View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5576_low_28 (Length: 217)
Name: NF5576_low_28
Description: NF5576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5576_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 208
Target Start/End: Complemental strand, 33237760 - 33237563
Alignment:
| Q |
12 |
ccaccaggtgtg-cacctatttgccatttgcttagtttcagatgttccttcaacttagaatcaacaaaattaagtttttctttaaaatctgatagtgtat |
110 |
Q |
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| T |
33237760 |
ccaccaggtgtgtcacctatttgccatttgcttagtttcagatgttccttcaacttagaatcaacaaaattaagtttttctttaaaatctgatagtgtat |
33237661 |
T |
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| Q |
111 |
agtccctgaaacaagaacagaaaaaagaattgctatacaattaatacaaatgtatgttaaagattacatgtaaaacaatttaatttcttcgttcatct |
208 |
Q |
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| T |
33237660 |
agtccctgaaacaagaacagaaaaaagaattgctatagaattaatacaaatgtatgttaaagattacatgtaaaacaatttaatttcttcgttcatct |
33237563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 26376748 - 26376680
Alignment:
| Q |
47 |
ttcagatgttccttcaacttagaatcaacaaaattaagtttttctttaaaatctgatagtgtatagtcc |
115 |
Q |
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|||||| ||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||| |
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| T |
26376748 |
ttcagaggttccttcaacttagaatcaacaaaataaagtttgtctttagaatctgatagtgtatagtcc |
26376680 |
T |
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