View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5576_low_8 (Length: 347)
Name: NF5576_low_8
Description: NF5576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5576_low_8 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 136; Significance: 7e-71; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 5380481 - 5380671
Alignment:
| Q |
1 |
gctaccagtgttctatgatgttgatccctccgaggtacgtcaccaaactggtgagtttggacaagcgtttgagagtctcttgagcaaactttcgaagaag |
100 |
Q |
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| T |
5380481 |
gctaccggtgttctatgatgttgatcccttggaggtacgtcaccaaactggtgagtttggacaagcttttgaaagtctcttgagcaaactttc---gaag |
5380577 |
T |
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| Q |
101 |
aagaagaaagataagtcgccgaaatggagagaggctcttcgtggtgctgctgcctttgctggctttgtagttataaactccaggtaattttcaa |
194 |
Q |
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| T |
5380578 |
aagaagaaagataagacgctgaaatggagagaggctcttcatggggctgctgcctttgctggatttgtagttctaaactccaggtaattttcaa |
5380671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 5174265 - 5174359
Alignment:
| Q |
8 |
gtgttctatgatgttgatccctccgaggtacgtcaccaaactggtgagtttggacaagcgtttgagagtctcttgagcaaactttcgaagaagaa |
102 |
Q |
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| T |
5174265 |
gtgttctatgatgttgatccttcggatgtacgacaccaaacaggtgagtttggaaaagcgttccaaagtctcttgagcagaatttcaaagaagaa |
5174359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 5276011 - 5276105
Alignment:
| Q |
8 |
gtgttctatgatgttgatccctccgaggtacgtcaccaaactggtgagtttggacaagcgtttgagagtctcttgagcaaactttcgaagaagaa |
102 |
Q |
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| T |
5276011 |
gtgttctatgatgttgatccttcagatgtacgacaccaaacaggtgagtttggaaaagcgttccaaagtctcttgagcagaatttcaaagaagaa |
5276105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 5692905 - 5692812
Alignment:
| Q |
8 |
gtgttctatgatgttgatccctccgaggtacgtcaccaaactggtgagtttggacaagcgtttgagagtctcttgagcaaactttcgaagaaga |
101 |
Q |
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| T |
5692905 |
gtgttctatgatgttgatccttcagatgtacgacaccaaacaggtgagtttggaaaagcgttccaaagtctcttgagcagaatttcaaagaaga |
5692812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 5107762 - 5107709
Alignment:
| Q |
8 |
gtgttctatgatgttgatccctccgaggtacgtcaccaaactggtgagtttgga |
61 |
Q |
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| T |
5107762 |
gtgttctatgatgttgatccctcagaagtacgtcatcaaactggtgagtttgga |
5107709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 189
Target Start/End: Original strand, 5429837 - 5429905
Alignment:
| Q |
121 |
gaaatggagagaggctcttcgtggtgctgctgcctttgctggctttgtagttataaactccaggtaatt |
189 |
Q |
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| T |
5429837 |
gaaatggagagacgcacttcgtgaggcagctgaccttgctggatttgtagttttaaattccaggtaatt |
5429905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 107 - 217
Target Start/End: Complemental strand, 11821 - 11720
Alignment:
| Q |
107 |
aaagataagtcgccgaaatggagagaggctcttcgtggtgctgctgcctttgctggctttgtagttataaactccaggtaattttcaaatgttaagtgat |
206 |
Q |
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| T |
11821 |
aaagataagtcgccgaaatggagagaggctcttcgtggtgctactg---------gctttgtagttctaaactccaggtaattttcaaatgttaagtgat |
11731 |
T |
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| Q |
207 |
gacatcaaaat |
217 |
Q |
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| T |
11730 |
gacatgaaaat |
11720 |
T |
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