||||||||    
T  51297120 aaaatagaaagtgaacaaataaatcatgcaattaaaatttatcaacttgcgtcttgaaaaaattttgatgctattttttttagagaaataacattttcct 51297021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 46 - 148
Target Start/End: Original strand, 9496567 - 9496669
Alignment:
Q  46 ttcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggctaaaaaataggaagtgaacaaataaatcatgcaatt 145  Q
    |||||||||||||||||| | ||||||||||| |||| ||||||||||| ||  | ||||| ||| ||||||||| ||||||||||||||||||||| ||    
T  9496567 ttcttcaagaataaagagtagccaatcacaattcactgtttgccacaatacacagtggtgttgctgaaaaatagggagtgaacaaataaatcatgcagtt 9496666  T
Q  146 aaa 148  Q
    |||    
T  9496667 aaa 9496669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 43203248 - 43203318
Alignment:
Q  9 gagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgc 79  Q
    |||||||| ||||| |||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  43203248 gagcaatgctatatttctaaaaaaataacatcaagaattcttcaaaaataaagagcagccaatcacaatgc 43203318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 149
Target Start/End: Complemental strand, 22650594 - 22650454
Alignment:
Q  9 gagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtgg 108  Q
    |||||||| ||||||| ||||||| ||||||||     |||| ||||||||||| ||  |||| ||||  || ||| || ||||||| ||||||||||||    
T  22650594 gagcaatgctatatctttagaaaagtaacatcacagtctctttaagaataaagaacagtcaattacaaatcattatctgacacaatttaaggaggtgtgg 22650495  T
Q  109 ctaaaaaataggaagtgaacaaataaatcatgcaattaaaa 149  Q
    || |||| ||  |||||||||||||||||||||||||||||    
T  22650494 ctgaaaagtaaaaagtgaacaaataaatcatgcaattaaaa 22650454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 544634 - 544687
Alignment:
Q  9 gagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaaga 62  Q
    |||||||  ||||||||||||||||||||| |||||||||||||||||||||||    
T  544634 gagcaatcctatatctctagaaaaataacaccaagaattcttcaagaataaaga 544687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 130
Target Start/End: Complemental strand, 38169410 - 38169329
Alignment:
Q  47 tcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggctaaaaaataggaagtgaacaa 130  Q
    ||||||| ||||||||| |  |||||||||| ||||  ||| |||||| |||||||||||| ||||||||||||||||||||||    
T  38169410 tcttcaataataaagagtagtcaatcacaatccact--ttgtcacaatacaaggaggtgtgactaaaaaataggaagtgaacaa 38169329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 11358880 - 11358938
Alignment:
Q  9 gagcaatgttatatctctagaaaaataacat-caagaattcttcaagaataaagagcaa 66  Q
    |||||||| ||||||||||||||||||||||  || ||||||||| |||||||||||||    
T  11358880 gagcaatgctatatctctagaaaaataacataaaaaaattcttcacgaataaagagcaa 11358938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 148
Target Start/End: Original strand, 15461578 - 15461680
Alignment:
Q  46 ttcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggctaaaaaataggaagtgaacaaataaatcatgcaatt 145  Q
    |||||||||||||||||| | ||||||||||| |  |  ||| |||||| || |  |||||  || ||||||| ||||||||||||||||||||||| ||    
T  15461578 ttcttcaagaataaagagtagccaatcacaattcggtgcttgacacaatacacgatggtgttactgaaaaataagaagtgaacaaataaatcatgcagtt 15461677  T
Q  146 aaa 148  Q
    |||    
T  15461678 aaa 15461680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 45166422 - 45166380
Alignment:
Q  13 aatgttatatctctagaaaaataacatcaagaattcttcaaga 55  Q
    |||||||| |||||||||||||| ||||||||||| |||||||    
T  45166422 aatgttatttctctagaaaaatagcatcaagaatttttcaaga 45166380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 29011379 - 29011343
Alignment:
Q  68 caatcacaatgcactatttgccacaattcaaggaggt 104  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  29011379 caatcacaatgtactatttaccacaattcaaggaggt 29011343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 10 - 210
Target Start/End: Complemental strand, 31032895 - 31032695
Alignment:
Q  10 agcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggc 109  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||  ||||||||||||||||||||||||| ||||||||||||||||    
T  31032895 agcaatgttatatctctagaaaaatatcatcaagaattcttcaagaataaagatcagtcaatcacaatgcactatttgccacagttcaaggaggtgtggc 31032796  T
Q  110 taaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcattttcc 209  Q
    | |||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||| ||||| ||||||||    
T  31032795 tgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgtcaactgtatcttgaaaaattcttgatgctatttttctagaaaaataacattttcc 31032696  T
Q  210 t 210  Q
    |    
T  31032695 t 31032695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 13 - 211
Target Start/End: Original strand, 1270175 - 1270373
Alignment:
Q  13 aatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggctaa 112  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |    
T  1270175 aatgctatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatctcaatgcactatttgccacaattcaagaaggtgtggctga 1270274  T
Q  113 aaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcattttcctt 211  Q
    ||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||| || |||||||||||||||| |||||| | |||||||    
T  1270275 aaaataggaagtgaataaataaatcgtgcaattaaaacttgtcaactgtgtcttgaaaaatttttgatgctatttttctagagaaatagtagtttcctt 1270373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 9 - 210
Target Start/End: Original strand, 34475899 - 34476100
Alignment:
Q  9 gagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtgg 108  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||    
T  34475899 gagcaatgctatatctctagaaaaataacatcaagaattcttcaagaataaagagcagccaatcacaatgcactatctgccccaattcaaggaggtgtgg 34475998  T
Q  109 ctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcattttc 208  Q
    || ||||||||||||||||||||| |||||||||||||||| |||||| || ||||||||||||||||| || ||||||||||||| ||||||| |||||    
T  34475999 ctgaaaaataggaagtgaacaaatcaatcatgcaattaaaacttgtcagctttgtcttgaaaaattcttgatactatttttctagagaaatagccttttc 34476098  T
Q  209 ct 210  Q
    ||    
T  34476099 ct 34476100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 8 - 200
Target Start/End: Complemental strand, 29095722 - 29095530
Alignment:
Q  8 tgagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29095722 tgagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcagccaatcacaatgcactatttgccacaattcaaggaggtgtg 29095623  T
Q  108 gctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaata 200  Q
    ||| |||||||||||||||||||| | ||||||||||||||| ||| ||||| ||||||||||| || || |||||||||||||||| |||||    
T  29095622 gctgaaaaataggaagtgaacaaagatatcatgcaattaaaacttggcaactatgtcttgaaaattttttgatgctatttttctagagaaata 29095530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 9 - 211
Target Start/End: Original strand, 16254855 - 16255056
Alignment:
Q  9 gagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtgg 108  Q
    ||||||| |||||||| | |||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||| |||| ||||||||||||    
T  16254855 gagcaatattatatctttggaaaaataacat-aagaattcttcaagaataaagatcagccaatcacaatgcactatttgccataatttaaggaggtgtgg 16254953  T
Q  109 ctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcattttc 208  Q
    || || ||||||||||||||||||||||||| |||||||| |||||||  ||||| ||||||||||||| |||||||||||||||| |||||||||||||    
T  16254954 ctgaataataggaagtgaacaaataaatcatacaattaaattttgtcagttgtgtattgaaaaattcttgatgctatttttctagagaaatagcattttc 16255053  T
Q  209 ctt 211  Q
    |||    
T  16255054 ctt 16255056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 8 - 211
Target Start/End: Original strand, 20808946 - 20809149
Alignment:
Q  8 tgagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtg 107  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||| ||||    
T  20808946 tgagcaatgctatatctctagaaaaataacatcaagaattcttcaagaataaagagcagtcaatcacaatgcattatttgccacaattcaaggagatgtg 20809045  T
Q  108 gctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcatttt 207  Q
    ||| |||| |||||||||||| |||||| |||| |||||||| ||| || | || ||||||||||||||| |||||||||||||||| |||||  |||||    
T  20809046 gctgaaaactaggaagtgaacgaataaaccatgtaattaaaacttgccacccgtatcttgaaaaattcttgatgctatttttctagagaaataaaatttt 20809145  T
Q  208 cctt 211  Q
    ||||    
T  20809146 cctt 20809149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 8 - 206
Target Start/End: Complemental strand, 9098766 - 9098571
Alignment:
Q  8 tgagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtg 107  Q
    |||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||   |||||| |||||||    
T  9098766 tgagtaatgatatatctctagaaaaataacatcaagaattctttaagaataaagagcagccaatcacaatgcactatctgcca---ttcaagaaggtgtg 9098670  T
Q  108 gctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcattt 206  Q
    ||| || |||| |||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||| |||||||||||||||| ||| |||||||    
T  9098669 gctgaataatacgaagtgaacaaataaatcatgcaattaaaacttgtcagctgtgttttgaaaaattcttgatgctatttttctagagaaaaagcattt 9098571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 9 - 208
Target Start/End: Original strand, 47550791 - 47550990
Alignment:
Q  9 gagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtgg 108  Q
    ||||||||  ||||||||| ||||||||||| || ||   ||||||||||||||||| | ||| ||||||||||||||||||||||| |||||||||||     
T  47550791 gagcaatgcaatatctctataaaaataacattaaaaaaatttcaagaataaagagcagcaaattacaatgcactatttgccacaatttaaggaggtgtga 47550890  T
Q  109 ctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcattttc 208  Q
    |||||||||||||| |||||| ||||||||||||||||||| ||| || |||| ||||||||||||||| |||||||||||||||| ||||| |||||||    
T  47550891 ctaaaaaataggaaatgaacatataaatcatgcaattaaaacttgccagctgtttcttgaaaaattcttgatgctatttttctagagaaataacattttc 47550990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 13 - 211
Target Start/End: Original strand, 45010204 - 45010401
Alignment:
Q  13 aatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggctaa 112  Q
    |||| |||||||||| ||| |||||||||||||||||| |||||||||||||| ||||  | |||||| |||||| ||||||||| | |||||||||| |    
T  45010204 aatgctatatctctaaaaagataacatcaagaattctttaagaataaagagcatccaaatataatgcattatttgtcacaattca-gaaggtgtggctga 45010302  T
Q  113 aaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcattttcctt 211  Q
    |||||| |||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||| |||||||||||||||| ||||| ||| ||||||    
T  45010303 aaaataagaagtgaacaaataaatcatgcaattaaaatttgtcagatgtgttttgaaaaattctttatgctatttttctagagaaataacatcttcctt 45010401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 9 - 149
Target Start/End: Original strand, 24135755 - 24135893
Alignment:
Q  9 gagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtgg 108  Q
    ||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||    
T  24135755 gagcaatgacatatctcaagaaaaataacatcaagaattcttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtgg 24135852  T
Q  109 ctaaaaaataggaagtgaacaaataaatcatgcaattaaaa 149  Q
    || ||||||||||||||||||||||||||||||||||||||    
T  24135853 ctgaaaaataggaagtgaacaaataaatcatgcaattaaaa 24135893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 9 - 211
Target Start/End: Original strand, 42480121 - 42480325
Alignment:
Q  9 gagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtgg 108  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||  |||| |||||| | ||||| ||||||||||| |||||||||    
T  42480121 gagcaatgttatatctctacaaaaataacatcaagaattcttcaagaataaatagcagtcaattacaatgtattatttaccacaattcaatgaggtgtgg 42480220  T
Q  109 ctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtg--tcttgaaaaattcttaatgctatttttctagataaatagcattt 206  Q
    || |||||||| || |||| |||||||| |||||||||||| |||    |||||  ||||||||||||||| |||||||||||||||| ||||| |||||    
T  42480221 ctgaaaaatagaaaatgaataaataaattatgcaattaaaacttgcatgctgtgtctcttgaaaaattcttgatgctatttttctagagaaataacattt 42480320  T
Q  207 tcctt 211  Q
    |||||    
T  42480321 tcctt 42480325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 9 - 207
Target Start/End: Original strand, 34807936 - 34808134
Alignment:
Q  9 gagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtgg 108  Q
    ||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||  ||||||||||| |||||||  || |||| ||||||||||||    
T  34807936 gagcaattttatatctctcgaaaaataacatcaagaattcttcaaaaataaagagcagtcaatcacaatgtactatttatcataatttaaggaggtgtgg 34808035  T
Q  109 ctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcatttt 207  Q
    || ||||||| |||||||| ||||||||||||||||||||| |||  |  ||| ||||||||||    | |||||||||||||| | ||||| ||||||    
T  34808036 ctgaaaaatatgaagtgaataaataaatcatgcaattaaaacttgctagttgtctcttgaaaaaaaaattatgctatttttctaaagaaataacatttt 34808134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 65 - 194
Target Start/End: Complemental strand, 2958834 - 2958710
Alignment:
Q  65 aaccaatcacaatgcactatttgccacaattcaaggaggtgtggctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtc 164  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||     || || |||||||    
T  2958834 aaccaatcacaatgcactatttgccaaaattcaaggaggtgtggctgaaaaatagggagtgaacaaataaatcatgcaatta-----tgccagctgtgtc 2958740  T
Q  165 ttgaaaaattcttaatgctatttttctaga 194  Q
    ||||||||||||| ||| ||||||||||||    
T  2958739 ttgaaaaattcttgatgttatttttctaga 2958710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 22 - 209
Target Start/End: Complemental strand, 44714985 - 44714807
Alignment:
Q  22 tctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggctaaaaaatagga 121  Q
    |||||||||||||||||||||||||         ||||||||||  ||||||||||||| ||||||||||||||||| ||| ||||||| |||||||  |    
T  44714985 tctctagaaaaataacatcaagaat---------ataaagagcagtcaatcacaatgcattatttgccacaattcaacgagatgtggctgaaaaataaaa 44714895  T
Q  122 agtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcattttcc 209  Q
    | | || ||||||||||| ||||||||| ||| ||||| | ||||||||||||||| || ||||||||||||| ||||| ||||||||    
T  44714894 aataaaaaaataaatcatacaattaaaacttgccaactatatcttgaaaaattcttgatactatttttctagaaaaataacattttcc 44714807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 10 - 134
Target Start/End: Original strand, 4194767 - 4194891
Alignment:
Q  10 agcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggc 109  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||  ||||||| ||| ||||||| ||| | || |    
T  4194767 agcaatgctatatctctagaaaaataacatcaagaattcttcaagaataaagaacagtcaatcacaatatactatttaccataattcaaagagatatgac 4194866  T
Q  110 taaaaaataggaagtgaacaaataa 134  Q
    | |||||||||||||||||||||||    
T  4194867 tgaaaaataggaagtgaacaaataa 4194891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 41646576 - 41646660
Alignment:
Q  9 gagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaat 94  Q
    |||||||| | |||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  41646576 gagcaatgctgtatctctagaaaaataacatca-gaattcttcaagaataaagagcagtcaatcacaatgcactatttgccacaat 41646660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 102 - 211
Target Start/End: Original strand, 4624438 - 4624540
Alignment:
Q  102 ggtgtggctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatag 201  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| |       || |||||||| ||||||| |||||||||||||||| ||||||    
T  4624438 ggtgtggctgaaaaataggaagtgaacaaataaatcatgcaattaaaact-------tgagtcttgaataattcttgatgctatttttctagagaaatag 4624530  T
Q  202 cattttcctt 211  Q
    ||||||||||    
T  4624531 cattttcctt 4624540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 41647356 - 41647424
Alignment:
Q  138 atgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcattt 206  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  41647356 atgcaattaaaacttgtcaactgtgtcttgaaaaattcttgatgctatttttctagagaaatagcattt 41647424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 117
Target Start/End: Original strand, 50663730 - 50663839
Alignment:
Q  9 gagcaatgttatatctctagaaaa-ataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtg 107  Q
    |||||||| |||||||||| |||| |||||||||| |||| | |||||||||||||||   ||| | |||||| ||||| |||||||||||||| |||||    
T  50663730 gagcaatgctatatctctaaaaaaaataacatcaaaaattttacaagaataaagagcagtgaatgataatgcattatttaccacaattcaaggacgtgtg 50663829  T
Q  108 gctaaaaaat 117  Q
     || ||||||    
T  50663830 actgaaaaat 50663839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 7167523 - 7167455
Alignment:
Q  9 gagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaat 77  Q
    |||||||| ||||| |||| ||||||||| |||||||||||||||||||||||| ||  ||||||||||    
T  7167523 gagcaatgctatatttctaaaaaaataacgtcaagaattcttcaagaataaagaacagtcaatcacaat 7167455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 163
Target Start/End: Complemental strand, 27143746 - 27143603
Alignment:
Q  20 tatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggctaaaaaatag 119  Q
    ||||||||||||||||| ||||  |  |||| ||||||||| |||   ||||||||||| | ||||||| |||||| || ||||||||  | ||||||||    
T  27143746 tatctctagaaaaataatatcaccatctctttaagaataaaaagccgtcaatcacaatgtattatttgctacaatttaaagaggtgtgattgaaaaatag 27143647  T
Q  120 gaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgt 163  Q
    ||||| |||||||| || || |||| || | ||| |||||||||    
T  27143646 gaagtaaacaaatacataatacaataaacacttgccaactgtgt 27143603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 144
Target Start/End: Original strand, 48148796 - 48148920
Alignment:
Q  15 tgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggctaaaa 114  Q
    ||||||||||||||||||| |  ||||  |  |||||||||||||||| ||  ||||| ||||||||||||| |||||||    |||| ||||||| |||    
T  48148796 tgttatatctctagaaaaagagtatcacaatctcttcaagaataaagaccagtcaatcccaatgcactattttccacaat----ggagatgtggctgaaa 48148891  T
Q  115 aataggaagtgaacaaataaatcatgcaat 144  Q
    ||||  |||||||  |||||||||||||||    
T  48148892 aataaaaagtgaa-taataaatcatgcaat 48148920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 2958869 - 2958833
Alignment:
Q  9 gagcaatgttatatctctagaaaaataacatcaagaa 45  Q
    |||||||| ||||||||||||||||||||||||||||    
T  2958869 gagcaatgctatatctctagaaaaataacatcaagaa 2958833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 47550987 - 47550944
Alignment:
Q  13 aatgttatatctctagaaaaataacatcaagaattcttcaagaa 56  Q
    |||||||| |||||||||||||| ||||||||||| ||||||||    
T  47550987 aatgttatttctctagaaaaatagcatcaagaatttttcaagaa 47550944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 42480319 - 42480277
Alignment:
Q  13 aatgttatatctctagaaaaataacatcaagaattcttcaaga 55  Q
    |||||||| |||||||||||||| ||||||||||| |||||||    
T  42480319 aatgttatttctctagaaaaatagcatcaagaatttttcaaga 42480277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 9 - 210
Target Start/End: Complemental strand, 23992149 - 23991948
Alignment:
Q  9 gagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtgg 108  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  23992149 gagcaatgttatatctctacaaatataacatcaagaattcttcaagaataaagagcagcctatcacaatgcactatttgccacaattcaaggaggtgtgg 23992050  T
Q  109 ctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcattttc 208  Q
    || |||||||| ||||||||||| | ||||||||||||||| ||||||  ||||||||||||||||||| || |||| |||||||| |||||||||||||    
T  23992049 ctgaaaaatagaaagtgaacaaaaatatcatgcaattaaaacttgtcagttgtgtcttgaaaaattcttgatactatgtttctagagaaatagcattttc 23991950  T
Q  209 ct 210  Q
    ||    
T  23991949 ct 23991948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 12 - 188
Target Start/End: Complemental strand, 27425949 - 27425773
Alignment:
Q  12 caatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggcta 111  Q
    ||||| ||||||| ||||||||||||||||||||||||| ||||||||||| ||  ||||||||||||| ||||||||||||||||||||| ||||| |     
T  27425949 caatgctatatctttagaaaaataacatcaagaattcttaaagaataaagaacagtcaatcacaatgcattatttgccacaattcaaggagttgtggttg 27425850  T
Q  112 aaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttt 188  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| || ||||||||||    
T  27425849 aaaaataggaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattgttgatgctatttt 27425773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 17611842 - 17612005
Alignment:
Q  9 gagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtgg 108  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||| | ||||||||||||||||||||| |||||    
T  17611842 gagcaatgctatatcgctagaaaaataacatcaagaattcttcaagaataaagaacaaccaatcataatgaattatttgccacaattcaaggagatgtgg 17611941  T
Q  109 ctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaa 172  Q
    ||||||||||||||||||| ||||||||||| ||||||||| ||||||  |||||||| |||||    
T  17611942 ctaaaaaataggaagtgaataaataaatcatacaattaaaacttgtcagttgtgtcttaaaaaa 17612005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 9 - 217
Target Start/End: Original strand, 8307525 - 8307731
Alignment:
Q  9 gagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtgg 108  Q
    |||||||| | ||| |||||||||||||||||||||||| || |||||||||||  |  |||||| ||||||||||| ||||||||||||||   |||||    
T  8307525 gagcaatgctgtatatctagaaaaataacatcaagaattttttaagaataaagacgagtcaatcataatgcactattagccacaattcaagg---tgtgg 8307621  T
Q  109 ctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaa-ttcttaatgctatttttctagataaatagcatttt 207  Q
    || ||||||||||||||||||||||||||||||| |||||||||| ||  |||||||||||||| || |  ||||||||||||| || ||||| ||||||    
T  8307622 ctcaaaaataggaagtgaacaaataaatcatgcagttaaaatttgccagttgtgtcttgaaaaatttgtcgatgctatttttcttgagaaatatcatttt 8307721  T
Q  208 ccttgctata 217  Q
    |||| |||||    
T  8307722 cctttctata 8307731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 9 - 149
Target Start/End: Original strand, 22326858 - 22326998
Alignment:
Q  9 gagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtgg 108  Q
    ||||| || ||||||| ||||||||||||||||||||||||||||||| |||||||   ||||||||||| |||||||||||||||||| |||||||||     
T  22326858 gagcagtgctatatctttagaaaaataacatcaagaattcttcaagaagaaagagccgtcaatcacaatgtactatttgccacaattcagggaggtgtga 22326957  T
Q  109 ctaaaaaataggaagtgaacaaataaatcatgcaattaaaa 149  Q
    || |||||||| |||||||||||||||||||||||||||||    
T  22326958 ctgaaaaatagaaagtgaacaaataaatcatgcaattaaaa 22326998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 69 - 211
Target Start/End: Original strand, 42195437 - 42195579
Alignment:
Q  69 aatcacaatgcactatttgccacaattcaaggaggtgtggctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttga 168  Q
    |||| ||||||||||||| |||||||||||||||||||| || ||||||| | |||||||||||||||||||||||||||| || | |  ||| |||| |    
T  42195437 aatctcaatgcactatttaccacaattcaaggaggtgtgtctgaaaaataaggagtgaacaaataaatcatgcaattaaaactttttagttgtatcttaa 42195536  T
Q  169 aaaattcttaatgctatttttctagataaatagcattttcctt 211  Q
    ||||||||| ||| |||||||||||| ||||| ||||||||||    
T  42195537 aaaattcttgatgttatttttctagagaaataacattttcctt 42195579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 50 - 209
Target Start/End: Original strand, 25686406 - 25686563
Alignment:
Q  50 tcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggctaaaaaataggaagtgaacaaat---aaatcatgcaatta 146  Q
    ||||||||||||| ||| |||||| |||| ||||||| |||||||| ||||||||||||||  |||||||||||| |||||||    |||||| |||| |    
T  25686406 tcaagaataaagaacaatcaatcataatgtactatttaccacaatttaaggaggtgtggctggaaaataggaagtaaacaaattaataatcatacaatca 25686505  T
Q  147 aaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcattttcc 209  Q
    ||| ||||| |     |||||||||||||||||| |||||||| || | ||||| ||||||||    
T  25686506 aaacttgtcga-----tcttgaaaaattcttaatactatttttgtaaagaaataacattttcc 25686563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 19479441 - 19479508
Alignment:
Q  9 gagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaa 76  Q
    |||||||| ||||||||||||||||||||||||| |||||||||| ||||||||| || |||||||||    
T  19479441 gagcaatgctatatctctagaaaaataacatcaaaaattcttcaaaaataaagagtaatcaatcacaa 19479508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 41405904 - 41405797
Alignment:
Q  18 tatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggctaaaaaat 117  Q
    |||||||||||||||  || |||| ||  ||||||||||||||||| |  |  |||||||||||||||||||||||| ||||||||| ||| | ||||||    
T  41405904 tatatctctagaaaaggaatatcacgatctcttcaagaataaagaggagtcggtcacaatgcactatttgccacaatacaaggaggtatggttgaaaaat 41405805  T
Q  118 aggaagtg 125  Q
    || |||||    
T  41405804 agtaagtg 41405797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 42195573 - 42195539
Alignment:
Q  13 aatgttatatctctagaaaaataacatcaagaatt 47  Q
    |||||||| ||||||||||||||||||||||||||    
T  42195573 aatgttatttctctagaaaaataacatcaagaatt 42195539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 42195390 - 42195422
Alignment:
Q  11 gcaatgttatatctctagaaaaataacatcaag 43  Q
    |||||||||||||||||||||||||| ||||||    
T  42195390 gcaatgttatatctctagaaaaataaaatcaag 42195422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 39112658 - 39112848
Alignment:
Q  19 atatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggctaaaaaata 118  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||    
T  39112658 atatctctagaaaaataacatcaagaattcttcaaaaataaagagcaaccaatcacaatgcactatttgccataattcaaggaggtgcggctgaaaaata 39112757  T
Q  119 ggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcattttcc 209  Q
    | ||||||||||||||||||| ||||||||||||| ||| ||||||||||||||   ||||||||||||||||||| |  |||||||||||    
T  39112758 gaaagtgaacaaataaatcatccaattaaaatttgccaattgtgtcttgaaaaaaatttaatgctatttttctagagatgtagcattttcc 39112848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 8 - 209
Target Start/End: Original strand, 41322528 - 41322729
Alignment:
Q  8 tgagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtg 107  Q
    ||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||  | ||||||||||||||||    
T  41322528 tgagcaatgctatatctttaaaaaaataacatcaagaattcttcaagaataaagagcagtcaatcacaatgcactatttgtgaaaattcaaggaggtgtg 41322627  T
Q  108 gctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcatttt 207  Q
    |   ||||||||||||| ||||| |||||||||||||||||| |||  |||| ||||||||||||||||| |||||||||||||||| ||||||||||||    
T  41322628 gtagaaaaataggaagttaacaattaaatcatgcaattaaaacttgctaactatgtcttgaaaaattcttgatgctatttttctagagaaatagcatttt 41322727  T
Q  208 cc 209  Q
    ||    
T  41322728 cc 41322729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 29314008 - 29314202
Alignment:
Q  18 tatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggctaaaaaat 117  Q
    |||||||||||||||||||||||||||||| || |||||||||||| |  |||||||||||||||||||||||||||| ||||||||||| || ||||||    
T  29314008 tatatctctagaaaaataacatcaagaattgtttaagaataaagagaagtcaatcacaatgcactatttgccacaatttaaggaggtgtgactgaaaaat 29314107  T
Q  118 aggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcattttccttg 212  Q
    || ||||| |||||||||| |||||||||||| ||  ||||||||||||||||||||||| || |||||||| |||| |||||||||||||||||    
T  29314108 agaaagtggacaaataaataatgcaattaaaacttaccaactgtgtcttgaaaaattcttgatactatttttttagagaaatagcattttccttg 29314202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 31 - 209
Target Start/End: Complemental strand, 36473226 - 36473048
Alignment:
Q  31 aaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggctaaaaaataggaagtgaacaa 130  Q
    |||||||||||||||||||||||||||||||||||  |||||||| | ||||||||| ||||||| |||||||||||||| |||||||||||||||||||    
T  36473226 aaataacatcaagaattcttcaagaataaagagcagtcaatcacagtacactatttgacacaatttaaggaggtgtggctgaaaaataggaagtgaacaa 36473127  T
Q  131 ataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcattttcc 209  Q
    ||||||||||||||||||| ||  ||| ||||||||||||||||||| ||| |||||||||||| ||||||||||||||    
T  36473126 ataaatcatgcaattaaaacttaccaattgtgtcttgaaaaattcttgatgttatttttctagagaaatagcattttcc 36473048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 8 - 209
Target Start/End: Complemental strand, 15562114 - 15561913
Alignment:
Q  8 tgagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtg 107  Q
    ||||||||  |||||||| |||||||||||||||| ||   || ||||||||| | ||  |||||  |||||| ||||||||||||||||||||||||||    
T  15562114 tgagcaattctatatctcaagaaaaataacatcaaaaaaattttaagaataaataacagtcaatcgtaatgcattatttgccacaattcaaggaggtgtg 15562015  T
Q  108 gctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcatttt 207  Q
    ||| |||||||||||||||||||||||||||| ||||||||| ||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  15562014 gctgaaaaataggaagtgaacaaataaatcatacaattaaaacttgccaactgtatcttgaaaaattcttgatgctatttttctagataaatagcatttt 15561915  T
Q  208 cc 209  Q
    ||    
T  15561914 cc 15561913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 28 - 207
Target Start/End: Complemental strand, 11653894 - 11653712
Alignment:
Q  28 gaaaaataacatcaagaattcttcaagaataaagagca----accaatcacaatgcactatttgccacaattcaaggaggtgtggctaaaaaataggaag 123  Q
    ||||||||||||||||||||||||||||||||||||||    | |||||| |||| |||||||||||||||||||||| |||||||| ||||| || |||    
T  11653894 gaaaaataacatcaagaattcttcaagaataaagagcagtcaatcaatcataatgtactatttgccacaattcaaggatgtgtggcttaaaaa-agtaag 11653796  T
Q  124 tgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcatttt 207  Q
    ||||||||||||||||| |||||||| |||||| | ||||||| |||||||||| ||| ||||||| |||| ||||||||||||    
T  11653795 tgaacaaataaatcatgtaattaaaacttgtcagccgtgtcttaaaaaattcttgatgttatttttgtagagaaatagcatttt 11653712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 9 - 161
Target Start/End: Original strand, 4851733 - 4851885
Alignment:
Q  9 gagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtgg 108  Q
    |||||||| |||||||||||||||||||||||||||||| || ||||||||||||||  |||||| |||||||||||| |||||||| ||||| ||||||    
T  4851733 gagcaatgctatatctctagaaaaataacatcaagaattttttaagaataaagagcagtcaatcataatgcactattttccacaatttaaggaagtgtgg 4851832  T
Q  109 ctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgt 161  Q
    || ||||||||||| | |||||||||||||||||||||||| |||||| ||||    
T  4851833 ctgaaaaataggaaataaacaaataaatcatgcaattaaaacttgtcagctgt 4851885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 8 - 211
Target Start/End: Original strand, 34392107 - 34392301
Alignment:
Q  8 tgagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtg 107  Q
    |||| |||| |||||||||| ||||||||||||||||||| |||||||||||||||||  ||||||||||| |||||||||||||||| ||| |||||||    
T  34392107 tgaggaatgctatatctctaaaaaaataacatcaagaatttttcaagaataaagagcactcaatcacaatgtactatttgccacaatttaagaaggtgtg 34392206  T
Q  108 gctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaa-attcttaatgctatttttctagataaatagcattt 206  Q
    ||| ||||||   ||||||||||||||||||||||||||||| || |          ||||||| ||||||||| |||||||| |||| |||||||||||    
T  34392207 gctgaaaaatgaaaagtgaacaaataaatcatgcaattaaaacttat----------ttgaaaaaattcttaattctatttttttagagaaatagcattt 34392296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 9 - 145
Target Start/End: Original strand, 8551489 - 8551625
Alignment:
Q  9 gagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtgg 108  Q
    |||||||| |||||||||| ||||||||||| ||||||||||| |||||||||| ||||||||||||||||| | |||||||||||| |||||| |||||    
T  8551489 gagcaatgctatatctctaaaaaaataacattaagaattcttcgagaataaagaacaaccaatcacaatgcattgtttgccacaattaaaggagatgtgg 8551588  T
Q  109 ctaaaaaataggaagtgaacaaataaatcatgcaatt 145  Q
     |||||||||| || ||||||||||||||||||||||    
T  8551589 ttaaaaaatagaaaatgaacaaataaatcatgcaatt 8551625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 40 - 211
Target Start/End: Original strand, 2001679 - 2001849
Alignment:
Q  40 caagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggctaaaaaataggaagtgaacaaataaatcat 139  Q
    ||||||||||||||||||||||||||  |||||| ||| ||| ||||||||||||| ||||||||||||||  |||||||  ||||||||||||||||||    
T  2001679 caagaattcttcaagaataaagagcagtcaatca-aatacacgatttgccacaatttaaggaggtgtggctggaaaatagatagtgaacaaataaatcat 2001777  T
Q  140 gcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcattttcctt 211  Q
    | |||||||| ||| || |||||||||||||||   || |||||||||||||||| ||||| ||||||||||    
T  2001778 gtaattaaaacttggcagctgtgtcttgaaaaaaatttgatgctatttttctagagaaataacattttcctt 2001849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 1005596 - 1005794
Alignment:
Q  16 gttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggctaaaaa 115  Q
    ||||||||||||||||||||| || || ||||||| |||||||||||| || |||| | ||||||| ||||| ||||||| || |||||||| || ||||    
T  1005596 gttatatctctagaaaaataatattaaaaattcttaaagaataaagagtaatcaattataatgcaccatttgacacaatttaaagaggtgtgactgaaaa 1005695  T
Q  116 ataggaagtgaacaaataaatcatgcaattaaaatttgtca-actgtgtcttgaaaaattcttaatgcta--tttttctagataaatagcattttcctt 211  Q
    ||||||||||||||||||||| |||||||||||| ||||||   |||| ||| ||||| | || ||||||  ||||| |||| ||||||||||||||||    
T  1005696 ataggaagtgaacaaataaattatgcaattaaaacttgtcagtttgtgccttaaaaaaattttgatgctatttttttttagagaaatagcattttcctt 1005794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 107 - 210
Target Start/End: Original strand, 33888946 - 33889049
Alignment:
Q  107 ggctaaaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcattt 206  Q
    |||| ||||||||| ||||||||||||||| |||||||||||| ||||||  ||| ||||||||||||||| |||||||||||||||| |||||||||||    
T  33888946 ggctgaaaaatagggagtgaacaaataaattatgcaattaaaacttgtcagttgtttcttgaaaaattcttgatgctatttttctagagaaatagcattt 33889045  T
Q  207 tcct 210  Q
    ||||    
T  33889046 tcct 33889049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 50 - 177
Target Start/End: Original strand, 11643324 - 11643452
Alignment:
Q  50 tcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggctaaaaaataggaagtgaacaaataaatcatgcaattaaaa 149  Q
    ||||||||||||||||  ||||||||||||||||||| |||||||| ||| | |||| | | ||||||| |||||||||||||||||||| |||||||||    
T  11643324 tcaagaataaagagcagtcaatcacaatgcactatttaccacaatttaagaaagtgtagttgaaaaatacgaagtgaacaaataaatcatacaattaaaa 11643423  T
Q  150 tttgtca-actgtgtcttgaaaaattctt 177  Q
    |||| ||  ||||||||  ||||||||||    
T  11643424 tttgccatgctgtgtctgaaaaaattctt 11643452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 47 - 164
Target Start/End: Original strand, 4794159 - 4794275
Alignment:
Q  47 tcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggctaaaaaataggaagtgaacaaataaatcatgcaatta 146  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||  | |||||| |||| |||||||||||||||||| ||||||  ||||||| |    
T  4794159 tcttcaagaataaatagcagccaatcacaatgcactatttgccacaatatatggaggtttggccaaaaaataggaagtgaac-aataaacaatgcaataa 4794257  T
Q  147 aaatttgtcaactgtgtc 164  Q
    | ||||| || |||||||    
T  4794258 acatttgccagctgtgtc 4794275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 144
Target Start/End: Complemental strand, 37919709 - 37919603
Alignment:
Q  38 atcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggctaaaaaataggaagtgaacaaataaatc 137  Q
    |||||||||| || ||||||||| | ||| ||||||||||||| |||||| ||||||| |||||| ||||  | |||||||| |||||||||||||||||    
T  37919709 atcaagaattttttaagaataaataacaatcaatcacaatgcattatttgtcacaatttaaggagatgtgagtgaaaaatagtaagtgaacaaataaatc 37919610  T
Q  138 atgcaat 144  Q
    |||||||    
T  37919609 atgcaat 37919603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 129 - 209
Target Start/End: Complemental strand, 37919588 - 37919508
Alignment:
Q  129 aaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcattttcc 209  Q
    |||||||| | |||||||||| ||||||||||||| |||| |||||||| || ||||||||||||| ||||||||||||||    
T  37919588 aaataaattacgcaattaaaacttgtcaactgtgttttgataaattcttgatactatttttctagagaaatagcattttcc 37919508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 163 - 211
Target Start/End: Original strand, 4824296 - 4824344
Alignment:
Q  163 tcttgaaaaattcttaatgctatttttctagataaatagcattttcctt 211  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4824296 tcttgaaaaattcttaatgctatttttctagagaaatagcattttcctt 4824344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 46 - 163
Target Start/End: Original strand, 5548972 - 5549089
Alignment:
Q  46 ttcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggctaaaaaataggaagtgaacaaataaatcatgcaatt 145  Q
    ||||||||||||||||||||  |||||| ||| || || |||||| ||| || || |||||  || || |||||| ||||||||||||||||||||||||    
T  5548972 ttcttcaagaataaagagcagtcaatcataattcagtacttgccataatacacggtggtgtccctgaacaatagggagtgaacaaataaatcatgcaatt 5549071  T
Q  146 aaaatttgtcaactgtgt 163  Q
    | |  ||| |||||||||    
T  5549072 ataccttgacaactgtgt 5549089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 1196506 - 1196553
Alignment:
Q  8 tgagcaatgttatatctctagaaaaataacatcaagaattcttcaaga 55  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  1196506 tgagcaatgctatatctctagaaaaataacatcaagaattctttaaga 1196553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 172 - 210
Target Start/End: Complemental strand, 13357666 - 13357628
Alignment:
Q  172 attcttaatgctatttttctagataaatagcattttcct 210  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  13357666 attcttgatgctatttttctagataaatagcattttcct 13357628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 33888865 - 33888942
Alignment:
Q  10 agcaatgttatatctctagaaaa-ataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactattt 86  Q
    |||||||| ||||||||| |||| ||||||| || ||||||| ||||||||||| ||  ||||||||||||| |||||    
T  33888865 agcaatgtcatatctctaaaaaaaataacattaaaaattctttaagaataaagaacactcaatcacaatgcattattt 33888942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 3607036 - 3607087
Alignment:
Q  9 gagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaa 60  Q
    |||||||| ||||||||||||||||||||||||| ||   ||||||||||||    
T  3607036 gagcaatgctatatctctagaaaaataacatcaaaaaaatttcaagaataaa 3607087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 36473052 - 36473094
Alignment:
Q  13 aatgttatatctctagaaaaataacatcaagaattcttcaaga 55  Q
    |||| ||| |||||||||||||||||||||||||| |||||||    
T  36473052 aatgctatttctctagaaaaataacatcaagaatttttcaaga 36473094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 7646964 - 7646773
Alignment:
Q  18 tatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggctaaaaaat 117  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || ||||||    
T  7646964 tatatctctagaaaaataacatcaagaattctttaaaaataaagagcagccaatcacaatgcactatttgccacaattcaaggatgtgtgactgaaaaat 7646865  T
Q  118 aggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcattttcc 209  Q
    ||||| |||||||||||||||||||||||||| ||| ||  ||||||||||||||||| | || ||||||||||||| ||||||||||||||    
T  7646864 aggaaatgaacaaataaatcatgcaattaaaacttgccagatgtgtcttgaaaaattcctgatactatttttctagagaaatagcattttcc 7646773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 25935512 - 25935693
Alignment:
Q  13 aatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggctaa 112  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||||| | ||||| |||| |||||||| ||||||| |||||||||||||| |    
T  25935512 aatgttatatctctagaaaaataacattaagaattattcaagaataaagagcatctaatcataatgtactatttgtcacaatttaaggaggtgtggctga 25935611  T
Q  113 aaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctaga 194  Q
    ||||||| |||||||  ||||||||||| |||||||| ||| || |||||||||||||||||||| ||||||||||||||||    
T  25935612 aaaatagaaagtgaaagaataaatcatgtaattaaaacttgccagctgtgtcttgaaaaattcttgatgctatttttctaga 25935693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 29 - 145
Target Start/End: Complemental strand, 12607239 - 12607123
Alignment:
Q  29 aaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggctaaaaaataggaagtgaac 128  Q
    ||||| || ||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||| ||||||||||| || |||||||| ||||||||    
T  12607239 aaaaaaaaaatcaagaattcttcaagaataaagagcagtcaatcacagtgcactatttgccacaatttaaggaggtgtgactgaaaaatagaaagtgaac 12607140  T
Q  129 aaataaatcatgcaatt 145  Q
    |||||||||||||||||    
T  12607139 aaataaatcatgcaatt 12607123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 29487705 - 29487541
Alignment:
Q  18 tatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggctaaaaaat 117  Q
    ||||| ||||||||| ||| |||| ||  |||| |||||||||||| |  |||||||| ||||||||||||||||||| || ||||||||||| ||||||    
T  29487705 tatatatctagaaaagtaatatcacgacatcttaaagaataaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggctgaaaaat 29487606  T
Q  118 aggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgc 182  Q
    ||| ||||||||||||||||||||||| || | ||  ||||||||||| ||||||||||| ||||    
T  29487605 agggagtgaacaaataaatcatgcaatcaacacttaccaactgtgtctggaaaaattcttgatgc 29487541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 17366850 - 17366929
Alignment:
Q  9 gagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgc 88  Q
    |||||||| |||||||||||||||| ||||| ||||||| |||||||||||||| || | ||||||| ||||||||||||    
T  17366850 gagcaatgctatatctctagaaaaacaacattaagaatttttcaagaataaagaacagctaatcacactgcactatttgc 17366929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 209
Target Start/End: Original strand, 17366930 - 17367016
Alignment:
Q  117 taggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcattttcc 209  Q
    ||||||||||||||||||  ||||||||||||| |||      ||||||||||||||| || |||||||||||||||| ||||||||||||||    
T  17366930 taggaagtgaacaaataatgcatgcaattaaaacttgc-----gtgtcttgaaaaatt-ttgatgctatttttctagagaaatagcattttcc 17367016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 48 - 135
Target Start/End: Original strand, 29636994 - 29637081
Alignment:
Q  48 cttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggctaaaaaataggaagtgaacaaataaa 135  Q
    |||| |||||||||||||  |||||||||   ||||||||||||||| |||||||||   ||| |||||||| |||||||||||||||    
T  29636994 cttctagaataaagagcagtcaatcacaactaactatttgccacaatacaaggaggtaaagctgaaaaatagaaagtgaacaaataaa 29637081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 164
Target Start/End: Complemental strand, 28898477 - 28898426
Alignment:
Q  113 aaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtc 164  Q
    |||||||| |||||||||||||||||||||||||||| || | |||||||||    
T  28898477 aaaatagggagtgaacaaataaatcatgcaattaaaactttttaactgtgtc 28898426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 12607107 - 12607050
Alignment:
Q  133 aaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttc 190  Q
    ||||||||||||||||| || |||| |||||||| |||||||||| || |||||||||    
T  12607107 aaatcatgcaattaaaacttatcaattgtgtcttaaaaaattcttgatactatttttc 12607050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 28898552 - 28898505
Alignment:
Q  18 tatatctctagaaaaataacatcaagaattcttcaagaataaagagca 65  Q
    ||||| |||||||||| | ||||| |||||||||||||||||||||||    
T  28898552 tatatatctagaaaaagagcatcacgaattcttcaagaataaagagca 28898505  T

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Target: scaffold0002 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 12 - 208
Target Start/End: Original strand, 492669 - 492865
Alignment:
Q  12 caatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggcta 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||     
T  492669 caatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcagccaatcacaatgcacaatttgtcacaattcaaggaggtgtggctg 492768  T
Q  112 aaaaataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattcttaatgctatttttctagataaatagcattttc 208  Q
    ||||||||||| ||||||||||||| |||||||||||| ||| |    ||||||||||||| | || ||||||||||| |||| ||||| |||||||    
T  492769 aaaaataggaaatgaacaaataaattatgcaattaaaacttgactgtcgtgtcttgaaaaaattttgatgctatttttttagagaaataacattttc 492865  T

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Target: scaffold0132 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 545 - 642
Alignment:
Q  18 tatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggctaaaaaa 116  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||| |||||||||||||| |||||    
T  545 tatatctataaaaaaataacatcaagaattcttcaagaataaagagcagtcaatcacaatgcactatttg-cacaatttaaggaggtgtggctgaaaaa 642  T

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Target: scaffold0132; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 8505 - 8602
Alignment:
Q  18 tatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggctaaaaaa 116  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||| |||||||||||||| |||||    
T  8505 tatatctataaaaaaataacatcaagaattcttcaagaataaagagcagtcaatcacaatgcactatttg-cacaatttaaggaggtgtggctgaaaaa 8602  T

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Target: scaffold0071 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 148
Target Start/End: Complemental strand, 614 - 512
Alignment:
Q  46 ttcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggctaaaaaataggaagtgaacaaataaatcatgcaatt 145  Q
    |||||||||||||||||| | ||||||||||| |  |  ||| |||||| || |  |||||  || ||||||| ||||||||||||||||||||||| ||    
T  614 ttcttcaagaataaagagtagccaatcacaattcggtgcttgacacaatacacgatggtgttactgaaaaataagaagtgaacaaataaatcatgcagtt 515  T
Q  146 aaa 148  Q
    |||    
T  514 aaa 512  T

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Target: scaffold0339 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0339
Description:

Target: scaffold0339; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 13392 - 13444
Alignment:
Q  158 ctgtgtcttgaaaaattcttaatgctatttttctagataaatagcattttcctt 211  Q
    |||||||||||||| ||||| |||||||||||||||| ||||| ||||||||||    
T  13392 ctgtgtcttgaaaa-ttcttgatgctatttttctagagaaatatcattttcctt 13444  T

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Target: scaffold0188 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 16014 - 15977
Alignment:
Q  9 gagcaatgttatatctctagaaaaataacatcaagaat 46  Q
    |||||||||||||||| |||||||||||||||||||||    
T  16014 gagcaatgttatatctttagaaaaataacatcaagaat 15977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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